Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003913

Physical Location & Seq

Genomic Coordinates Reverse (-)

18603990 .. 18604677

Gene Structure 688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G45860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGAAACTTCTCAAAAATATCATACGTGCGGTTCCACACTAGTACAAACTATAGATGCTCCACTATCTCTAGTTTGGTCAATTCTACGTCGGTTTGATAACCCTCAAGCCTACAAACAATTCGTGAAAACGTGCAATCTAAGCTCCGGCGATGGAGGAGAAGGCTCCGTCCGTGAAGTGACGGTGGTTTCCGGTCTTCCAGCGGAGTTCAGCCGAGAGAGATTAGATGAACTTGACGATGAGTCTCATGTGATGATGATTAGCATTATAGGTGGTGATCATCGTTTGGTTAATTACCGGTCGAAAACGATGGCGTTTGTGGCGGCGGATACGGAGGAGAAGACGGTGGTGGTGGAGAGTTATGTGGTGGATGTGCCGGAAGGAAATAGTGAGGAGGAAACGACGTCTTTTGCTGATACAATCGTTGGGTTTAATCTTAAGTCATTGGCTAAGCTCTCGGAGAGGGTGGCTCATCTAAAGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007154 GO:0007165 GO:0008150 GO:0008289 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009892 GO:0009987 GO:0010033 GO:0010427 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019840 GO:0019888 GO:0023052 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031406 GO:0032268 GO:0032269 GO:0032515 GO:0032870 GO:0033293 GO:0033993 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0036094 GO:0038023 GO:0042221 GO:0042562 GO:0042802 GO:0042803 GO:0043086 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0044092 GO:0044424 GO:0044464 GO:0045936 GO:0046983 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0098772 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Polyketide_cyc2

Protein Analysis

161

Amino Acids

17.8

Weight (kDa)

4.89

Isoelectric Point (pI)

35.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Polyketide_cyc2	PF10604	13 - 154	7.1e-15	Polyketide cyclase / dehydrase and lipid transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45860 AT5G45870
fragaria_vesca	FvH4_3g07710 FvH4_3g07720 FvH4_3g07731
malus_domestica	MD05G1300200.v1.1
prunus_persica	Prupe.4G062100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0010891 RchiOBHm_Chr5g0010921
rosa_laevigata	RLG00000031795 RLG00000031796 RLG00000031797
rosa_multiflora	Rmu_co8447663.1_g000001 Rmu_sc0000109.1_g000001 Rmu_sc0001895.1_g000005 Rmu_sc0001895.1_g000006
rosa_roxburghii	Rroxscaffold_1G00065450 Rroxscaffold_1G00065460 Rroxscaffold_1G00065470
rosa_rugosa	Rorug04G0453600 Rorug04G0453700 Rorug04G0453800
rosa_samantha	Rh5AG086300 Rh5BG080600 Rh5BG080700 Rh5BG080800 Rh5CG093000 Rh5CG093300 Rh5DG080800 Rh5DG080900
rosa_wichuraiana	Rw0G017440 Rw0G017450 Rw0G017890 Rw0G017900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	407
AciI	CCGC	4 cut(s)	30, 203, 323, 326
AcyI	GRCGYC	1 cut(s)	404
AfaI	GTAC	1 cut(s)	45
AflII	CTTAAG	1 cut(s)	437
AgeI	ACCGGT	1 cut(s)	297
AhdI	GACNNNNNGTC	1 cut(s)	241
AhlI	ACTAGT	1 cut(s)	40
AluBI	AGCT	2 cut(s)	144, 454
AluI	AGCT	2 cut(s)	144, 454
Alw26I	GTCTC	1 cut(s)	249
AsiGI	ACCGGT	1 cut(s)	297
AsuHPI	GGTGA	1 cut(s)	287
BaeI	ACNNNNGTAYC	2 cut(s)	408, 441
BbsI	GAAGAC	2 cut(s)	188, 347
BccI	CCATC	2 cut(s)	146, 304
BciVI	GTATCC	1 cut(s)	322
BclI	TGATCA	1 cut(s)	277
BcoDI	GTCTC	1 cut(s)	249
BcuI	ACTAGT	1 cut(s)	40
BfaI	CTAG	2 cut(s)	41, 71
BfmI	CTRYAG	1 cut(s)	51
BfrI	CTTAAG	1 cut(s)	437
BfuI	GTATCC	1 cut(s)	322
BisI	GCNGC	1 cut(s)	324
BlpI	GCTNAGC	1 cut(s)	450
BlsI	GCNGC	1 cut(s)	325
BmeRI	GACNNNNNGTC	1 cut(s)	241
BmiI	GGNNCC	2 cut(s)	34, 166
BmsI	GCATC	1 cut(s)	46
BpiI	GAAGAC	2 cut(s)	188, 347
BplI	GAGNNNNNCTC	2 cut(s)	454, 486
Bpu1102I	GCTNAGC	1 cut(s)	450
BpuEI	CTTGAG	1 cut(s)	90
BsaAI	YACGTR	1 cut(s)	27
BsaHI	GRCGYC	1 cut(s)	404
BsaWI	WCCGGW	2 cut(s)	191, 297
Bse118I	RCCGGY	1 cut(s)	297
BseGI	GGATG	1 cut(s)	376
BseRI	GAGGAG	3 cut(s)	171, 350, 407
Bsh1285I	CGRYCG	1 cut(s)	302
BshTI	ACCGGT	1 cut(s)	297
BsiEI	CGRYCG	1 cut(s)	302
BsiSI	CCGG	4 cut(s)	147, 192, 298, 377
BsmAI	GTCTC	1 cut(s)	249
Bsp143I	GATC	1 cut(s)	277
Bsp1720I	GCTNAGC	1 cut(s)	450
BspACI	CCGC	4 cut(s)	30, 203, 323, 326
BspLI	GGNNCC	2 cut(s)	34, 166
BspTI	CTTAAG	1 cut(s)	437
BsrFI	RCCGGY	1 cut(s)	297
BssAI	RCCGGY	1 cut(s)	297
BssMI	GATC	1 cut(s)	277
BssNI	GRCGYC	1 cut(s)	404
Bst4CI	ACNGT	2 cut(s)	184, 346
BstACI	GRCGYC	1 cut(s)	404
BstAFI	CTTAAG	1 cut(s)	437
BstBAI	YACGTR	1 cut(s)	27
BstDEI	CTNAG	2 cut(s)	140, 450
BstF5I	GGATG	1 cut(s)	376
BstKTI	GATC	1 cut(s)	280
BstMAI	GTCTC	1 cut(s)	249
BstMBI	GATC	1 cut(s)	277
BstMCI	CGRYCG	1 cut(s)	302
BstMWI	GCNNNNNNNGC	2 cut(s)	141, 320
BstSFI	CTRYAG	1 cut(s)	51
BstV2I	GAAGAC	2 cut(s)	188, 347
BsuI	GTATCC	1 cut(s)	322
BtgZI	GCGATG	1 cut(s)	165
BtsCI	GGATG	1 cut(s)	376
Cfr10I	RCCGGY	1 cut(s)	297
Csp6I	GTAC	1 cut(s)	44
CspAI	ACCGGT	1 cut(s)	297
CviAII	CATG	1 cut(s)	248
CviJI	RGCY	7 cut(s)	110, 144, 165, 213, 449, 454, 470
CviKI_1	RGCY	7 cut(s)	110, 144, 165, 213, 449, 454, 470
CviQI	GTAC	1 cut(s)	44
DdeI	CTNAG	2 cut(s)	140, 450
DpnI	GATC	1 cut(s)	279
DpnII	GATC	1 cut(s)	277
DriI	GACNNNNNGTC	1 cut(s)	241
Eam1105I	GACNNNNNGTC	1 cut(s)	241
EciI	GGCGGA	1 cut(s)	341
FaeI	CATG	1 cut(s)	251
FaiI	YATR	5 cut(s)	24, 53, 249, 269, 363
FatI	CATG	1 cut(s)	247
FbaI	TGATCA	1 cut(s)	277
Fnu4HI	GCNGC	1 cut(s)	324
FokI	GGATG	1 cut(s)	383
Fsp4HI	GCNGC	1 cut(s)	324
FspBI	CTAG	2 cut(s)	41, 71
GluI	GCNGC	1 cut(s)	324
HapII	CCGG	4 cut(s)	147, 192, 298, 377
Hin1I	GRCGYC	1 cut(s)	404
Hin1II	CATG	1 cut(s)	251
HinfI	GANTC	1 cut(s)	242
HpaII	CCGG	4 cut(s)	147, 192, 298, 377
HphI	GGTGA	1 cut(s)	287
Hpy188I	TCNGA	1 cut(s)	460
Hpy188III	TCNNGA	1 cut(s)	124
Hpy99I	CGWCG	2 cut(s)	93, 406
HpyAV	CCTTC	2 cut(s)	155, 374
HpyCH4III	ACNGT	2 cut(s)	184, 346
HpyCH4IV	ACGT	4 cut(s)	26, 88, 131, 404
HpyCH4V	TGCA	1 cut(s)	135
HpyF10VI	GCNNNNNNNGC	2 cut(s)	141, 320
HpyF3I	CTNAG	2 cut(s)	140, 450
HpySE526I	ACGT	4 cut(s)	26, 88, 131, 404
Hsp92I	GRCGYC	1 cut(s)	404
Hsp92II	CATG	1 cut(s)	251
Ksp22I	TGATCA	1 cut(s)	277
Kzo9I	GATC	1 cut(s)	277
LmnI	GCTCC	3 cut(s)	64, 149, 170
LpnPI	CCDG	5 cut(s)	160, 205, 213, 311, 390
LweI	GCATC	1 cut(s)	46
MaeI	CTAG	2 cut(s)	41, 71
MaeII	ACGT	4 cut(s)	26, 88, 131, 404
MaeIII	GTNAC	1 cut(s)	178
MalI	GATC	1 cut(s)	279
MboI	GATC	1 cut(s)	277
MboII	GAAGA	2 cut(s)	188, 352
MluCI	AATT	3 cut(s)	81, 119, 292
MlyI	GAGTC	1 cut(s)	251
MnlI	CCTC	6 cut(s)	114, 149, 328, 385, 388, 456
MseI	TTAA	3 cut(s)	291, 432, 438
MspA1I	CMGCKG	1 cut(s)	203
MspCI	CTTAAG	1 cut(s)	437
MspI	CCGG	4 cut(s)	147, 192, 298, 377
MwoI	GCNNNNNNNGC	2 cut(s)	141, 320
NdeII	GATC	1 cut(s)	277
NlaIII	CATG	1 cut(s)	251
NlaIV	GGNNCC	2 cut(s)	34, 166
NmeAIII	GCCGAG	1 cut(s)	239
NmuCI	GTSAC	1 cut(s)	178
PinAI	ACCGGT	1 cut(s)	297
PkrI	GCNGC	1 cut(s)	325
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
Ppu21I	YACGTR	1 cut(s)	27
PspN4I	GGNNCC	2 cut(s)	34, 166
RsaI	GTAC	1 cut(s)	45
RsaNI	GTAC	1 cut(s)	44
SaqAI	TTAA	3 cut(s)	291, 432, 438
SatI	GCNGC	1 cut(s)	324
Sau3AI	GATC	1 cut(s)	277
SchI	GAGTC	1 cut(s)	251
SetI	ASST	7 cut(s)	29, 91, 134, 146, 274, 407, 456
SfaNI	GCATC	1 cut(s)	46
SfcI	CTRYAG	1 cut(s)	51
SmlI	CTYRAG	2 cut(s)	105, 437
SmoI	CTYRAG	2 cut(s)	105, 437
SpeI	ACTAGT	1 cut(s)	40
Sse9I	AATT	3 cut(s)	81, 119, 292
SsiI	CCGC	4 cut(s)	30, 203, 323, 326
SspMI	CTAG	2 cut(s)	41, 71
TaaI	ACNGT	2 cut(s)	184, 346
TaiI	ACGT	4 cut(s)	29, 91, 134, 407
TaqI	TCGA	1 cut(s)	302
TasI	AATT	3 cut(s)	81, 119, 292
TatI	WGTACW	1 cut(s)	43
TauI	GCSGC	1 cut(s)	326
Tru1I	TTAA	3 cut(s)	291, 432, 438
Tru9I	TTAA	3 cut(s)	291, 432, 438
TseFI	GTSAC	1 cut(s)	178
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	1 cut(s)	243
TspGWI	ACGGA	3 cut(s)	157, 161, 347
Vha464I	CTTAAG	1 cut(s)	437
XspI	CTAG	2 cut(s)	41, 71
ZraI	GACGTC	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.