Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003913

Physical Location & Seq

Genomic Coordinates Forward (+)

7069362 .. 7069856

Gene Structure 495 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG080800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGACAGTTACCATATCCATGCCCTCTTGCCAAATCAGTGTGGCTCAAGCCTGGTCCAGATCATAGATGCACCACTTCCTCTGGTTTGGTCAATCCTTCGCCAATTTGATAACCCTAAGGCCTACAAGTGCTTCGTAAAGAGCTGCATAATGTGCACTGGGGACGGAGGCATAGGAAGCATTCGTGAAGTGATACTTCGCTCTGGTTTACCTGGTAAAACCAGCATGGAGAGGCTTGACAAGCTTGATGATGAGAAGCATATCATAAATATTAGCATTGTTGGTGGCGAACACAAGCTTGTCAACTATAGTTCTACTACGACGGTGCATGTAGAGGAAGAAGAGAAAGGTATGAAGACTGTTGTGATTGAATCTTACGTGGTGGATATTCCTGCTGGGAATAGTAAAGAGGATGCTTGCTTGTTTGCTAATACCATCATAGGCTGCAACCTTAGGTCACTGGCTAAACTTGCAGAAAGGATGGCTGGTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007154 GO:0007165 GO:0008150 GO:0008289 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009892 GO:0009987 GO:0010033 GO:0010427 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019840 GO:0019888 GO:0023052 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031406 GO:0032268 GO:0032269 GO:0032515 GO:0032870 GO:0033293 GO:0033993 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0036094 GO:0038023 GO:0042221 GO:0042562 GO:0042802 GO:0042803 GO:0043086 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0044092 GO:0044424 GO:0044464 GO:0045936 GO:0046983 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0098772 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Polyketide_cyc2

Protein Analysis

164

Amino Acids

17.95

Weight (kDa)

5.94

Isoelectric Point (pI)

54.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Polyketide_cyc2	PF10604	20 - 159	1.4e-12	Polyketide cyclase / dehydrase and lipid transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45860 AT5G45870
fragaria_vesca	FvH4_3g07710 FvH4_3g07720 FvH4_3g07731
malus_domestica	MD05G1300200.v1.1
prunus_persica	Prupe.4G062100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0010891 RchiOBHm_Chr5g0010921
rosa_laevigata	RLG00000031795 RLG00000031796 RLG00000031797
rosa_multiflora	Rmu_co8447663.1_g000001 Rmu_sc0000109.1_g000001 Rmu_sc0001895.1_g000005 Rmu_sc0001895.1_g000006
rosa_roxburghii	Rroxscaffold_1G00065450 Rroxscaffold_1G00065460 Rroxscaffold_1G00065470
rosa_rugosa	Rorug04G0453600 Rorug04G0453700 Rorug04G0453800
rosa_samantha	Rh5AG086300 Rh5BG080600 Rh5BG080700 Rh5BG080800 Rh5CG093000 Rh5CG093300 Rh5DG080800 Rh5DG080900
rosa_wichuraiana	Rw0G017440 Rw0G017450 Rw0G017890 Rw0G017900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	371
AjnI	CCWGG	2 cut(s)	51, 211
AluBI	AGCT	3 cut(s)	144, 244, 298
AluI	AGCT	3 cut(s)	144, 244, 298
Alw21I	GWGCWC	1 cut(s)	158
Alw44I	GTGCAC	1 cut(s)	154
AoxI	GGCC	1 cut(s)	120
ApaLI	GTGCAC	1 cut(s)	154
ApeKI	GCWGC	2 cut(s)	144, 444
AspS9I	GGNCC	1 cut(s)	55
AvaII	GGWCC	1 cut(s)	55
AxyI	CCTNAGG	2 cut(s)	117, 452
BaeGI	GKGCMC	1 cut(s)	158
BbsI	GAAGAC	1 cut(s)	362
Bbv12I	GWGCWC	1 cut(s)	158
BbvI	GCAGC	2 cut(s)	131, 431
BccI	CCATC	2 cut(s)	443, 475
BciT130I	CCWGG	2 cut(s)	53, 213
BfmI	CTRYAG	1 cut(s)	307
BisI	GCNGC	2 cut(s)	145, 445
BlsI	GCNGC	2 cut(s)	146, 446
Bme1390I	CCNGG	2 cut(s)	53, 213
Bme18I	GGWCC	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	55
BmrFI	CCNGG	2 cut(s)	53, 213
BmrI	ACTGGG	1 cut(s)	168
BmsI	GCATC	2 cut(s)	58, 403
BmuI	ACTGGG	1 cut(s)	168
BpiI	GAAGAC	1 cut(s)	362
BpuEI	CTTGAG	1 cut(s)	31
BsaAI	YACGTR	1 cut(s)	379
Bse1I	ACTGG	2 cut(s)	163, 465
Bse21I	CCTNAGG	2 cut(s)	117, 452
BseBI	CCWGG	2 cut(s)	53, 213
BseGI	GGATG	2 cut(s)	418, 486
BseNI	ACTGG	2 cut(s)	163, 465
BseSI	GKGCMC	1 cut(s)	158
BseXI	GCAGC	2 cut(s)	131, 431
BseYI	CCCAGC	1 cut(s)	395
BshFI	GGCC	1 cut(s)	122
BsiHKAI	GWGCWC	1 cut(s)	158
BslFI	GGGAC	1 cut(s)	176
BsmFI	GGGAC	1 cut(s)	176
BsmI	GAATGC	1 cut(s)	180
BsnI	GGCC	1 cut(s)	122
Bsp1286I	GDGCHC	1 cut(s)	158
Bsp143I	GATC	1 cut(s)	60
BspANI	GGCC	1 cut(s)	122
BsrI	ACTGG	2 cut(s)	163, 465
BssMI	GATC	1 cut(s)	60
Bst2UI	CCWGG	2 cut(s)	53, 213
Bst4CI	ACNGT	3 cut(s)	8, 325, 361
Bst6I	CTCTTC	1 cut(s)	336
BstAPI	GCANNNNNTGC	1 cut(s)	153
BstBAI	YACGTR	1 cut(s)	379
BstC8I	GCNNGC	1 cut(s)	418
BstDEI	CTNAG	2 cut(s)	117, 452
BstF5I	GGATG	2 cut(s)	418, 486
BstKTI	GATC	1 cut(s)	63
BstMBI	GATC	1 cut(s)	60
BstMWI	GCNNNNNNNGC	4 cut(s)	153, 177, 241, 470
BstNI	CCWGG	2 cut(s)	53, 213
BstNSI	RCATGY	1 cut(s)	332
BstSCI	CCNGG	2 cut(s)	51, 211
BstSFI	CTRYAG	1 cut(s)	307
BstSLI	GKGCMC	1 cut(s)	158
BstV1I	GCAGC	2 cut(s)	131, 431
BstV2I	GAAGAC	1 cut(s)	362
Bsu36I	CCTNAGG	2 cut(s)	117, 452
BsuRI	GGCC	1 cut(s)	122
BtsCI	GGATG	2 cut(s)	418, 486
BtsIMutI	CAGTG	3 cut(s)	44, 156, 458
Cac8I	GCNNGC	1 cut(s)	418
Cfr13I	GGNCC	1 cut(s)	55
CsiI	ACCWGGT	1 cut(s)	211
CviAII	CATG	3 cut(s)	20, 226, 329
DdeI	CTNAG	2 cut(s)	117, 452
DpnI	GATC	1 cut(s)	62
DpnII	GATC	1 cut(s)	60
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
Eco147I	AGGCCT	1 cut(s)	122
Eco47I	GGWCC	1 cut(s)	55
Eco81I	CCTNAGG	2 cut(s)	117, 452
EcoRII	CCWGG	2 cut(s)	51, 211
FaeI	CATG	3 cut(s)	23, 229, 332
FalI	AAGNNNNNCTT	2 cut(s)	180, 212
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	3 cut(s)	19, 225, 328
Fnu4HI	GCNGC	2 cut(s)	145, 445
FokI	GGATG	1 cut(s)	425
Fsp4HI	GCNGC	2 cut(s)	145, 445
GluI	GCNGC	2 cut(s)	145, 445
GsaI	CCCAGC	1 cut(s)	399
HaeIII	GGCC	1 cut(s)	122
Hin1II	CATG	3 cut(s)	23, 229, 332
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HindIII	AAGCTT	2 cut(s)	242, 296
HinfI	GANTC	1 cut(s)	371
Hpy166II	GTNNAC	3 cut(s)	156, 209, 304
Hpy188III	TCNNGA	2 cut(s)	58, 185
Hpy8I	GTNNAC	3 cut(s)	156, 209, 304
Hpy99I	CGWCG	1 cut(s)	325
HpyAV	CCTTC	1 cut(s)	107
HpyCH4III	ACNGT	3 cut(s)	8, 325, 361
HpyCH4IV	ACGT	1 cut(s)	378
HpyCH4V	TGCA	6 cut(s)	71, 147, 156, 328, 447, 473
HpyF10VI	GCNNNNNNNGC	4 cut(s)	153, 177, 241, 470
HpyF3I	CTNAG	2 cut(s)	117, 452
HpySE526I	ACGT	1 cut(s)	378
Hsp92II	CATG	3 cut(s)	23, 229, 332
Kzo9I	GATC	1 cut(s)	60
Lsp1109I	GCAGC	2 cut(s)	131, 431
LweI	GCATC	2 cut(s)	58, 403
MabI	ACCWGGT	1 cut(s)	211
MaeII	ACGT	1 cut(s)	378
MaeIII	GTNAC	2 cut(s)	8, 456
MalI	GATC	1 cut(s)	62
MboI	GATC	1 cut(s)	60
MboII	GAAGA	3 cut(s)	350, 353, 367
MhlI	GDGCHC	1 cut(s)	158
MluCI	AATT	2 cut(s)	104, 490
MnlI	CCTC	6 cut(s)	35, 90, 161, 225, 328, 403
MslI	CAYNNNNRTG	1 cut(s)	18
MspR9I	CCNGG	2 cut(s)	53, 213
Mva1269I	GAATGC	1 cut(s)	180
MvaI	CCWGG	2 cut(s)	53, 213
MwoI	GCNNNNNNNGC	4 cut(s)	153, 177, 241, 470
NdeII	GATC	1 cut(s)	60
NlaIII	CATG	3 cut(s)	23, 229, 332
NmuCI	GTSAC	1 cut(s)	456
NspI	RCATGY	1 cut(s)	332
PceI	AGGCCT	1 cut(s)	122
PctI	GAATGC	1 cut(s)	180
PfeI	GAWTC	1 cut(s)	371
PkrI	GCNGC	2 cut(s)	146, 446
Ppu21I	YACGTR	1 cut(s)	379
Psp6I	CCWGG	2 cut(s)	51, 211
PspFI	CCCAGC	1 cut(s)	395
PspGI	CCWGG	2 cut(s)	51, 211
PspPI	GGNCC	1 cut(s)	55
RseI	CAYNNNNRTG	1 cut(s)	18
SatI	GCNGC	2 cut(s)	145, 445
Sau3AI	GATC	1 cut(s)	60
Sau96I	GGNCC	1 cut(s)	55
ScrFI	CCNGG	2 cut(s)	53, 213
SduI	GDGCHC	1 cut(s)	158
SetI	ASST	8 cut(s)	146, 214, 246, 300, 352, 381, 453, 458
SexAI	ACCWGGT	1 cut(s)	211
SfaNI	GCATC	2 cut(s)	58, 403
SfcI	CTRYAG	1 cut(s)	307
SinI	GGWCC	1 cut(s)	55
SmiMI	CAYNNNNRTG	1 cut(s)	18
SmlI	CTYRAG	1 cut(s)	46
SmoI	CTYRAG	1 cut(s)	46
Sse9I	AATT	2 cut(s)	104, 490
SseBI	AGGCCT	1 cut(s)	122
SspI	AATATT	1 cut(s)	271
StuI	AGGCCT	1 cut(s)	122
StyD4I	CCNGG	2 cut(s)	51, 211
TaaI	ACNGT	3 cut(s)	8, 325, 361
TaiI	ACGT	1 cut(s)	381
TasI	AATT	2 cut(s)	104, 490
TfiI	GAWTC	1 cut(s)	371
TscAI	CASTG	3 cut(s)	44, 163, 465
TseFI	GTSAC	1 cut(s)	456
TseI	GCWGC	2 cut(s)	144, 444
Tsp45I	GTSAC	1 cut(s)	456
TspDTI	ATGAA	1 cut(s)	368
TspGWI	ACGGA	1 cut(s)	180
TspRI	CASTG	3 cut(s)	44, 163, 465
VneI	GTGCAC	1 cut(s)	154
VpaK11BI	GGWCC	1 cut(s)	55
XceI	RCATGY	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.