Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003913

Physical Location & Seq

Genomic Coordinates Forward (+)

2972566 .. 2974469

Gene Structure 1904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G062100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGTGGTATTTTATCCAACCCAAAAGCAACAAACCCCAACCAAAACACAGCTCATGATCAGCAGCTACCATAGCCACACTCTGTTACCAAACCAGTGTGGCTCGAGCCTTGTCCAAACCATCGACGCCCCGCTGCCCCTGGTCTGGTCCGTCCTCCGCCAATTCGACAACCCTCAAGCCTACAAGCAGTTCATCAAGAGCTGCAGCATGCGTGCCGGCAATGGAGGCATCGGAAGCATCCGGGAAGTCGTGGTTAAAACCGGCTTGCCGGCGAAAACCAGCATGGAGAGGCTGGATGAGCTCGACGACAACATGCATGTCATGCATTATAGCATTGTTGGTGGAGATCACAGGCTTGCAAATTACAGTTCTACCACTACCGTGCACGGAGAAGAGGAAGGGAAGGCTGTTGTGATTCAGTCGTATGTGGTGGATGTGCCTGCCGGGAGCAGCGAGGAGGACACTTGTTTGTTTACTAATACGATCATAGGCTGCAATCTTAAGTCGCTGGCTAAAGTCACAGAAAAGATGGCTGCTAATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007154 GO:0007165 GO:0008150 GO:0008289 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009892 GO:0009987 GO:0010033 GO:0010427 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019840 GO:0019888 GO:0023052 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031406 GO:0032268 GO:0032269 GO:0032515 GO:0032870 GO:0033293 GO:0033993 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0036094 GO:0038023 GO:0042221 GO:0042562 GO:0042802 GO:0042803 GO:0043086 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0044092 GO:0044424 GO:0044464 GO:0045936 GO:0046983 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0098772 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Polyketide_cyc2

Protein Analysis

182

Amino Acids

19.84

Weight (kDa)

6.28

Isoelectric Point (pI)

45.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45860 AT5G45870
fragaria_vesca	FvH4_3g07710 FvH4_3g07720 FvH4_3g07731
malus_domestica	MD05G1300200.v1.1
prunus_persica	Prupe.4G062100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0010891 RchiOBHm_Chr5g0010921
rosa_laevigata	RLG00000031795 RLG00000031796 RLG00000031797
rosa_multiflora	Rmu_co8447663.1_g000001 Rmu_sc0000109.1_g000001 Rmu_sc0001895.1_g000005 Rmu_sc0001895.1_g000006
rosa_roxburghii	Rroxscaffold_1G00065450 Rroxscaffold_1G00065460 Rroxscaffold_1G00065470
rosa_rugosa	Rorug04G0453600 Rorug04G0453700 Rorug04G0453800
rosa_samantha	Rh5AG086300 Rh5BG080600 Rh5BG080700 Rh5BG080800 Rh5CG093000 Rh5CG093300 Rh5DG080800 Rh5DG080900
rosa_wichuraiana	Rw0G017440 Rw0G017450 Rw0G017890 Rw0G017900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	131, 157
AcyI	GRCGYC	1 cut(s)	126
AfiI	CCNNNNNNNGG	1 cut(s)	144
AflII	CTTAAG	1 cut(s)	500
AjnI	CCWGG	1 cut(s)	138
AleI	CACNNNNGTG	1 cut(s)	380
AluBI	AGCT	4 cut(s)	52, 66, 201, 301
AluI	AGCT	4 cut(s)	52, 66, 201, 301
Alw21I	GWGCWC	2 cut(s)	303, 387
Alw44I	GTGCAC	1 cut(s)	383
Ama87I	CYCGRG	1 cut(s)	103
ApaLI	GTGCAC	1 cut(s)	383
ApeKI	GCWGC	7 cut(s)	63, 133, 201, 204, 450, 492, 533
AspS9I	GGNCC	1 cut(s)	147
AsuC2I	CCSGG	2 cut(s)	242, 445
AvaI	CYCGRG	1 cut(s)	103
AvaII	GGWCC	1 cut(s)	147
BaeGI	GKGCMC	1 cut(s)	387
BanII	GRGCYC	1 cut(s)	303
Bbv12I	GWGCWC	2 cut(s)	303, 387
BbvI	GCAGC	7 cut(s)	75, 120, 188, 216, 462, 479, 520
BccI	CCATC	2 cut(s)	128, 523
BciT130I	CCWGG	1 cut(s)	140
BclI	TGATCA	1 cut(s)	57
BcnI	CCSGG	2 cut(s)	242, 445
BfmI	CTRYAG	1 cut(s)	202
BfrI	CTTAAG	1 cut(s)	500
BisI	GCNGC	7 cut(s)	64, 134, 202, 205, 451, 493, 534
BlsI	GCNGC	7 cut(s)	65, 135, 203, 206, 452, 494, 535
Bme1390I	CCNGG	3 cut(s)	140, 242, 445
Bme18I	GGWCC	1 cut(s)	147
BmeT110I	CYCGRG	1 cut(s)	103
BmgT120I	GGNCC	1 cut(s)	147
BmrFI	CCNGG	3 cut(s)	140, 242, 445
BmsI	GCATC	2 cut(s)	237, 246
BpuEI	CTTGAG	1 cut(s)	159
BpuMI	CCSGG	2 cut(s)	242, 445
BsaHI	GRCGYC	1 cut(s)	126
BsaJI	CCNNGG	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
Bse118I	RCCGGY	3 cut(s)	215, 260, 268
Bse1I	ACTGG	1 cut(s)	94
Bse3DI	GCAATG	1 cut(s)	226
BseBI	CCWGG	1 cut(s)	140
BseDI	CCNNGG	1 cut(s)	138
BseGI	GGATG	3 cut(s)	237, 301, 439
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseMI	GCAATG	1 cut(s)	226
BseNI	ACTGG	1 cut(s)	94
BseRI	GAGGAG	1 cut(s)	470
BseSI	GKGCMC	1 cut(s)	387
BseXI	GCAGC	7 cut(s)	75, 120, 188, 216, 462, 479, 520
BsiHKAI	GWGCWC	2 cut(s)	303, 387
BsiHKCI	CYCGRG	1 cut(s)	103
BsiSI	CCGG	5 cut(s)	216, 241, 261, 269, 444
BslI	CCNNNNNNNGG	1 cut(s)	144
BsoBI	CYCGRG	1 cut(s)	103
Bsp1286I	GDGCHC	2 cut(s)	303, 387
Bsp143I	GATC	3 cut(s)	57, 346, 483
BspACI	CCGC	2 cut(s)	131, 157
BspHI	TCATGA	1 cut(s)	54
BspMAI	CTGCAG	1 cut(s)	206
BspTI	CTTAAG	1 cut(s)	500
BsrDI	GCAATG	1 cut(s)	226
BsrFI	RCCGGY	3 cut(s)	215, 260, 268
BsrI	ACTGG	1 cut(s)	94
BssAI	RCCGGY	3 cut(s)	215, 260, 268
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	3 cut(s)	57, 346, 483
BssNI	GRCGYC	1 cut(s)	126
Bst2UI	CCWGG	1 cut(s)	140
Bst4CI	ACNGT	2 cut(s)	368, 382
Bst6I	CTCTTC	1 cut(s)	387
BstACI	GRCGYC	1 cut(s)	126
BstAFI	CTTAAG	1 cut(s)	500
BstAPI	GCANNNNNTGC	1 cut(s)	322
BstC8I	GCNNGC	8 cut(s)	209, 213, 217, 266, 270, 357, 441, 510
BstF5I	GGATG	3 cut(s)	237, 301, 439
BstKTI	GATC	3 cut(s)	60, 349, 486
BstMBI	GATC	3 cut(s)	57, 346, 483
BstMWI	GCNNNNNNNGC	5 cut(s)	72, 225, 234, 298, 322
BstNI	CCWGG	1 cut(s)	140
BstNSI	RCATGY	3 cut(s)	211, 316, 320
BstSCI	CCNGG	3 cut(s)	138, 240, 443
BstSFI	CTRYAG	1 cut(s)	202
BstSLI	GKGCMC	1 cut(s)	387
BstV1I	GCAGC	7 cut(s)	75, 120, 188, 216, 462, 479, 520
BtsCI	GGATG	3 cut(s)	237, 301, 439
BtsIMutI	CAGTG	1 cut(s)	101
Cac8I	GCNNGC	8 cut(s)	209, 213, 217, 266, 270, 357, 441, 510
CciI	TCATGA	1 cut(s)	54
Cfr10I	RCCGGY	3 cut(s)	215, 260, 268
Cfr13I	GGNCC	1 cut(s)	147
CseI	GACGC	1 cut(s)	134
CviAII	CATG	6 cut(s)	55, 208, 283, 313, 317, 322
DpnI	GATC	3 cut(s)	59, 348, 485
DpnII	GATC	3 cut(s)	57, 346, 483
Eam1104I	CTCTTC	1 cut(s)	387
EarI	CTCTTC	1 cut(s)	387
EciI	GGCGGA	1 cut(s)	146
Ecl136II	GAGCTC	1 cut(s)	301
Eco24I	GRGCYC	1 cut(s)	303
Eco47I	GGWCC	1 cut(s)	147
Eco53kI	GAGCTC	1 cut(s)	301
Eco88I	CYCGRG	1 cut(s)	103
EcoICRI	GAGCTC	1 cut(s)	301
EcoRII	CCWGG	1 cut(s)	138
EcoT22I	ATGCAT	2 cut(s)	318, 327
EcoT38I	GRGCYC	1 cut(s)	303
FaeI	CATG	6 cut(s)	58, 211, 286, 316, 320, 325
FatI	CATG	6 cut(s)	54, 207, 282, 312, 316, 321
FauI	CCCGC	1 cut(s)	138
FbaI	TGATCA	1 cut(s)	57
Fnu4HI	GCNGC	7 cut(s)	64, 134, 202, 205, 451, 493, 534
FokI	GGATG	3 cut(s)	224, 308, 446
FriOI	GRGCYC	1 cut(s)	303
Fsp4HI	GCNGC	7 cut(s)	64, 134, 202, 205, 451, 493, 534
GluI	GCNGC	7 cut(s)	64, 134, 202, 205, 451, 493, 534
HapII	CCGG	5 cut(s)	216, 241, 261, 269, 444
HgaI	GACGC	1 cut(s)	134
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	6 cut(s)	58, 211, 286, 316, 320, 325
HinfI	GANTC	1 cut(s)	415
HpaII	CCGG	5 cut(s)	216, 241, 261, 269, 444
Hpy166II	GTNNAC	2 cut(s)	385, 474
Hpy188I	TCNGA	1 cut(s)	233
Hpy188III	TCNNGA	2 cut(s)	55, 196
Hpy8I	GTNNAC	2 cut(s)	385, 474
Hpy99I	CGWCG	2 cut(s)	128, 308
HpyAV	CCTTC	2 cut(s)	392, 397
HpyCH4III	ACNGT	2 cut(s)	368, 382
HpyCH4V	TGCA	6 cut(s)	204, 316, 325, 359, 385, 495
HpyF10VI	GCNNNNNNNGC	5 cut(s)	72, 225, 234, 298, 322
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	6 cut(s)	58, 211, 286, 316, 320, 325
KroI	GCCGGC	2 cut(s)	215, 268
KroNI	GCCGGC	2 cut(s)	217, 270
Ksp22I	TGATCA	1 cut(s)	57
Kzo9I	GATC	3 cut(s)	57, 346, 483
LmnI	GCTCC	1 cut(s)	447
Lsp1109I	GCAGC	7 cut(s)	75, 120, 188, 216, 462, 479, 520
LweI	GCATC	2 cut(s)	237, 246
MaeIII	GTNAC	2 cut(s)	84, 517
MalI	GATC	3 cut(s)	59, 348, 485
MboI	GATC	3 cut(s)	57, 346, 483
MboII	GAAGA	1 cut(s)	404
MhlI	GDGCHC	2 cut(s)	303, 387
MluCI	AATT	3 cut(s)	161, 361, 541
MmeI	TCCRAC	1 cut(s)	41
MnlI	CCTC	7 cut(s)	164, 183, 218, 282, 388, 448, 451
Mph1103I	ATGCAT	2 cut(s)	318, 327
MroNI	GCCGGC	2 cut(s)	215, 268
MseI	TTAA	3 cut(s)	255, 501, 544
MslI	CAYNNNNRTG	1 cut(s)	380
MspA1I	CMGCKG	1 cut(s)	133
MspCI	CTTAAG	1 cut(s)	500
MspI	CCGG	5 cut(s)	216, 241, 261, 269, 444
MspR9I	CCNGG	3 cut(s)	140, 242, 445
MvaI	CCWGG	1 cut(s)	140
MwoI	GCNNNNNNNGC	5 cut(s)	72, 225, 234, 298, 322
NaeI	GCCGGC	2 cut(s)	217, 270
NciI	CCSGG	2 cut(s)	242, 445
NdeII	GATC	3 cut(s)	57, 346, 483
NgoMIV	GCCGGC	2 cut(s)	215, 268
NlaIII	CATG	6 cut(s)	58, 211, 286, 316, 320, 325
NmuCI	GTSAC	1 cut(s)	517
NsiI	ATGCAT	2 cut(s)	318, 327
NspI	RCATGY	3 cut(s)	211, 316, 320
OliI	CACNNNNGTG	1 cut(s)	380
PaeI	GCATGC	1 cut(s)	211
PaeR7I	CTCGAG	1 cut(s)	103
PagI	TCATGA	1 cut(s)	54
PdiI	GCCGGC	2 cut(s)	217, 270
PfeI	GAWTC	1 cut(s)	415
PfoI	TCCNGGA	1 cut(s)	240
PkrI	GCNGC	7 cut(s)	65, 135, 203, 206, 452, 494, 535
Psp124BI	GAGCTC	1 cut(s)	303
Psp6I	CCWGG	1 cut(s)	138
PspGI	CCWGG	1 cut(s)	138
PspPI	GGNCC	1 cut(s)	147
PspXI	VCTCGAGB	1 cut(s)	103
PstI	CTGCAG	1 cut(s)	206
RseI	CAYNNNNRTG	1 cut(s)	380
SacI	GAGCTC	1 cut(s)	303
SaqAI	TTAA	3 cut(s)	255, 501, 544
SatI	GCNGC	7 cut(s)	64, 134, 202, 205, 451, 493, 534
Sau3AI	GATC	3 cut(s)	57, 346, 483
Sau96I	GGNCC	1 cut(s)	147
ScrFI	CCNGG	3 cut(s)	140, 242, 445
SduI	GDGCHC	2 cut(s)	303, 387
SetI	ASST	4 cut(s)	54, 68, 203, 303
SfaNI	GCATC	2 cut(s)	237, 246
SfcI	CTRYAG	1 cut(s)	202
Sfr274I	CTCGAG	1 cut(s)	103
SinI	GGWCC	1 cut(s)	147
SlaI	CTCGAG	1 cut(s)	103
SmiMI	CAYNNNNRTG	1 cut(s)	380
SmlI	CTYRAG	3 cut(s)	103, 174, 500
SmoI	CTYRAG	3 cut(s)	103, 174, 500
SphI	GCATGC	1 cut(s)	211
Sse9I	AATT	3 cut(s)	161, 361, 541
SsiI	CCGC	2 cut(s)	131, 157
SstI	GAGCTC	1 cut(s)	303
StyD4I	CCNGG	3 cut(s)	138, 240, 443
TaaI	ACNGT	2 cut(s)	368, 382
TaqI	TCGA	4 cut(s)	104, 123, 165, 303
TasI	AATT	3 cut(s)	161, 361, 541
TfiI	GAWTC	1 cut(s)	415
Tru1I	TTAA	3 cut(s)	255, 501, 544
Tru9I	TTAA	3 cut(s)	255, 501, 544
TscAI	CASTG	1 cut(s)	101
TseFI	GTSAC	1 cut(s)	517
TseI	GCWGC	7 cut(s)	63, 133, 201, 204, 450, 492, 533
Tsp45I	GTSAC	1 cut(s)	517
TspDTI	ATGAA	1 cut(s)	181
TspGWI	ACGGA	2 cut(s)	139, 402
TspRI	CASTG	1 cut(s)	101
Vha464I	CTTAAG	1 cut(s)	500
VneI	GTGCAC	1 cut(s)	383
VpaK11BI	GGWCC	1 cut(s)	147
XceI	RCATGY	3 cut(s)	211, 316, 320
XhoI	CTCGAG	1 cut(s)	103
Zsp2I	ATGCAT	2 cut(s)	318, 327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.