Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0010907

Physical Location & Seq

Genomic Coordinates Forward (+)

24013089 .. 24015470

Gene Structure 2382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G226700.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGCAGAAGAGCAGAACGCAGCACGAGAAGAAGAGAACGCAGAGCAAAGAGAAGAGAACGCAGAGCAAGCAGAAGAGAACGCAGAGCAAGAAGAAGAGAACGCAGAGCAAGCAGATGAGAACGCAGAGCAAGAAGAAGACGACGCAGAACAAGAAGAAGATAACTCAGAAAAAGCAGTAGAGAACGCAGCAGTGAAGGAAAAAGCGAAGGTAGCACAAGAAGAAGAGAACGCAGAACCGATCCGATCCGAAAATTCACAGATCCGACCCGAATTTCCGAATACTCGGGTGAAGAGGATAATGAAGCTGGACAGGGGCATCAACAAGGTAAATTCAGAAGCCTTACTCCTTGTATCGTGCTCCGCCCAGCTCTTCCTGGAGTTCCTGGCGGAGAGGTCGGCTGAGGTTGCGACGGAGAAGAAGCGCAAGATCGTGAAGCTCGAACACATGCGAGTCGCCGTCAAGAGGCATCGCCCGACCAGCGATTTCCTTTTGGATGAGCTCCCCGTGCCCTCTCAGCCGTCCGATCATCAGCCTACTGATCGAAGCAGCTCGCGCACCGTTTCCCATGCTCCAGCTCCGGCTAGACGAGATCGGAGCCGCTCTCGCGCCGTTTCCTATAAACCAGCTCCAGCTGGCACTCGCCGGATCGATCACTTCTTTCGGACAAAAGAAATCCCGATTCAGACCGAACAATCCCTAATTGAGACCGAGGAAGCCCCAATTGAGACCGAGGAAGCTTCAATTGAGATCGATGAAGCCCCCATTGAGACCGACGAAGGTCCAATTGAGACCGATGAAGCTTCAATAGAGACCGACGAAGCTTCAATAGAGACCGACGAAGCTTCAATAGAGACCGACGAAGCCCCAATTGTGACCGACGAAGGTCCAATTGAGACCGGTGAAGGGCCAATTGAGACCAACGAGTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

311

Amino Acids

34.78

Weight (kDa)

4.37

Isoelectric Point (pI)

81.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43250
fragaria_vesca	FvH4_4g23840 FvH4_4g23840
malus_domestica	MD13G1118300.v1.1 MD16G1118400.v1.1
prunus_persica	Prupe.1G226700_v2.0.a1 Prupe.1G226700_v2.0.a1 Prupe.1G226700_v2.0.a1
pyrus_communis	pycom13g10300 pycom16g10140
rosa_chinensis	RchiOBHm_Chr4g0430411
rosa_laevigata	RLG00000006979
rosa_multiflora	Rmu_co8256289.1_g000001 Rmu_sc0000131.1_g000044
rosa_roxburghii	Rroxscaffold_5G00372190
rosa_rugosa	Rorug04G0242700
rosa_samantha	Rh4BG306000 Rh4CG322000 Rh4DG303300
rosa_wichuraiana	Rw4G025980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	925
AccBSI	CCGCTC	1 cut(s)	603
AccII	CGCG	2 cut(s)	556, 609
AciI	CCGC	3 cut(s)	363, 389, 601
AclWI	GGATC	4 cut(s)	235, 240, 256, 656
AcsI	RAATTY	3 cut(s)	253, 272, 331
AfiI	CCNNNNNNNGG	2 cut(s)	465, 906
AgeI	ACCGGT	1 cut(s)	899
AgsI	TTSAA	4 cut(s)	744, 807, 828, 849
AjnI	CCWGG	2 cut(s)	375, 384
Alw21I	GWGCWC	2 cut(s)	362, 504
Alw26I	GTCTC	9 cut(s)	701, 722, 764, 785, 806, 827, 848, 890, 911
AlwI	GGATC	4 cut(s)	235, 240, 256, 656
Ama87I	CYCGRG	1 cut(s)	285
AoxI	GGCC	1 cut(s)	908
ApeKI	GCWGC	3 cut(s)	20, 188, 549
ApoI	RAATTY	3 cut(s)	253, 272, 331
AsiGI	ACCGGT	1 cut(s)	899
AspLEI	GCGC	3 cut(s)	426, 558, 611
AspS9I	GGNCC	3 cut(s)	782, 887, 908
AsuHPI	GGTGA	2 cut(s)	301, 914
AvaI	CYCGRG	1 cut(s)	285
AvaII	GGWCC	2 cut(s)	782, 887
BaeGI	GKGCMC	1 cut(s)	513
BanII	GRGCYC	1 cut(s)	504
BauI	CACGAG	1 cut(s)	24
BbsI	GAAGAC	1 cut(s)	144
Bbv12I	GWGCWC	2 cut(s)	362, 504
BbvCI	CCTCAGC	1 cut(s)	402
BbvI	GCAGC	3 cut(s)	32, 200, 561
BceAI	ACGGC	3 cut(s)	443, 505, 596
BciT130I	CCWGG	2 cut(s)	377, 386
BcoDI	GTCTC	9 cut(s)	701, 722, 764, 785, 806, 827, 848, 890, 911
BfaI	CTAG	2 cut(s)	585, 931
BisI	GCNGC	4 cut(s)	21, 189, 550, 601
BlsI	GCNGC	4 cut(s)	22, 190, 551, 602
Bme1390I	CCNGG	2 cut(s)	377, 386
Bme18I	GGWCC	2 cut(s)	782, 887
BmeT110I	CYCGRG	1 cut(s)	285
BmgT120I	GGNCC	3 cut(s)	782, 887, 908
BmiI	GGNNCC	1 cut(s)	599
BmrFI	CCNGG	2 cut(s)	377, 386
BmsI	GCATC	2 cut(s)	327, 478
BoxI	GACNNNNGTC	2 cut(s)	780, 885
BpiI	GAAGAC	1 cut(s)	144
BplI	GAGNNNNNCTC	2 cut(s)	589, 621
BpmI	CTGGAG	3 cut(s)	398, 558, 615
Bpu10I	CCTNAGC	1 cut(s)	402
Bsa29I	ATCGAT	2 cut(s)	651, 753
BsaI	GGTCTC	9 cut(s)	701, 722, 764, 785, 806, 827, 848, 890, 911
BsaJI	CCNNGG	2 cut(s)	711, 732
BsaWI	WCCGGW	1 cut(s)	899
Bsc4I	CCNNNNNNNGG	2 cut(s)	465, 906
Bse118I	RCCGGY	1 cut(s)	899
BseBI	CCWGG	2 cut(s)	377, 386
BseCI	ATCGAT	2 cut(s)	651, 753
BseDI	CCNNGG	2 cut(s)	711, 732
BseGI	GGATG	1 cut(s)	502
BseLI	CCNNNNNNNGG	2 cut(s)	465, 906
BseMII	CTCAG	3 cut(s)	180, 393, 530
BseSI	GKGCMC	1 cut(s)	513
BseXI	GCAGC	3 cut(s)	32, 200, 561
BseYI	CCCAGC	1 cut(s)	366
Bsh1236I	CGCG	2 cut(s)	556, 609
BshFI	GGCC	1 cut(s)	910
BshTI	ACCGGT	1 cut(s)	899
BshVI	ATCGAT	2 cut(s)	651, 753
BsiHKAI	GWGCWC	2 cut(s)	362, 504
BsiHKCI	CYCGRG	1 cut(s)	285
BsiSI	CCGG	3 cut(s)	581, 646, 900
BslI	CCNNNNNNNGG	2 cut(s)	465, 906
BsmAI	GTCTC	9 cut(s)	701, 722, 764, 785, 806, 827, 848, 890, 911
BsnI	GGCC	1 cut(s)	910
Bso31I	GGTCTC	9 cut(s)	701, 722, 764, 785, 806, 827, 848, 890, 911
BsoBI	CYCGRG	1 cut(s)	285
Bsp1286I	GDGCHC	3 cut(s)	362, 504, 513
BspACI	CCGC	3 cut(s)	363, 389, 601
BspANI	GGCC	1 cut(s)	910
BspCNI	CTCAG	3 cut(s)	179, 394, 529
BspDI	ATCGAT	2 cut(s)	651, 753
BspFNI	CGCG	2 cut(s)	556, 609
BspLI	GGNNCC	1 cut(s)	599
BspPI	GGATC	4 cut(s)	235, 240, 256, 656
BspQI	GCTCTTC	2 cut(s)	3, 377
BspTNI	GGTCTC	9 cut(s)	701, 722, 764, 785, 806, 827, 848, 890, 911
BsrBI	CCGCTC	1 cut(s)	603
BsrFI	RCCGGY	1 cut(s)	899
BssAI	RCCGGY	1 cut(s)	899
BssECI	CCNNGG	2 cut(s)	711, 732
BssSI	CACGAG	1 cut(s)	24
Bst2BI	CACGAG	1 cut(s)	24
Bst2UI	CCWGG	2 cut(s)	377, 386
Bst4CI	ACNGT	1 cut(s)	562
Bst6I	CTCTTC	8 cut(s)	3, 27, 48, 69, 90, 219, 287, 377
BstC8I	GCNNGC	4 cut(s)	69, 111, 554, 637
BstDEI	CTNAG	3 cut(s)	166, 402, 516
BstF5I	GGATG	1 cut(s)	502
BstFNI	CGCG	2 cut(s)	556, 609
BstHHI	GCGC	3 cut(s)	426, 558, 611
BstMAI	GTCTC	9 cut(s)	701, 722, 764, 785, 806, 827, 848, 890, 911
BstMWI	GCNNNNNNNGC	9 cut(s)	68, 110, 212, 407, 480, 508, 517, 555, 606
BstNI	CCWGG	2 cut(s)	377, 386
BstNSI	RCATGY	1 cut(s)	451
BstPAI	GACNNNNGTC	2 cut(s)	780, 885
BstSCI	CCNGG	2 cut(s)	375, 384
BstSLI	GKGCMC	1 cut(s)	513
BstUI	CGCG	2 cut(s)	556, 609
BstV1I	GCAGC	3 cut(s)	32, 200, 561
BstV2I	GAAGAC	1 cut(s)	144
BstX2I	RGATCY	1 cut(s)	261
BstYI	RGATCY	1 cut(s)	261
Bsu15I	ATCGAT	2 cut(s)	651, 753
BsuRI	GGCC	1 cut(s)	910
BsuTUI	ATCGAT	2 cut(s)	651, 753
BtgZI	GCGATG	1 cut(s)	455
BtsCI	GGATG	1 cut(s)	502
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	198
Cac8I	GCNNGC	4 cut(s)	69, 111, 554, 637
CfoI	GCGC	3 cut(s)	426, 558, 611
Cfr10I	RCCGGY	1 cut(s)	899
Cfr13I	GGNCC	3 cut(s)	782, 887, 908
ClaI	ATCGAT	2 cut(s)	651, 753
CseI	GACGC	1 cut(s)	152
CspAI	ACCGGT	1 cut(s)	899
CviAII	CATG	2 cut(s)	448, 569
DdeI	CTNAG	3 cut(s)	166, 402, 516
DrdI	GACNNNNNNGTC	1 cut(s)	925
DseDI	GACNNNNNNGTC	1 cut(s)	925
Eam1104I	CTCTTC	8 cut(s)	3, 27, 48, 69, 90, 219, 287, 377
EarI	CTCTTC	8 cut(s)	3, 27, 48, 69, 90, 219, 287, 377
EciI	GGCGGA	2 cut(s)	352, 404
Ecl136II	GAGCTC	1 cut(s)	502
Eco24I	GRGCYC	1 cut(s)	504
Eco31I	GGTCTC	9 cut(s)	701, 722, 764, 785, 806, 827, 848, 890, 911
Eco47I	GGWCC	2 cut(s)	782, 887
Eco53kI	GAGCTC	1 cut(s)	502
Eco88I	CYCGRG	1 cut(s)	285
EcoICRI	GAGCTC	1 cut(s)	502
EcoRII	CCWGG	2 cut(s)	375, 384
EcoT38I	GRGCYC	1 cut(s)	504
FaeI	CATG	2 cut(s)	451, 572
FaiI	YATR	3 cut(s)	449, 570, 621
FatI	CATG	2 cut(s)	447, 568
Fnu4HI	GCNGC	4 cut(s)	21, 189, 550, 601
FokI	GGATG	1 cut(s)	509
FriOI	GRGCYC	1 cut(s)	504
Fsp4HI	GCNGC	4 cut(s)	21, 189, 550, 601
FspBI	CTAG	2 cut(s)	585, 931
GlaI	GCGC	3 cut(s)	425, 557, 610
GluI	GCNGC	4 cut(s)	21, 189, 550, 601
GsaI	CCCAGC	1 cut(s)	370
GsuI	CTGGAG	3 cut(s)	398, 558, 615
HaeIII	GGCC	1 cut(s)	910
HapII	CCGG	3 cut(s)	581, 646, 900
HgaI	GACGC	1 cut(s)	152
HhaI	GCGC	3 cut(s)	426, 558, 611
Hin1II	CATG	2 cut(s)	451, 572
Hin6I	GCGC	3 cut(s)	424, 556, 609
HinP1I	GCGC	3 cut(s)	424, 556, 609
HindIII	AAGCTT	4 cut(s)	738, 801, 822, 843
HinfI	GANTC	3 cut(s)	453, 682, 926
HpaII	CCGG	3 cut(s)	581, 646, 900
HphI	GGTGA	2 cut(s)	301, 914
Hpy188III	TCNNGA	3 cut(s)	433, 463, 679
Hpy99I	CGWCG	7 cut(s)	146, 415, 779, 821, 842, 863, 884
HpyAV	CCTTC	5 cut(s)	190, 202, 773, 878, 899
HpyCH4III	ACNGT	1 cut(s)	562
HpyF10VI	GCNNNNNNNGC	9 cut(s)	68, 110, 212, 407, 480, 508, 517, 555, 606
HpyF3I	CTNAG	3 cut(s)	166, 402, 516
Hsp92II	CATG	2 cut(s)	451, 572
HspAI	GCGC	3 cut(s)	424, 556, 609
LguI	GCTCTTC	2 cut(s)	3, 377
LmnI	GCTCC	6 cut(s)	365, 507, 577, 583, 597, 634
Lsp1109I	GCAGC	3 cut(s)	32, 200, 561
LweI	GCATC	2 cut(s)	327, 478
MaeI	CTAG	2 cut(s)	585, 931
MaeIII	GTNAC	1 cut(s)	874
MbiI	CCGCTC	1 cut(s)	603
MfeI	CAATTG	6 cut(s)	723, 744, 786, 870, 891, 912
MflI	RGATCY	1 cut(s)	261
MhlI	GDGCHC	3 cut(s)	362, 504, 513
MlyI	GAGTC	1 cut(s)	462
MmeI	TCCRAC	1 cut(s)	289
MnlI	CCTC	7 cut(s)	288, 387, 397, 459, 523, 706, 727
MspA1I	CMGCKG	1 cut(s)	635
MspI	CCGG	3 cut(s)	581, 646, 900
MspR9I	CCNGG	2 cut(s)	377, 386
MunI	CAATTG	6 cut(s)	723, 744, 786, 870, 891, 912
MvaI	CCWGG	2 cut(s)	377, 386
MvnI	CGCG	2 cut(s)	556, 609
MwoI	GCNNNNNNNGC	9 cut(s)	68, 110, 212, 407, 480, 508, 517, 555, 606
NlaIII	CATG	2 cut(s)	451, 572
NlaIV	GGNNCC	1 cut(s)	599
NmuCI	GTSAC	1 cut(s)	874
NspI	RCATGY	1 cut(s)	451
PciSI	GCTCTTC	2 cut(s)	3, 377
PcsI	WCGNNNNNNNCGW	1 cut(s)	438
PfeI	GAWTC	1 cut(s)	682
PfoI	TCCNGGA	1 cut(s)	375
PinAI	ACCGGT	1 cut(s)	899
PkrI	GCNGC	4 cut(s)	22, 190, 551, 602
PleI	GAGTC	1 cut(s)	461
PpsI	GAGTC	1 cut(s)	461
PshAI	GACNNNNGTC	2 cut(s)	780, 885
Psp124BI	GAGCTC	1 cut(s)	504
Psp6I	CCWGG	2 cut(s)	375, 384
PspFI	CCCAGC	1 cut(s)	366
PspGI	CCWGG	2 cut(s)	375, 384
PspN4I	GGNNCC	1 cut(s)	599
PspPI	GGNCC	3 cut(s)	782, 887, 908
PsuI	RGATCY	1 cut(s)	261
PvuII	CAGCTG	1 cut(s)	635
SacI	GAGCTC	1 cut(s)	504
SapI	GCTCTTC	2 cut(s)	3, 377
SatI	GCNGC	4 cut(s)	21, 189, 550, 601
Sau96I	GGNCC	3 cut(s)	782, 887, 908
SchI	GAGTC	1 cut(s)	462
ScrFI	CCNGG	2 cut(s)	377, 386
SduI	GDGCHC	3 cut(s)	362, 504, 513
SfaNI	GCATC	2 cut(s)	327, 478
SinI	GGWCC	2 cut(s)	782, 887
SsiI	CCGC	3 cut(s)	363, 389, 601
SspMI	CTAG	2 cut(s)	585, 931
SstI	GAGCTC	1 cut(s)	504
StyD4I	CCNGG	2 cut(s)	375, 384
TaaI	ACNGT	1 cut(s)	562
TaqI	TCGA	4 cut(s)	441, 544, 651, 753
TaqII	GACCGA	9 cut(s)	704, 725, 746, 788, 809, 830, 851, 872, 893
TauI	GCSGC	1 cut(s)	603
TfiI	GAWTC	1 cut(s)	682
TscAI	CASTG	1 cut(s)	198
TseFI	GTSAC	1 cut(s)	874
TseI	GCWGC	3 cut(s)	20, 188, 549
Tsp45I	GTSAC	1 cut(s)	874
TspDTI	ATGAA	3 cut(s)	317, 771, 813
TspGWI	ACGGA	1 cut(s)	428
TspRI	CASTG	1 cut(s)	198
VpaK11BI	GGWCC	2 cut(s)	782, 887
XapI	RAATTY	3 cut(s)	253, 272, 331
XceI	RCATGY	1 cut(s)	451
XspI	CTAG	2 cut(s)	585, 931

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.