Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003913

Physical Location & Seq

Genomic Coordinates Reverse (-)

60757106 .. 60762743

Gene Structure 5638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0453600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3498 bp

ATGGTTCATGTATCGATCCGGCAAACCCGAAACCCGACCCGCAATTCCAACTCCATTCGGTTATCAAACCCAACCCAGTGGAATCGGCGAAGACTGAAGAAGTGTACGCTGCACAGTGCTCGGAGAGCGATGCCGACGAGAAACCTGGTGCTCCTGGCGTGCTTGGTGTCGCTGGTGGCAGCAATCGCCGCCGTTGATTCAAAATCAGACAGCTCCGGCGAGTGGCACATCCTCACGAAGCAGAACTTCTCTTCTCAGATCCGTCTCCATCCTCACATCCTCCTCTTCGTCACTCTTCCATGGTCCGGTGAGTGTCGATCACTCATGAGAGACGTGGCGAAGTTGGTCACTGATCGACCTGAAGAGTTCAGCTCGCTGAAGCTGATGGTGTTGCACAGAAATACAGAGAAGATGGTGGCAACTGCGATCGGTGCTGCTTCAGAATGGGAGGAAATTACGGCTTTGTACTATCACCATTCTGTTTCGTACAAATATGGAGGGAGGCTTCGAGCGCAGAACATTTTGAGTTCAATTCGTCCCTATGTGTCGGTTTTAGGTGAAGAACTTCCATTCAAATCGCTGAAGAGTCCGGAAGAGTTGAAAGCTTTCGTTGATTCAACTGACAAAGCTTTGGTTGTGTTTGAGTTTTGTGAATGGACTCCTAAATTGGTGGCCAAGAGGAAGATGAATGGGACTGATCACAGTGGCTTTGGGGAATTTTTTGGGTTAAACTTGAATGCAGAGACAAATAGAACCGACTGGCAGAAGAATAACCAGAAGGGTATGGAAACTGCAAAGATGAAGTGTAATGTTGATAATGAGCTTGGTGCAGTTCCTTGGGTTGGGGACTTCAGCTCAGTAAATGACAGTGCTGCTTCTGAGGAGACTGAGAACAGTAGGCCTGATGGTGCATCGTTTTGCACACTTGAAGAATATCAGTTGTTTGACTCTTTCTTCTCAAAGTTCATGACTATTGCAAGAGAGTTCGTTCTGCCTCCTGAAAGGCATAAATTTGGTTTGGTCTCAGAAAGATCTATGCTCTCAGCTCTTGGTATTGGAGATTCCAGTTCGTGGTTGGCAGTGCTATACTTTGCTGGATGTCCCAGTTGTTCGAAGATTATTAAAAAAGAGGATGACCTTAATAATGCTTTAAAGATGGATAGTTTAGTTAAGGAGCTAGAGGGTCATGGCAACACATTGGAGCCTGCTTTGCCTGCAAACCAGCCATCAGTTCTCTTATTTGTGGATAGATCATCTGACTTGTTAGAGACTAGAATCAATGGCAAGGAAGCTCTTGATGCTTTTCGGAAGCTGGCACTGCACTATCACATGCCTGACCAGATTGGCAGTCAAAGTAAAGACAAGCATGAGAAATCCTCATCCCAGCATTATCAAGCATTAAGGACCACATCTGGACATCCTAAATTAAAATTATCTCAGACAGTGCAGATTAGCAAACTAGAAGACAAGATGTCTACTTTCACAATTATAAATGAGGGCAAACAATTCACAGTGGAGAAGTTGGCTTTGGATCTAAAGGGTAATTCCTTGCAGGATATCTTGGAAATTGTACTTAAGCAAAAGAAGAAAGCTAAGTTAAGCTCACTGGTGAAGGATTTGGGTTTCCAACTTTTGTCAGATGATATGGACATCAAACCAGAGAGTACATTGCCATTACCGATGGAATCTGAATCTGATACAGTTACAGAAGAGCCATATAAGGAGGGCCTTGCTACAAGTAGTACTGACTCAGACAGAGATCAACAGCCAGATGCAACAAGTATATCTACCGAACAGCATCCAGAAACTTCTGAAGTCATGGATACTGAAACGTCATCTCAGAACAATGAAGAAAAAACAGATTATGTTGATACAAGCAATCAGATCTTATCTGTCGATAGTGAGCAACAGCTTGCAGATCATAAATGTGAAGATTTAGATACAGAAGAAGATAGTAATCCACAGGGCGAAAAGTCAGCAGAGCAGCAGCTTCACTTTCAAGGCTTTAAGGGTTCATTTTTCTTTTCTGATGGTAATTGTCGGTTGCTTCGAGCGCTGACTGGCAGTTCAAAATTTCCAGCCCTGGTAATAGTTGATCCCAATATGCAGCAGCATTATGTCTTCCCAGAGGAGACTAATGTCAATTATTCTTCACTGGTTGATTTTGTTTCCGCCTTGCTTAATGGAAGTCTTCTTCCATATCAACAGTCTGAAACTGTACTTGAAAGCTCTAGGAAAGCCACTCAACCACCATTTGTTAATCTGGACTTCCATCAGGTGGATTCTATCCCTCGAGTGACAACTCACACTTTCTCTGAGCTGGTTGTTGGGTTCAATCAATCTGACAGTGATGCTTGGAATAAGGATGTCTTAGTTCTTTTTAGCAATAGATGGTGTGGTTTTTGCCAGCGAATGGAGTTAGTTGTTCATGAAGTATACCGAGCTATGAAGGATTATGCTAAGATGCTGAAAAGGGAATCAAAGAATGACAAATCAACGTTTCACGATAATATGACGGGCGACGTGAAAAATGAAATGCTGGAGCTGCCATTAATGTACTTGCTGGATTGCACATTGAATGATTGCAGTTTGATACTGAAATCGATGAATCAGAGGGAGGTTTATCCTACTCTGGTGCTCTTTCCAGCAGAAAAGAAGCATGCTCTTCCTTATGAAGGAGATATGGCAGTCACTGAGATTTTCAATTTCATGGCTGATCATGGAAGTAACTCTCATCATCTTACCAGTGAAAAAGGAATGTTGTGGACTTCAGCTGAAAAGAGAGGAAGAAATCAAGATTTCTTTATGGTTCAGTCATCTGACGTTCATGAGCAGTCTAAGGACACGCTTCATGAAGTCGTATTAACAAATGTTCATAAACCAGTAATTGAAGACAAGCAGATCAAGTCTCACATACCCCAAGGCTTGCATGAAGCACCCCCGAATGTGGTGGTTGGTTCTGTCCTAGTTGCTACTGATAAACTTCATAGCGTACACCCCTTTGATAAATCAGAGATTCTCATTGTGAAGGCAGATCAAGTTACTGGATTTCAAGGTTTAATTATCAACAAGCATATCAGATGGGATGCTCTGCCTGAATTGGGAGAAGGAGTTAAGATGTTAGTAGAAGCCCCTTTGTCCTTTGGAGGACCGCTTATAAAGGGTGGAATGCCTCTTGTCGCGTTAACTCAAAAATTTGTCAAGGATGAATATCCGGAAATCTTACCAGGCATTGCATTTCTTGATCCATCAGCAACAATTCAAAAAATCAAAGAGCTCAAGTTAGGAAATCAATCTGTCACTGACTACTGGTTTTTCTTTGGGTATTCAAGTTGGGGTTGGGACCAGCTCTTTGATGAGATTGATAAAGGAGCTTGGAATTTAAGTGATGATGAGCTTTTGGAGTATTTCAAGAAGGAACTCCGGGGAGAAACTAAGCAAATACAAAGGAAAATACAGAGAATAGTTTTGGCTTTGTGGATACTACCTATTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007154 GO:0007165 GO:0008150 GO:0008289 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009892 GO:0009987 GO:0010033 GO:0010427 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019840 GO:0019888 GO:0023052 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031406 GO:0032268 GO:0032269 GO:0032515 GO:0032870 GO:0033293 GO:0033993 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0036094 GO:0038023 GO:0042221 GO:0042562 GO:0042802 GO:0042803 GO:0043086 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0044092 GO:0044424 GO:0044464 GO:0045936 GO:0046983 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0098772 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Polyketide_cyc2

Protein Analysis

1165

Amino Acids

131.55

Weight (kDa)

5.6

Isoelectric Point (pI)

45.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF179	PF02622	1001 - 1131	6.8e-11	AlgH-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45860 AT5G45870
fragaria_vesca	FvH4_3g07710 FvH4_3g07720 FvH4_3g07731
malus_domestica	MD05G1300200.v1.1
prunus_persica	Prupe.4G062100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0010891 RchiOBHm_Chr5g0010921
rosa_laevigata	RLG00000031795 RLG00000031796 RLG00000031797
rosa_multiflora	Rmu_co8447663.1_g000001 Rmu_sc0000109.1_g000001 Rmu_sc0001895.1_g000005 Rmu_sc0001895.1_g000006
rosa_roxburghii	Rroxscaffold_1G00065450 Rroxscaffold_1G00065460 Rroxscaffold_1G00065470
rosa_rugosa	Rorug04G0453600 Rorug04G0453700 Rorug04G0453800
rosa_samantha	Rh5AG086300 Rh5BG080600 Rh5BG080700 Rh5BG080800 Rh5CG093000 Rh5CG093300 Rh5DG080800 Rh5DG080900
rosa_wichuraiana	Rw0G017440 Rw0G017450 Rw0G017890 Rw0G017900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1490, 3158
AccB7I	CCANNNNNTGG	3 cut(s)	1071, 2278, 2413
AccI	GTMKAC	2 cut(s)	1475, 2436
AccII	CGCG	1 cut(s)	3182
AccIII	TCCGGA	2 cut(s)	589, 3214
AciI	CCGC	4 cut(s)	40, 189, 2172, 3152
AclI	AACGTT	1 cut(s)	2498
AclWI	GGATC	5 cut(s)	10, 253, 1539, 2090, 3239
AcoI	YGGCCR	1 cut(s)	672
AcsI	RAATTY	5 cut(s)	716, 1010, 2072, 3194, 3379
AcuI	CTGAAG	8 cut(s)	116, 381, 398, 423, 602, 835, 1833, 2754
AfaI	GTAC	9 cut(s)	106, 467, 488, 1572, 1666, 1744, 2220, 2558, 2994
AfeI	AGCGCT	1 cut(s)	2055
AfiI	CCNNNNNNNGG	9 cut(s)	222, 305, 842, 1071, 2278, 2413, 2675, 2947, 3101
AflII	CTTAAG	1 cut(s)	1574
AhdI	GACNNNNNGTC	1 cut(s)	1471
AjiI	CACGTC	2 cut(s)	334, 2524
AjnI	CCWGG	4 cut(s)	144, 153, 2082, 3226
AjuI	GAANNNNNNNTTGG	2 cut(s)	1511, 1543
Alw21I	GWGCWC	4 cut(s)	121, 153, 2640, 3279
Alw26I	GTCTC	8 cut(s)	269, 324, 737, 878, 1027, 1262, 2126, 2913
AlwI	GGATC	5 cut(s)	10, 253, 1539, 2090, 3239
AlwNI	CAGNNNCTG	1 cut(s)	2693
Ama87I	CYCGRG	1 cut(s)	2292
Aor13HI	TCCGGA	2 cut(s)	589, 3214
Aor51HI	AGCGCT	1 cut(s)	2055
AoxI	GGCC	3 cut(s)	672, 899, 1726
ApeKI	GCWGC	9 cut(s)	109, 179, 434, 872, 1984, 1987, 2107, 2110, 2545
ApoI	RAATTY	5 cut(s)	716, 1010, 2072, 3194, 3379
ArsI	GACNNNNNNTTYG	2 cut(s)	3335, 3367
AseI	ATTAAT	1 cut(s)	2552
Asp700I	GAANNNNTTC	2 cut(s)	564, 605
AspLEI	GCGC	2 cut(s)	514, 2056
AspS9I	GGNCC	5 cut(s)	303, 1404, 1726, 3149, 3343
AsuC2I	CCSGG	1 cut(s)	3425
AsuHPI	GGTGA	4 cut(s)	320, 464, 569, 1621
AsuII	TTCGAA	1 cut(s)	1112
AvaI	CYCGRG	1 cut(s)	2292
AvaII	GGWCC	4 cut(s)	303, 1404, 3149, 3343
BalI	TGGCCA	1 cut(s)	674
BanII	GRGCYC	1 cut(s)	3279
BbsI	GAAGAC	5 cut(s)	97, 1470, 2113, 2183, 2898
Bbv12I	GWGCWC	4 cut(s)	121, 153, 2640, 3279
BbvI	GCAGC	9 cut(s)	96, 191, 421, 859, 1996, 1999, 2119, 2122, 2532
BceAI	ACGGC	2 cut(s)	176, 474
BcgI	CGANNNNNNTGC	2 cut(s)	101, 135
BciT130I	CCWGG	4 cut(s)	146, 155, 2084, 3228
BciVI	GTATCC	2 cut(s)	1816, 3474
BclI	TGATCA	2 cut(s)	697, 2716
BcnI	CCSGG	1 cut(s)	3425
BcoDI	GTCTC	8 cut(s)	269, 324, 737, 878, 1027, 1262, 2126, 2913
BfaI	CTAG	5 cut(s)	1178, 1272, 1460, 2232, 2966
BfoI	RGCGCY	1 cut(s)	2057
BfrI	CTTAAG	1 cut(s)	1574
BfuI	GTATCC	2 cut(s)	1816, 3474
BglII	AGATCT	2 cut(s)	1031, 1884
BmcAI	AGTACT	1 cut(s)	1744
Bme1390I	CCNGG	5 cut(s)	146, 155, 2084, 3228, 3425
Bme18I	GGWCC	4 cut(s)	303, 1404, 3149, 3343
BmeRI	GACNNNNNGTC	1 cut(s)	1471
BmeT110I	CYCGRG	1 cut(s)	2292
BmgBI	CACGTC	2 cut(s)	334, 2524
BmgT120I	GGNCC	5 cut(s)	303, 1404, 1726, 3149, 3343
BmiI	GGNNCC	2 cut(s)	1203, 3344
BmrFI	CCNGG	5 cut(s)	146, 155, 2084, 3228, 3425
BmrI	ACTGGG	2 cut(s)	70, 1098
BmsI	GCATC	8 cut(s)	120, 920, 1288, 1762, 1807, 2341, 2454, 3076
BmuI	ACTGGG	2 cut(s)	70, 1098
BoxI	GACNNNNGTC	1 cut(s)	2138
BpiI	GAAGAC	5 cut(s)	97, 1470, 2113, 2183, 2898
BplI	GAGNNNNNCTC	4 cut(s)	356, 388, 1361, 1393
BpmI	CTGGAG	1 cut(s)	2561
Bpu14I	TTCGAA	1 cut(s)	1112
BpuEI	CTTGAG	1 cut(s)	3263
BpuMI	CCSGG	1 cut(s)	3425
Bsa29I	ATCGAT	2 cut(s)	14, 2603
BsaBI	GATNNNNATC	2 cut(s)	1956, 3210
BsaI	GGTCTC	1 cut(s)	1027
BsaJI	CCNNGG	5 cut(s)	299, 836, 2082, 2920, 3424
BsaWI	WCCGGW	3 cut(s)	305, 589, 3214
BsaXI	ACNNNNNCTCC	2 cut(s)	3096, 3126
Bsc4I	CCNNNNNNNGG	9 cut(s)	222, 305, 842, 1071, 2278, 2413, 2675, 2947, 3101
Bse3DI	GCAATG	2 cut(s)	1667, 3231
Bse8I	GATNNNNATC	2 cut(s)	1956, 3210
BseAI	TCCGGA	2 cut(s)	589, 3214
BseBI	CCWGG	4 cut(s)	146, 155, 2084, 3228
BseCI	ATCGAT	2 cut(s)	14, 2603
BseDI	CCNNGG	5 cut(s)	299, 836, 2082, 2920, 3424
BseJI	GATNNNNATC	2 cut(s)	1956, 3210
BseLI	CCNNNNNNNGG	9 cut(s)	222, 305, 842, 1071, 2278, 2413, 2675, 2947, 3101
BseMI	GCAATG	2 cut(s)	1667, 3231
BseRI	GAGGAG	3 cut(s)	272, 896, 2144
BseXI	GCAGC	9 cut(s)	96, 191, 421, 859, 1996, 1999, 2119, 2122, 2532
BseYI	CCCAGC	1 cut(s)	1383
BsgI	GTGCAG	4 cut(s)	95, 849, 1304, 1466
Bsh1236I	CGCG	1 cut(s)	3182
Bsh1285I	CGRYCG	1 cut(s)	429
BshFI	GGCC	3 cut(s)	674, 901, 1728
BshVI	ATCGAT	2 cut(s)	14, 2603
BsiEI	CGRYCG	1 cut(s)	429
BsiHKAI	GWGCWC	4 cut(s)	121, 153, 2640, 3279
BsiHKCI	CYCGRG	1 cut(s)	2292
BsiSI	CCGG	6 cut(s)	19, 216, 306, 590, 3215, 3424
BslFI	GGGAC	5 cut(s)	522, 706, 860, 1086, 3356
BslI	CCNNNNNNNGG	9 cut(s)	222, 305, 842, 1071, 2278, 2413, 2675, 2947, 3101
BsmAI	GTCTC	8 cut(s)	269, 324, 737, 878, 1027, 1262, 2126, 2913
BsmBI	CGTCTC	2 cut(s)	269, 324
BsmFI	GGGAC	5 cut(s)	522, 706, 860, 1086, 3356
BsmI	GAATGC	2 cut(s)	742, 3174
BsnI	GGCC	3 cut(s)	674, 901, 1728
Bso31I	GGTCTC	1 cut(s)	1027
BsoBI	CYCGRG	1 cut(s)	2292
Bsp119I	TTCGAA	1 cut(s)	1112
Bsp1286I	GDGCHC	4 cut(s)	121, 153, 2640, 3279
Bsp13I	TCCGGA	2 cut(s)	589, 3214
Bsp19I	CCATGG	1 cut(s)	299
BspACI	CCGC	4 cut(s)	40, 189, 2172, 3152
BspANI	GGCC	3 cut(s)	674, 901, 1728
BspDI	ATCGAT	2 cut(s)	14, 2603
BspEI	TCCGGA	2 cut(s)	589, 3214
BspFNI	CGCG	1 cut(s)	3182
BspHI	TCATGA	5 cut(s)	324, 966, 2428, 2827, 2851
BspLI	GGNNCC	2 cut(s)	1203, 3344
BspPI	GGATC	5 cut(s)	10, 253, 1539, 2090, 3239
BspQI	GCTCTTC	2 cut(s)	1704, 2670
BspT104I	TTCGAA	1 cut(s)	1112
BspTI	CTTAAG	1 cut(s)	1574
BspTNI	GGTCTC	1 cut(s)	1027
BsrDI	GCAATG	2 cut(s)	1667, 3231
BssECI	CCNNGG	5 cut(s)	299, 836, 2082, 2920, 3424
BssNAI	GTATAC	1 cut(s)	2437
BssT1I	CCWWGG	3 cut(s)	299, 836, 2920
Bst1107I	GTATAC	1 cut(s)	2437
Bst2UI	CCWGG	4 cut(s)	146, 155, 2084, 3228
Bst6I	CTCTTC	8 cut(s)	256, 290, 300, 357, 578, 588, 1704, 2670
BstAFI	CTTAAG	1 cut(s)	1574
BstBI	TTCGAA	1 cut(s)	1112
BstC8I	GCNNGC	9 cut(s)	160, 374, 1206, 1215, 1314, 1914, 2408, 2661, 2927
BstDSI	CCRYGG	1 cut(s)	299
BstENI	CCTNNNNNAGG	1 cut(s)	2673
BstFNI	CGCG	1 cut(s)	3182
BstH2I	RGCGCY	1 cut(s)	2057
BstHHI	GCGC	2 cut(s)	514, 2056
BstMAI	GTCTC	8 cut(s)	269, 324, 737, 878, 1027, 1262, 2126, 2913
BstMCI	CGRYCG	1 cut(s)	429
BstNI	CCWGG	4 cut(s)	146, 155, 2084, 3228
BstNSI	RCATGY	2 cut(s)	1333, 2663
BstPAI	GACNNNNGTC	1 cut(s)	2138
BstSCI	CCNGG	5 cut(s)	144, 153, 2082, 3226, 3423
BstUI	CGCG	1 cut(s)	3182
BstV1I	GCAGC	9 cut(s)	96, 191, 421, 859, 1996, 1999, 2119, 2122, 2532
BstV2I	GAAGAC	5 cut(s)	97, 1470, 2113, 2183, 2898
BstX2I	RGATCY	4 cut(s)	258, 1031, 1531, 1884
BstXI	CCANNNNNNTGG	1 cut(s)	78
BstYI	RGATCY	4 cut(s)	258, 1031, 1531, 1884
BstZ17I	GTATAC	1 cut(s)	2437
Bsu15I	ATCGAT	2 cut(s)	14, 2603
BsuI	GTATCC	2 cut(s)	1816, 3474
BsuRI	GGCC	3 cut(s)	674, 901, 1728
BsuTUI	ATCGAT	2 cut(s)	14, 2603
BtgI	CCRYGG	1 cut(s)	299
BtgZI	GCGATG	1 cut(s)	143
BtrI	CACGTC	2 cut(s)	334, 2524
BtsI	GCAGTG	2 cut(s)	1086, 1316
Cac8I	GCNNGC	9 cut(s)	160, 374, 1206, 1215, 1314, 1914, 2408, 2661, 2927
CaiI	CAGNNNCTG	1 cut(s)	2693
CciI	TCATGA	5 cut(s)	324, 966, 2428, 2827, 2851
CfoI	GCGC	2 cut(s)	514, 2056
Cfr13I	GGNCC	5 cut(s)	303, 1404, 1726, 3149, 3343
ClaI	ATCGAT	2 cut(s)	14, 2603
CsiI	ACCWGGT	1 cut(s)	144
Csp6I	GTAC	9 cut(s)	105, 466, 487, 1571, 1665, 1743, 2219, 2557, 2993
CviQI	GTAC	9 cut(s)	105, 466, 487, 1571, 1665, 1743, 2219, 2557, 2993
DraI	TTTAAA	1 cut(s)	1152
DriI	GACNNNNNGTC	1 cut(s)	1471
EaeI	YGGCCR	1 cut(s)	672
Eam1104I	CTCTTC	8 cut(s)	256, 290, 300, 357, 578, 588, 1704, 2670
Eam1105I	GACNNNNNGTC	1 cut(s)	1471
EarI	CTCTTC	8 cut(s)	256, 290, 300, 357, 578, 588, 1704, 2670
EciI	GGCGGA	1 cut(s)	2161
Ecl136II	GAGCTC	1 cut(s)	3277
Eco130I	CCWWGG	3 cut(s)	299, 836, 2920
Eco147I	AGGCCT	1 cut(s)	901
Eco24I	GRGCYC	1 cut(s)	3279
Eco31I	GGTCTC	1 cut(s)	1027
Eco32I	GATATC	1 cut(s)	1558
Eco47I	GGWCC	4 cut(s)	303, 1404, 3149, 3343
Eco47III	AGCGCT	1 cut(s)	2055
Eco53kI	GAGCTC	1 cut(s)	3277
Eco57I	CTGAAG	8 cut(s)	116, 381, 398, 423, 602, 835, 1833, 2754
Eco88I	CYCGRG	1 cut(s)	2292
EcoICRI	GAGCTC	1 cut(s)	3277
EcoNI	CCTNNNNNAGG	1 cut(s)	2673
EcoO109I	RGGNCCY	1 cut(s)	1726
EcoRII	CCWGG	4 cut(s)	144, 153, 2082, 3226
EcoRV	GATATC	1 cut(s)	1558
EcoT14I	CCWWGG	3 cut(s)	299, 836, 2920
EcoT38I	GRGCYC	1 cut(s)	3279
ErhI	CCWWGG	3 cut(s)	299, 836, 2920
Esp3I	CGTCTC	2 cut(s)	269, 324
FalI	AAGNNNNNCTT	4 cut(s)	230, 262, 2354, 2386
FaqI	GGGAC	5 cut(s)	522, 706, 860, 1086, 3356
FauI	CCCGC	1 cut(s)	47
FbaI	TGATCA	2 cut(s)	697, 2716
FblI	GTMKAC	2 cut(s)	1475, 2436
FriOI	GRGCYC	1 cut(s)	3279
FspBI	CTAG	5 cut(s)	1178, 1272, 1460, 2232, 2966
GlaI	GCGC	2 cut(s)	513, 2055
GsaI	CCCAGC	1 cut(s)	1387
GsuI	CTGGAG	1 cut(s)	2561
HaeII	RGCGCY	1 cut(s)	2057
HaeIII	GGCC	3 cut(s)	674, 901, 1728
HapII	CCGG	6 cut(s)	19, 216, 306, 590, 3215, 3424
HhaI	GCGC	2 cut(s)	514, 2056
Hin6I	GCGC	2 cut(s)	512, 2054
HinP1I	GCGC	2 cut(s)	512, 2054
HincII	GTYRAC	1 cut(s)	3186
HindII	GTYRAC	1 cut(s)	3186
HindIII	AAGCTT	2 cut(s)	603, 627
HpaI	GTTAAC	1 cut(s)	3186
HpaII	CCGG	6 cut(s)	19, 216, 306, 590, 3215, 3424
HphI	GGTGA	4 cut(s)	320, 464, 569, 1621
Hpy166II	GTNNAC	6 cut(s)	105, 1476, 2437, 2766, 2995, 3186
Hpy8I	GTNNAC	6 cut(s)	105, 1476, 2437, 2766, 2995, 3186
Hpy99I	CGWCG	2 cut(s)	139, 2525
HpyAV	CCTTC	7 cut(s)	772, 1606, 2443, 2669, 3022, 3101, 3409
HpyCH4IV	ACGT	5 cut(s)	333, 1832, 2498, 2523, 2823
HpySE526I	ACGT	5 cut(s)	333, 1832, 2498, 2523, 2823
HspAI	GCGC	2 cut(s)	512, 2054
Kpn2I	TCCGGA	2 cut(s)	589, 3214
Ksp22I	TGATCA	2 cut(s)	697, 2716
KspAI	GTTAAC	1 cut(s)	3186
LguI	GCTCTTC	2 cut(s)	1704, 2670
LmnI	GCTCC	6 cut(s)	156, 218, 1174, 1201, 2542, 3371
Lsp1109I	GCAGC	9 cut(s)	96, 191, 421, 859, 1996, 1999, 2119, 2122, 2532
LweI	GCATC	8 cut(s)	120, 920, 1288, 1762, 1807, 2341, 2454, 3076
MabI	ACCWGGT	1 cut(s)	144
MaeI	CTAG	5 cut(s)	1178, 1272, 1460, 2232, 2966
MaeII	ACGT	5 cut(s)	333, 1832, 2498, 2523, 2823
MaeIII	GTNAC	8 cut(s)	289, 346, 1702, 2296, 2689, 2726, 3040, 3298
MflI	RGATCY	4 cut(s)	258, 1031, 1531, 1884
MhlI	GDGCHC	4 cut(s)	121, 153, 2640, 3279
MlsI	TGGCCA	1 cut(s)	674
MluNI	TGGCCA	1 cut(s)	674
MlyI	GAGTC	4 cut(s)	595, 652, 941, 1742
MmeI	TCCRAC	2 cut(s)	72, 1651
Mox20I	TGGCCA	1 cut(s)	674
MroI	TCCGGA	2 cut(s)	589, 3214
MroXI	GAANNNNTTC	2 cut(s)	564, 605
MscI	TGGCCA	1 cut(s)	674
MslI	CAYNNNNRTG	1 cut(s)	1926
Msp20I	TGGCCA	1 cut(s)	674
MspA1I	CMGCKG	1 cut(s)	2774
MspCI	CTTAAG	1 cut(s)	1574
MspI	CCGG	6 cut(s)	19, 216, 306, 590, 3215, 3424
MspR9I	CCNGG	5 cut(s)	146, 155, 2084, 3228, 3425
Mva1269I	GAATGC	2 cut(s)	742, 3174
MvaI	CCWGG	4 cut(s)	146, 155, 2084, 3228
MvnI	CGCG	1 cut(s)	3182
NciI	CCSGG	1 cut(s)	3425
NcoI	CCATGG	1 cut(s)	299
NlaIV	GGNNCC	2 cut(s)	1203, 3344
NmuCI	GTSAC	5 cut(s)	289, 346, 2296, 2689, 3298
NspI	RCATGY	2 cut(s)	1333, 2663
NspV	TTCGAA	1 cut(s)	1112
PaeI	GCATGC	1 cut(s)	2663
PaeR7I	CTCGAG	1 cut(s)	2292
PagI	TCATGA	5 cut(s)	324, 966, 2428, 2827, 2851
PceI	AGGCCT	1 cut(s)	901
PciSI	GCTCTTC	2 cut(s)	1704, 2670
PcsI	WCGNNNNNNNCGW	1 cut(s)	2047
PctI	GAATGC	2 cut(s)	742, 3174
PdmI	GAANNNNTTC	2 cut(s)	564, 605
PflMI	CCANNNNNTGG	3 cut(s)	1071, 2278, 2413
Ple19I	CGATCG	1 cut(s)	429
PleI	GAGTC	4 cut(s)	594, 652, 941, 1742
PpsI	GAGTC	4 cut(s)	594, 652, 941, 1742
PshAI	GACNNNNGTC	1 cut(s)	2138
PshBI	ATTAAT	1 cut(s)	2552
PsiI	TTATAA	2 cut(s)	1490, 3158
Psp124BI	GAGCTC	1 cut(s)	3279
Psp1406I	AACGTT	1 cut(s)	2498
Psp6I	CCWGG	4 cut(s)	144, 153, 2082, 3226
PspFI	CCCAGC	1 cut(s)	1383
PspGI	CCWGG	4 cut(s)	144, 153, 2082, 3226
PspN4I	GGNNCC	2 cut(s)	1203, 3344
PspPI	GGNCC	5 cut(s)	303, 1404, 1726, 3149, 3343
PspXI	VCTCGAGB	1 cut(s)	2292
PstNI	CAGNNNCTG	1 cut(s)	2693
PsuI	RGATCY	4 cut(s)	258, 1031, 1531, 1884
PvuI	CGATCG	1 cut(s)	429
PvuII	CAGCTG	1 cut(s)	2774
RsaI	GTAC	9 cut(s)	106, 467, 488, 1572, 1666, 1744, 2220, 2558, 2994
RsaNI	GTAC	9 cut(s)	105, 466, 487, 1571, 1665, 1743, 2219, 2557, 2993
RseI	CAYNNNNRTG	1 cut(s)	1926
SacI	GAGCTC	1 cut(s)	3279
SapI	GCTCTTC	2 cut(s)	1704, 2670
Sau96I	GGNCC	5 cut(s)	303, 1404, 1726, 3149, 3343
ScaI	AGTACT	1 cut(s)	1744
SchI	GAGTC	4 cut(s)	595, 652, 941, 1742
ScrFI	CCNGG	5 cut(s)	146, 155, 2084, 3228, 3425
SduI	GDGCHC	4 cut(s)	121, 153, 2640, 3279
SexAI	ACCWGGT	1 cut(s)	144
SfaNI	GCATC	8 cut(s)	120, 920, 1288, 1762, 1807, 2341, 2454, 3076
Sfr274I	CTCGAG	1 cut(s)	2292
SfuI	TTCGAA	1 cut(s)	1112
SinI	GGWCC	4 cut(s)	303, 1404, 3149, 3343
SlaI	CTCGAG	1 cut(s)	2292
SmiMI	CAYNNNNRTG	1 cut(s)	1926
SmlI	CTYRAG	3 cut(s)	1574, 2292, 3278
SmoI	CTYRAG	3 cut(s)	1574, 2292, 3278
SphI	GCATGC	1 cut(s)	2663
SseBI	AGGCCT	1 cut(s)	901
SsiI	CCGC	4 cut(s)	40, 189, 2172, 3152
SspMI	CTAG	5 cut(s)	1178, 1272, 1460, 2232, 2966
SstI	GAGCTC	1 cut(s)	3279
StuI	AGGCCT	1 cut(s)	901
StyD4I	CCNGG	5 cut(s)	144, 153, 2082, 3226, 3423
StyI	CCWWGG	3 cut(s)	299, 836, 2920
TaiI	ACGT	5 cut(s)	336, 1835, 2501, 2526, 2826
TaqI	TCGA	9 cut(s)	14, 316, 355, 508, 1112, 1896, 2050, 2293, 2603
TatI	WGTACW	6 cut(s)	465, 1570, 1664, 1742, 2218, 2556
TauI	GCSGC	1 cut(s)	191
TseFI	GTSAC	5 cut(s)	289, 346, 2296, 2689, 3298
TseI	GCWGC	9 cut(s)	109, 179, 434, 872, 1984, 1987, 2107, 2110, 2545
Tsp45I	GTSAC	5 cut(s)	289, 346, 2296, 2689, 3298
TspGWI	ACGGA	1 cut(s)	251
Van91I	CCANNNNNTGG	3 cut(s)	1071, 2278, 2413
Vha464I	CTTAAG	1 cut(s)	1574
VpaK11BI	GGWCC	4 cut(s)	303, 1404, 3149, 3343
VspI	ATTAAT	1 cut(s)	2552
XagI	CCTNNNNNAGG	1 cut(s)	2673
XapI	RAATTY	5 cut(s)	716, 1010, 2072, 3194, 3379
XceI	RCATGY	2 cut(s)	1333, 2663
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1072
XhoI	CTCGAG	1 cut(s)	2292
XmiI	GTMKAC	2 cut(s)	1475, 2436
XmnI	GAANNNNTTC	2 cut(s)	564, 605
XspI	CTAG	5 cut(s)	1178, 1272, 1460, 2232, 2966
ZrmI	AGTACT	1 cut(s)	1744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.