Rw4G025980

Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0010907
Physical Location & Seq
Forward (+)
52123706 .. 52124346
641 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G025980.1

Sequence Viewer

Length: 606 bp
ATGATCCAAGCCGTATCGGGAGAAGAGAACACGCAACCACAGATCGAAGAAGAAGAGGAACCACCGGTGGTTGAAGAAGACGACACAGCCATGACCCGACCCGAATCCAGTGAAGAGAACGCAGTCGGATCTGAATCCGAAGAAGATAACATAGCACCGATCGAAATCGCATCGGAAGAAGAGAACTCCGCAACGGTCCAACCCCTATCAGAAGGAGAGAAGGCAAAAGCGAACGGACTCGAACCGATTCGACTCGAACTTCCGACGGGTCGGGTCAAGAAGATAATGAAGCTGGACAGAGACATTAACAAAATAAACTCAGAAGCCCTACACCTGGTCTCGTGCTCCGCCCAGCTCTTCCTCCAATTCCTCGCCGAGGCCTCCGGCGAGGCGGCGATGGAGAAGAAGCGCAAGATCGCACCGGGCCACAGAGATTTCCTAGTCGATGAGCTCCCCGTGCAGTCTCAGCCGTCCGATCAGAAGTCCGCTGATCGGAGCCGCTCTCGCCCTGTTGCTGACAATCCAGCTCCGGCTGGCACTCGCCGGATTGATGATTTCTTCAGTAAGCCAGCAACTAAATCCCCTATTGAGGTTGAGGAGTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020
Pfam Domains
Protein Families
CBFD_NFYB_HMF

Protein Analysis

201

Amino Acids

22.05

Weight (kDa)

4.49

Isoelectric Point (pI)

79.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBFD_NFYB_HMF PF00808 86 - 139 1.3e-11 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 501
AciI CCGC 5 cut(s) 189, 348, 392, 486, 499
AclWI GGATC 1 cut(s) 136
AcuI CTGAAG 1 cut(s) 544
AfiI CCNNNNNNNGG 4 cut(s) 334, 376, 492, 589
AgeI ACCGGT 1 cut(s) 64
AgsI TTSAA 1 cut(s) 74
AjnI CCWGG 1 cut(s) 333
AluBI AGCT 4 cut(s) 292, 355, 451, 527
AluI AGCT 4 cut(s) 292, 355, 451, 527
Alw21I GWGCWC 2 cut(s) 347, 453
Alw26I GTCTC 3 cut(s) 294, 343, 468
AlwI GGATC 1 cut(s) 136
AoxI GGCC 2 cut(s) 378, 424
AsiGI ACCGGT 1 cut(s) 64
Asp700I GAANNNNTTC 1 cut(s) 246
AspLEI GCGC 1 cut(s) 411
AspS9I GGNCC 2 cut(s) 196, 424
AsuC2I CCSGG 1 cut(s) 423
AvaII GGWCC 1 cut(s) 196
BanII GRGCYC 1 cut(s) 453
BauI CACGAG 1 cut(s) 340
BbsI GAAGAC 1 cut(s) 84
Bbv12I GWGCWC 2 cut(s) 347, 453
BccI CCATC 1 cut(s) 391
BceAI ACGGC 1 cut(s) 454
BciT130I CCWGG 1 cut(s) 335
BcnI CCSGG 1 cut(s) 423
BcoDI GTCTC 3 cut(s) 294, 343, 468
BfaI CTAG 2 cut(s) 440, 604
BisI GCNGC 2 cut(s) 393, 499
BlsI GCNGC 2 cut(s) 394, 500
Bme1390I CCNGG 2 cut(s) 335, 423
Bme18I GGWCC 1 cut(s) 196
BmgT120I GGNCC 2 cut(s) 196, 424
BmiI GGNNCC 2 cut(s) 60, 497
BmrFI CCNGG 2 cut(s) 335, 423
BmsI GCATC 1 cut(s) 179
BpiI GAAGAC 1 cut(s) 84
BplI GAGNNNNNCTC 2 cut(s) 487, 519
BpuMI CCSGG 1 cut(s) 423
BsaBI GATNNNNATC 2 cut(s) 133, 164
BsaI GGTCTC 1 cut(s) 343
BsaJI CCNNGG 1 cut(s) 375
BsaWI WCCGGW 1 cut(s) 64
Bsc4I CCNNNNNNNGG 4 cut(s) 334, 376, 492, 589
Bse118I RCCGGY 1 cut(s) 64
Bse1I ACTGG 1 cut(s) 108
Bse8I GATNNNNATC 2 cut(s) 133, 164
BseBI CCWGG 1 cut(s) 335
BseDI CCNNGG 1 cut(s) 375
BseJI GATNNNNATC 2 cut(s) 133, 164
BseLI CCNNNNNNNGG 4 cut(s) 334, 376, 492, 589
BseMII CTCAG 2 cut(s) 333, 479
BseNI ACTGG 1 cut(s) 108
BseYI CCCAGC 1 cut(s) 351
BsgI GTGCAG 1 cut(s) 479
Bsh1285I CGRYCG 1 cut(s) 162
BshFI GGCC 2 cut(s) 380, 426
BshTI ACCGGT 1 cut(s) 64
BsiEI CGRYCG 1 cut(s) 162
BsiHKAI GWGCWC 2 cut(s) 347, 453
BsiSI CCGG 5 cut(s) 65, 384, 422, 530, 544
BslI CCNNNNNNNGG 4 cut(s) 334, 376, 492, 589
BsmAI GTCTC 3 cut(s) 294, 343, 468
BsnI GGCC 2 cut(s) 380, 426
Bso31I GGTCTC 1 cut(s) 343
Bsp1286I GDGCHC 2 cut(s) 347, 453
Bsp143I GATC 7 cut(s) 3, 42, 128, 159, 414, 475, 490
BspACI CCGC 5 cut(s) 189, 348, 392, 486, 499
BspANI GGCC 2 cut(s) 380, 426
BspCNI CTCAG 2 cut(s) 332, 478
BspLI GGNNCC 2 cut(s) 60, 497
BspPI GGATC 1 cut(s) 136
BspQI GCTCTTC 1 cut(s) 362
BspTNI GGTCTC 1 cut(s) 343
BsrBI CCGCTC 1 cut(s) 501
BsrFI RCCGGY 1 cut(s) 64
BsrI ACTGG 1 cut(s) 108
BssAI RCCGGY 1 cut(s) 64
BssECI CCNNGG 1 cut(s) 375
BssMI GATC 7 cut(s) 3, 42, 128, 159, 414, 475, 490
BssSI CACGAG 1 cut(s) 340
Bst2BI CACGAG 1 cut(s) 340
Bst2UI CCWGG 1 cut(s) 335
Bst4CI ACNGT 1 cut(s) 196
Bst6I CTCTTC 5 cut(s) 18, 48, 108, 174, 362
BstC8I GCNNGC 2 cut(s) 535, 570
BstDEI CTNAG 2 cut(s) 319, 465
BstENI CCTNNNNNAGG 1 cut(s) 374
BstHHI GCGC 1 cut(s) 411
BstKTI GATC 7 cut(s) 6, 45, 131, 162, 417, 478, 493
BstMAI GTCTC 3 cut(s) 294, 343, 468
BstMBI GATC 7 cut(s) 3, 42, 128, 159, 414, 475, 490
BstMCI CGRYCG 1 cut(s) 162
BstMWI GCNNNNNNNGC 3 cut(s) 457, 466, 504
BstNI CCWGG 1 cut(s) 335
BstSCI CCNGG 2 cut(s) 333, 421
BstV2I GAAGAC 1 cut(s) 84
BstX2I RGATCY 1 cut(s) 128
BstYI RGATCY 1 cut(s) 128
BsuRI GGCC 2 cut(s) 380, 426
BtgZI GCGATG 1 cut(s) 410
BtsIMutI CAGTG 1 cut(s) 115
Cac8I GCNNGC 2 cut(s) 535, 570
CfoI GCGC 1 cut(s) 411
Cfr10I RCCGGY 1 cut(s) 64
Cfr13I GGNCC 2 cut(s) 196, 424
CsiI ACCWGGT 1 cut(s) 333
CspAI ACCGGT 1 cut(s) 64
CviAII CATG 1 cut(s) 91
DdeI CTNAG 2 cut(s) 319, 465
DpnI GATC 7 cut(s) 5, 44, 130, 161, 416, 477, 492
DpnII GATC 7 cut(s) 3, 42, 128, 159, 414, 475, 490
Eam1104I CTCTTC 5 cut(s) 18, 48, 108, 174, 362
EarI CTCTTC 5 cut(s) 18, 48, 108, 174, 362
EciI GGCGGA 1 cut(s) 337
Ecl136II GAGCTC 1 cut(s) 451
Eco147I AGGCCT 1 cut(s) 380
Eco24I GRGCYC 1 cut(s) 453
Eco31I GGTCTC 1 cut(s) 343
Eco47I GGWCC 1 cut(s) 196
Eco53kI GAGCTC 1 cut(s) 451
Eco57I CTGAAG 1 cut(s) 544
EcoICRI GAGCTC 1 cut(s) 451
EcoNI CCTNNNNNAGG 1 cut(s) 374
EcoRII CCWGG 1 cut(s) 333
EcoT38I GRGCYC 1 cut(s) 453
FaeI CATG 1 cut(s) 94
FaiI YATR 2 cut(s) 92, 152
FatI CATG 1 cut(s) 90
Fnu4HI GCNGC 2 cut(s) 393, 499
FriOI GRGCYC 1 cut(s) 453
Fsp4HI GCNGC 2 cut(s) 393, 499
FspBI CTAG 2 cut(s) 440, 604
GlaI GCGC 1 cut(s) 410
GluI GCNGC 2 cut(s) 393, 499
GsaI CCCAGC 1 cut(s) 355
HaeIII GGCC 2 cut(s) 380, 426
HapII CCGG 5 cut(s) 65, 384, 422, 530, 544
HhaI GCGC 1 cut(s) 411
Hin1II CATG 1 cut(s) 94
Hin6I GCGC 1 cut(s) 409
HinP1I GCGC 1 cut(s) 409
HinfI GANTC 6 cut(s) 104, 134, 237, 247, 252, 599
HpaII CCGG 5 cut(s) 65, 384, 422, 530, 544
Hpy188III TCNNGA 2 cut(s) 18, 277
Hpy99I CGWCG 1 cut(s) 268
HpyAV CCTTC 2 cut(s) 206, 214
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4V TGCA 1 cut(s) 460
HpyF10VI GCNNNNNNNGC 3 cut(s) 457, 466, 504
HpyF3I CTNAG 2 cut(s) 319, 465
Hsp92II CATG 1 cut(s) 94
HspAI GCGC 1 cut(s) 409
Kzo9I GATC 7 cut(s) 3, 42, 128, 159, 414, 475, 490
LguI GCTCTTC 1 cut(s) 362
LmnI GCTCC 4 cut(s) 350, 456, 495, 532
LweI GCATC 1 cut(s) 179
MabI ACCWGGT 1 cut(s) 333
MaeI CTAG 2 cut(s) 440, 604
MalI GATC 7 cut(s) 5, 44, 130, 161, 416, 477, 492
MbiI CCGCTC 1 cut(s) 501
MboI GATC 7 cut(s) 3, 42, 128, 159, 414, 475, 490
MflI RGATCY 1 cut(s) 128
MhlI GDGCHC 2 cut(s) 347, 453
MluCI AATT 1 cut(s) 365
MlyI GAGTC 2 cut(s) 231, 246
MmeI TCCRAC 3 cut(s) 106, 223, 287
MnlI CCTC 8 cut(s) 49, 370, 371, 380, 382, 391, 583, 589
MroXI GAANNNNTTC 1 cut(s) 246
MseI TTAA 1 cut(s) 306
MslI CAYNNNNRTG 1 cut(s) 89
MspA1I CMGCKG 1 cut(s) 488
MspI CCGG 5 cut(s) 65, 384, 422, 530, 544
MspR9I CCNGG 2 cut(s) 335, 423
MvaI CCWGG 1 cut(s) 335
MwoI GCNNNNNNNGC 3 cut(s) 457, 466, 504
NciI CCSGG 1 cut(s) 423
NdeII GATC 7 cut(s) 3, 42, 128, 159, 414, 475, 490
NlaIII CATG 1 cut(s) 94
NlaIV GGNNCC 2 cut(s) 60, 497
NmeAIII GCCGAG 1 cut(s) 400
PceI AGGCCT 1 cut(s) 380
PciSI GCTCTTC 1 cut(s) 362
PdmI GAANNNNTTC 1 cut(s) 246
PfeI GAWTC 3 cut(s) 104, 134, 247
PinAI ACCGGT 1 cut(s) 64
PkrI GCNGC 2 cut(s) 394, 500
Ple19I CGATCG 1 cut(s) 162
PleI GAGTC 2 cut(s) 231, 246
PpsI GAGTC 2 cut(s) 231, 246
Psp124BI GAGCTC 1 cut(s) 453
Psp6I CCWGG 1 cut(s) 333
PspFI CCCAGC 1 cut(s) 351
PspGI CCWGG 1 cut(s) 333
PspN4I GGNNCC 2 cut(s) 60, 497
PspPI GGNCC 2 cut(s) 196, 424
PsuI RGATCY 1 cut(s) 128
PvuI CGATCG 1 cut(s) 162
RseI CAYNNNNRTG 1 cut(s) 89
SacI GAGCTC 1 cut(s) 453
SapI GCTCTTC 1 cut(s) 362
SaqAI TTAA 1 cut(s) 306
SatI GCNGC 2 cut(s) 393, 499
Sau3AI GATC 7 cut(s) 3, 42, 128, 159, 414, 475, 490
Sau96I GGNCC 2 cut(s) 196, 424
SchI GAGTC 2 cut(s) 231, 246
ScrFI CCNGG 2 cut(s) 335, 423
SduI GDGCHC 2 cut(s) 347, 453
SetI ASST 6 cut(s) 294, 336, 357, 453, 529, 594
SexAI ACCWGGT 1 cut(s) 333
SfaNI GCATC 1 cut(s) 179
SgrAI CRCCGGYG 1 cut(s) 64
SinI GGWCC 1 cut(s) 196
SmiMI CAYNNNNRTG 1 cut(s) 89
Sse9I AATT 1 cut(s) 365
SseBI AGGCCT 1 cut(s) 380
SsiI CCGC 5 cut(s) 189, 348, 392, 486, 499
SspMI CTAG 2 cut(s) 440, 604
SstI GAGCTC 1 cut(s) 453
StuI AGGCCT 1 cut(s) 380
StyD4I CCNGG 2 cut(s) 333, 421
TaaI ACNGT 1 cut(s) 196
TaqI TCGA 6 cut(s) 45, 162, 240, 250, 255, 444
TasI AATT 1 cut(s) 365
TauI GCSGC 2 cut(s) 395, 501
TfiI GAWTC 3 cut(s) 104, 134, 247
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TscAI CASTG 1 cut(s) 115
TspDTI ATGAA 1 cut(s) 302
TspGWI ACGGA 1 cut(s) 249
TspRI CASTG 1 cut(s) 115
VpaK11BI GGWCC 1 cut(s) 196
XagI CCTNNNNNAGG 1 cut(s) 374
XmnI GAANNNNTTC 1 cut(s) 246
XspI CTAG 2 cut(s) 440, 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.