Rroxscaffold_5G00372190

Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0010907
Physical Location & Seq
Forward (+)
53644926 .. 53645732
807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00372190.1

Sequence Viewer

Length: 807 bp
ATGGCAGAAGACGAGACCGCCGCAACGACACCACCACAGATGGAAGAAGAACAGGACTCAACAACAGTGCAACCACCGAGGGAAGAAGAAGGAGAGGACGCATTCCCGATCCGACCCGAATCAGGAGAAGAAAACACAGTCCGACCCGAATCGGATACAGCAACGGTCCAAGCCGTATCGGGAGAAGAGAACACGCAACAACAGATCGAAGAAGAAGAAGAGGAACCACCGGTGGTTGAAGAAGACGACTCAGCCATGACCCGACCCGAATCCGGTGAAGAGAACGCAGTCGGATCTGAATCCGAAGAAGATAACATAGCACCGATCGAAATCGCATCGGAAGAAGAGAACGCCGCAACGGTCCAACCCCTATCAGAAGGAGAGAAGGCAAAAGCAAACCGACTCGAACCGATTCGACTCGAACTTCCGACCGGTCGGGTCAAGAAGATAATGAAGCTGGACACAGACATTAACAAAATAAACTCAGAAGCCCTACACCTGGTCTCGTGCTCCGCCCAGCTCTTCCTCCAATTCCTCGCCGAGGCCTCCGGCGAGGCGGCGATGGAGAAGAAGCGCAAGATCGTGAAGCTCGAACACATACGGACGGCGGCGAAGAGGCACCAGGCCACCAGAGATTTCCTCGTGGATGAGCTCCCTGTGCCGTCTCAGCCGTCCGATCAGAAGTCCGCTGATCGAAGCCGCTCTGGCCCTGTTGCTGACAATCCAGCTCCGGCTGGCACTCGCAGGATTGATGACTTCTTTAGTAAGCCAGCAACTAAATCCCCTATTGAGGTTGAGGAGTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020
Pfam Domains
Protein Families
CBFD_NFYB_HMF

Protein Analysis

268

Amino Acids

29.44

Weight (kDa)

4.38

Isoelectric Point (pI)

79.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBFD_NFYB_HMF PF00808 141 - 203 9.6e-16 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 618
AccBSI CCGCTC 1 cut(s) 702
AciI CCGC 8 cut(s) 18, 21, 354, 513, 557, 608, 687, 700
AclWI GGATC 2 cut(s) 103, 301
AfiI CCNNNNNNNGG 5 cut(s) 122, 272, 499, 541, 790
AgeI ACCGGT 2 cut(s) 229, 431
AgsI TTSAA 1 cut(s) 239
AjnI CCWGG 2 cut(s) 498, 621
AluBI AGCT 5 cut(s) 457, 520, 589, 652, 728
AluI AGCT 5 cut(s) 457, 520, 589, 652, 728
Alw21I GWGCWC 2 cut(s) 512, 654
Alw26I GTCTC 3 cut(s) 8, 508, 669
AlwI GGATC 2 cut(s) 103, 301
AoxI GGCC 3 cut(s) 543, 624, 706
AsiGI ACCGGT 2 cut(s) 229, 431
Asp700I GAANNNNTTC 1 cut(s) 411
AspLEI GCGC 1 cut(s) 576
AspS9I GGNCC 3 cut(s) 166, 361, 707
AsuHPI GGTGA 1 cut(s) 287
AvaII GGWCC 2 cut(s) 166, 361
BanI GGYRCC 1 cut(s) 618
BanII GRGCYC 1 cut(s) 654
BauI CACGAG 2 cut(s) 505, 641
BbsI GAAGAC 2 cut(s) 15, 249
Bbv12I GWGCWC 2 cut(s) 512, 654
BccI CCATC 2 cut(s) 34, 556
BceAI ACGGC 4 cut(s) 158, 621, 646, 655
BciT130I CCWGG 2 cut(s) 500, 623
BciVI GTATCC 1 cut(s) 148
BcoDI GTCTC 3 cut(s) 8, 508, 669
BfaI CTAG 1 cut(s) 805
BfuI GTATCC 1 cut(s) 148
BglI GCCNNNNNGGC 1 cut(s) 705
BisI GCNGC 5 cut(s) 21, 354, 558, 609, 700
BlsI GCNGC 5 cut(s) 22, 355, 559, 610, 701
Bme1390I CCNGG 2 cut(s) 500, 623
Bme18I GGWCC 2 cut(s) 166, 361
BmgT120I GGNCC 3 cut(s) 166, 361, 707
BmiI GGNNCC 2 cut(s) 225, 620
BmrFI CCNGG 2 cut(s) 500, 623
BmsI GCATC 1 cut(s) 344
BpiI GAAGAC 2 cut(s) 15, 249
BplI GAGNNNNNCTC 2 cut(s) 624, 656
BsaBI GATNNNNATC 2 cut(s) 298, 329
BsaI GGTCTC 2 cut(s) 8, 508
BsaJI CCNNGG 2 cut(s) 77, 540
BsaWI WCCGGW 3 cut(s) 229, 272, 431
Bsc4I CCNNNNNNNGG 5 cut(s) 122, 272, 499, 541, 790
Bse118I RCCGGY 2 cut(s) 229, 431
Bse8I GATNNNNATC 2 cut(s) 298, 329
BseBI CCWGG 2 cut(s) 500, 623
BseDI CCNNGG 2 cut(s) 77, 540
BseGI GGATG 1 cut(s) 652
BseJI GATNNNNATC 2 cut(s) 298, 329
BseLI CCNNNNNNNGG 5 cut(s) 122, 272, 499, 541, 790
BseMII CTCAG 3 cut(s) 264, 498, 680
BseYI CCCAGC 1 cut(s) 516
Bsh1285I CGRYCG 3 cut(s) 327, 432, 436
BshFI GGCC 3 cut(s) 545, 626, 708
BshNI GGYRCC 1 cut(s) 618
BshTI ACCGGT 2 cut(s) 229, 431
BsiEI CGRYCG 3 cut(s) 327, 432, 436
BsiHKAI GWGCWC 2 cut(s) 512, 654
BsiSI CCGG 5 cut(s) 230, 273, 432, 549, 731
BslI CCNNNNNNNGG 5 cut(s) 122, 272, 499, 541, 790
BsmAI GTCTC 3 cut(s) 8, 508, 669
BsmBI CGTCTC 1 cut(s) 669
BsmI GAATGC 1 cut(s) 101
BsnI GGCC 3 cut(s) 545, 626, 708
Bso31I GGTCTC 2 cut(s) 8, 508
Bsp1286I GDGCHC 2 cut(s) 512, 654
Bsp143I GATC 7 cut(s) 108, 204, 293, 324, 579, 676, 691
BspACI CCGC 8 cut(s) 18, 21, 354, 513, 557, 608, 687, 700
BspANI GGCC 3 cut(s) 545, 626, 708
BspCNI CTCAG 3 cut(s) 263, 497, 679
BspLI GGNNCC 2 cut(s) 225, 620
BspPI GGATC 2 cut(s) 103, 301
BspQI GCTCTTC 1 cut(s) 527
BspT107I GGYRCC 1 cut(s) 618
BspTNI GGTCTC 2 cut(s) 8, 508
BsrBI CCGCTC 1 cut(s) 702
BsrFI RCCGGY 2 cut(s) 229, 431
BssAI RCCGGY 2 cut(s) 229, 431
BssECI CCNNGG 2 cut(s) 77, 540
BssMI GATC 7 cut(s) 108, 204, 293, 324, 579, 676, 691
BssSI CACGAG 2 cut(s) 505, 641
Bst2BI CACGAG 2 cut(s) 505, 641
Bst2UI CCWGG 2 cut(s) 500, 623
Bst4CI ACNGT 4 cut(s) 67, 139, 166, 361
Bst6I CTCTTC 6 cut(s) 180, 213, 273, 339, 527, 608
BstC8I GCNNGC 2 cut(s) 736, 771
BstDEI CTNAG 3 cut(s) 250, 484, 666
BstENI CCTNNNNNAGG 1 cut(s) 539
BstF5I GGATG 1 cut(s) 652
BstHHI GCGC 1 cut(s) 576
BstKTI GATC 7 cut(s) 111, 207, 296, 327, 582, 679, 694
BstMAI GTCTC 3 cut(s) 8, 508, 669
BstMBI GATC 7 cut(s) 108, 204, 293, 324, 579, 676, 691
BstMCI CGRYCG 3 cut(s) 327, 432, 436
BstMWI GCNNNNNNNGC 3 cut(s) 658, 667, 705
BstNI CCWGG 2 cut(s) 500, 623
BstSCI CCNGG 2 cut(s) 498, 621
BstV2I GAAGAC 2 cut(s) 15, 249
BstX2I RGATCY 1 cut(s) 293
BstYI RGATCY 1 cut(s) 293
BsuI GTATCC 1 cut(s) 148
BsuRI GGCC 3 cut(s) 545, 626, 708
BtgZI GCGATG 1 cut(s) 575
BtsCI GGATG 1 cut(s) 652
BtsIMutI CAGTG 1 cut(s) 72
Cac8I GCNNGC 2 cut(s) 736, 771
CfoI GCGC 1 cut(s) 576
Cfr10I RCCGGY 2 cut(s) 229, 431
Cfr13I GGNCC 3 cut(s) 166, 361, 707
CseI GACGC 1 cut(s) 107
CsiI ACCWGGT 1 cut(s) 498
CspAI ACCGGT 2 cut(s) 229, 431
CviAII CATG 1 cut(s) 256
DdeI CTNAG 3 cut(s) 250, 484, 666
DpnI GATC 7 cut(s) 110, 206, 295, 326, 581, 678, 693
DpnII GATC 7 cut(s) 108, 204, 293, 324, 579, 676, 691
Eam1104I CTCTTC 6 cut(s) 180, 213, 273, 339, 527, 608
EarI CTCTTC 6 cut(s) 180, 213, 273, 339, 527, 608
EciI GGCGGA 1 cut(s) 502
Ecl136II GAGCTC 1 cut(s) 652
Eco147I AGGCCT 1 cut(s) 545
Eco24I GRGCYC 1 cut(s) 654
Eco31I GGTCTC 2 cut(s) 8, 508
Eco47I GGWCC 2 cut(s) 166, 361
Eco53kI GAGCTC 1 cut(s) 652
EcoICRI GAGCTC 1 cut(s) 652
EcoNI CCTNNNNNAGG 1 cut(s) 539
EcoRII CCWGG 2 cut(s) 498, 621
EcoT38I GRGCYC 1 cut(s) 654
Esp3I CGTCTC 1 cut(s) 669
FaeI CATG 1 cut(s) 259
FaiI YATR 3 cut(s) 257, 317, 599
FatI CATG 1 cut(s) 255
Fnu4HI GCNGC 5 cut(s) 21, 354, 558, 609, 700
FokI GGATG 1 cut(s) 659
FriOI GRGCYC 1 cut(s) 654
Fsp4HI GCNGC 5 cut(s) 21, 354, 558, 609, 700
FspBI CTAG 1 cut(s) 805
GlaI GCGC 1 cut(s) 575
GluI GCNGC 5 cut(s) 21, 354, 558, 609, 700
GsaI CCCAGC 1 cut(s) 520
HaeIII GGCC 3 cut(s) 545, 626, 708
HapII CCGG 5 cut(s) 230, 273, 432, 549, 731
HgaI GACGC 1 cut(s) 107
HhaI GCGC 1 cut(s) 576
Hin1II CATG 1 cut(s) 259
Hin6I GCGC 1 cut(s) 574
HinP1I GCGC 1 cut(s) 574
HpaII CCGG 5 cut(s) 230, 273, 432, 549, 731
HphI GGTGA 1 cut(s) 287
Hpy188III TCNNGA 5 cut(s) 106, 123, 180, 442, 583
HpyAV CCTTC 3 cut(s) 83, 371, 379
HpyCH4III ACNGT 4 cut(s) 67, 139, 166, 361
HpyCH4V TGCA 1 cut(s) 70
HpyF10VI GCNNNNNNNGC 3 cut(s) 658, 667, 705
HpyF3I CTNAG 3 cut(s) 250, 484, 666
Hsp92II CATG 1 cut(s) 259
HspAI GCGC 1 cut(s) 574
Kzo9I GATC 7 cut(s) 108, 204, 293, 324, 579, 676, 691
LguI GCTCTTC 1 cut(s) 527
LmnI GCTCC 3 cut(s) 515, 657, 733
LweI GCATC 1 cut(s) 344
MabI ACCWGGT 1 cut(s) 498
MaeI CTAG 1 cut(s) 805
MalI GATC 7 cut(s) 110, 206, 295, 326, 581, 678, 693
MbiI CCGCTC 1 cut(s) 702
MboI GATC 7 cut(s) 108, 204, 293, 324, 579, 676, 691
MflI RGATCY 1 cut(s) 293
MhlI GDGCHC 2 cut(s) 512, 654
MluCI AATT 1 cut(s) 530
MlyI GAGTC 4 cut(s) 50, 242, 396, 411
MmeI TCCRAC 5 cut(s) 136, 166, 271, 388, 452
MroXI GAANNNNTTC 1 cut(s) 411
MseI TTAA 1 cut(s) 471
MspA1I CMGCKG 1 cut(s) 689
MspI CCGG 5 cut(s) 230, 273, 432, 549, 731
MspR9I CCNGG 2 cut(s) 500, 623
Mva1269I GAATGC 1 cut(s) 101
MvaI CCWGG 2 cut(s) 500, 623
MwoI GCNNNNNNNGC 3 cut(s) 658, 667, 705
NdeII GATC 7 cut(s) 108, 204, 293, 324, 579, 676, 691
NlaIII CATG 1 cut(s) 259
NlaIV GGNNCC 2 cut(s) 225, 620
NmeAIII GCCGAG 1 cut(s) 565
PceI AGGCCT 1 cut(s) 545
PciSI GCTCTTC 1 cut(s) 527
PcsI WCGNNNNNNNCGW 1 cut(s) 588
PctI GAATGC 1 cut(s) 101
PdmI GAANNNNTTC 1 cut(s) 411
PfeI GAWTC 5 cut(s) 119, 149, 269, 299, 412
PinAI ACCGGT 2 cut(s) 229, 431
PkrI GCNGC 5 cut(s) 22, 355, 559, 610, 701
Ple19I CGATCG 1 cut(s) 327
PleI GAGTC 4 cut(s) 50, 242, 396, 411
PpsI GAGTC 4 cut(s) 50, 242, 396, 411
Psp124BI GAGCTC 1 cut(s) 654
Psp6I CCWGG 2 cut(s) 498, 621
PspFI CCCAGC 1 cut(s) 516
PspGI CCWGG 2 cut(s) 498, 621
PspN4I GGNNCC 2 cut(s) 225, 620
PspPI GGNCC 3 cut(s) 166, 361, 707
PsuI RGATCY 1 cut(s) 293
PvuI CGATCG 1 cut(s) 327
SacI GAGCTC 1 cut(s) 654
SapI GCTCTTC 1 cut(s) 527
SaqAI TTAA 1 cut(s) 471
SatI GCNGC 5 cut(s) 21, 354, 558, 609, 700
Sau3AI GATC 7 cut(s) 108, 204, 293, 324, 579, 676, 691
Sau96I GGNCC 3 cut(s) 166, 361, 707
SchI GAGTC 4 cut(s) 50, 242, 396, 411
ScrFI CCNGG 2 cut(s) 500, 623
SduI GDGCHC 2 cut(s) 512, 654
SetI ASST 7 cut(s) 459, 501, 522, 591, 654, 730, 795
SexAI ACCWGGT 1 cut(s) 498
SfaNI GCATC 1 cut(s) 344
SgrAI CRCCGGYG 1 cut(s) 229
SinI GGWCC 2 cut(s) 166, 361
Sse9I AATT 1 cut(s) 530
SseBI AGGCCT 1 cut(s) 545
SsiI CCGC 8 cut(s) 18, 21, 354, 513, 557, 608, 687, 700
SspMI CTAG 1 cut(s) 805
SstI GAGCTC 1 cut(s) 654
StuI AGGCCT 1 cut(s) 545
StyD4I CCNGG 2 cut(s) 498, 621
TaaI ACNGT 4 cut(s) 67, 139, 166, 361
TaqI TCGA 7 cut(s) 207, 327, 405, 415, 420, 591, 694
TasI AATT 1 cut(s) 530
TauI GCSGC 5 cut(s) 23, 356, 560, 611, 702
TfiI GAWTC 5 cut(s) 119, 149, 269, 299, 412
Tru1I TTAA 1 cut(s) 471
Tru9I TTAA 1 cut(s) 471
TscAI CASTG 1 cut(s) 72
TspDTI ATGAA 1 cut(s) 467
TspGWI ACGGA 1 cut(s) 616
TspRI CASTG 1 cut(s) 72
VpaK11BI GGWCC 2 cut(s) 166, 361
XagI CCTNNNNNAGG 1 cut(s) 539
XmnI GAANNNNTTC 1 cut(s) 411
XspI CTAG 1 cut(s) 805
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.