Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001895.1

Orthogroup ID

OG0003913

Physical Location & Seq

Genomic Coordinates Forward (+)

20310 .. 20612

Gene Structure 303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001895.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

atggataagcaagatagtcaccataaccaagccctcttgccaaaccagtgtggctcaagccatagccaaaccatagacgcaccactccccttagtttggtccataatccgccaattcgacaaccctcaggcccacaagcagttcatcaagagctgcaccatgcgcgccggcgacggcggcaccgccgggagcatacgtgaggttatagtcagctccggcttgccggggagtagcagcatggagaggcttgacaagctcgacgacgttgaacaaatagaatatgcaagctgcgtagaaatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007154 GO:0007165 GO:0008150 GO:0008289 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009892 GO:0009987 GO:0010033 GO:0010427 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019840 GO:0019888 GO:0023052 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031406 GO:0032268 GO:0032269 GO:0032515 GO:0032870 GO:0033293 GO:0033993 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0036094 GO:0038023 GO:0042221 GO:0042562 GO:0042802 GO:0042803 GO:0043086 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0044092 GO:0044424 GO:0044464 GO:0045936 GO:0046983 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0098772 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Polyketide_cyc2

Protein Analysis

100

Amino Acids

10.92

Weight (kDa)

5.13

Isoelectric Point (pI)

55.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45860 AT5G45870
fragaria_vesca	FvH4_3g07710 FvH4_3g07720 FvH4_3g07731
malus_domestica	MD05G1300200.v1.1
prunus_persica	Prupe.4G062100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0010891 RchiOBHm_Chr5g0010921
rosa_laevigata	RLG00000031795 RLG00000031796 RLG00000031797
rosa_multiflora	Rmu_co8447663.1_g000001 Rmu_sc0000109.1_g000001 Rmu_sc0001895.1_g000005 Rmu_sc0001895.1_g000006
rosa_roxburghii	Rroxscaffold_1G00065450 Rroxscaffold_1G00065460 Rroxscaffold_1G00065470
rosa_rugosa	Rorug04G0453600 Rorug04G0453700 Rorug04G0453800
rosa_samantha	Rh5AG086300 Rh5BG080600 Rh5BG080700 Rh5BG080800 Rh5CG093000 Rh5CG093300 Rh5DG080800 Rh5DG080900
rosa_wichuraiana	Rw0G017440 Rw0G017450 Rw0G017890 Rw0G017900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	179
AccII	CGCG	1 cut(s)	165
AciI	CCGC	3 cut(s)	109, 177, 183
AfiI	CCNNNNNNNGG	1 cut(s)	96
AgsI	TTSAA	1 cut(s)	269
AluBI	AGCT	4 cut(s)	153, 213, 256, 288
AluI	AGCT	4 cut(s)	153, 213, 256, 288
AoxI	GGCC	1 cut(s)	129
ApeKI	GCWGC	3 cut(s)	153, 234, 288
AspLEI	GCGC	2 cut(s)	165, 167
AspS9I	GGNCC	2 cut(s)	99, 130
AsuC2I	CCSGG	2 cut(s)	187, 225
AsuHPI	GGTGA	1 cut(s)	11
AvaII	GGWCC	1 cut(s)	99
AxyI	CCTNAGG	1 cut(s)	126
BanI	GGYRCC	1 cut(s)	179
BbvI	GCAGC	3 cut(s)	140, 246, 275
BceAI	ACGGC	1 cut(s)	190
BcnI	CCSGG	2 cut(s)	187, 225
BfaI	CTAG	1 cut(s)	301
BisI	GCNGC	4 cut(s)	154, 178, 235, 289
BlsI	GCNGC	4 cut(s)	155, 179, 236, 290
Bme1390I	CCNGG	2 cut(s)	187, 225
Bme18I	GGWCC	1 cut(s)	99
BmgT120I	GGNCC	2 cut(s)	99, 130
BmiI	GGNNCC	1 cut(s)	181
BmrFI	CCNGG	2 cut(s)	187, 225
BpuEI	CTTGAG	1 cut(s)	40
BpuMI	CCSGG	2 cut(s)	187, 225
BsaAI	YACGTR	1 cut(s)	197
BsaJI	CCNNGG	1 cut(s)	224
BsaXI	ACNNNNNCTCC	2 cut(s)	181, 211
Bsc4I	CCNNNNNNNGG	1 cut(s)	96
Bse118I	RCCGGY	1 cut(s)	167
Bse1I	ACTGG	1 cut(s)	46
Bse21I	CCTNAGG	1 cut(s)	126
BseDI	CCNNGG	1 cut(s)	224
BseLI	CCNNNNNNNGG	1 cut(s)	96
BseMII	CTCAG	1 cut(s)	140
BseNI	ACTGG	1 cut(s)	46
BsePI	GCGCGC	1 cut(s)	163
BseXI	GCAGC	3 cut(s)	140, 246, 275
BsgI	GTGCAG	1 cut(s)	139
Bsh1236I	CGCG	1 cut(s)	165
BshFI	GGCC	1 cut(s)	131
BshNI	GGYRCC	1 cut(s)	179
BsiSI	CCGG	4 cut(s)	168, 186, 216, 224
BslI	CCNNNNNNNGG	1 cut(s)	96
BsnI	GGCC	1 cut(s)	131
BspACI	CCGC	3 cut(s)	109, 177, 183
BspANI	GGCC	1 cut(s)	131
BspCNI	CTCAG	1 cut(s)	139
BspFNI	CGCG	1 cut(s)	165
BspLI	GGNNCC	1 cut(s)	181
BspT107I	GGYRCC	1 cut(s)	179
BsrFI	RCCGGY	1 cut(s)	167
BsrI	ACTGG	1 cut(s)	46
BssAI	RCCGGY	1 cut(s)	167
BssECI	CCNNGG	1 cut(s)	224
BssHII	GCGCGC	1 cut(s)	163
BstBAI	YACGTR	1 cut(s)	197
BstC8I	GCNNGC	4 cut(s)	165, 169, 221, 286
BstDEI	CTNAG	2 cut(s)	91, 126
BstFNI	CGCG	1 cut(s)	165
BstHHI	GCGC	2 cut(s)	165, 167
BstMWI	GCNNNNNNNGC	3 cut(s)	162, 177, 253
BstSCI	CCNGG	2 cut(s)	185, 223
BstUI	CGCG	1 cut(s)	165
BstV1I	GCAGC	3 cut(s)	140, 246, 275
Bsu36I	CCTNAGG	1 cut(s)	126
BsuRI	GGCC	1 cut(s)	131
BtsIMutI	CAGTG	1 cut(s)	53
Cac8I	GCNNGC	4 cut(s)	165, 169, 221, 286
CfoI	GCGC	2 cut(s)	165, 167
Cfr10I	RCCGGY	1 cut(s)	167
Cfr13I	GGNCC	2 cut(s)	99, 130
CseI	GACGC	1 cut(s)	86
CviAII	CATG	2 cut(s)	160, 238
DdeI	CTNAG	2 cut(s)	91, 126
EciI	GGCGGA	1 cut(s)	98
Eco47I	GGWCC	1 cut(s)	99
Eco81I	CCTNAGG	1 cut(s)	126
FaeI	CATG	2 cut(s)	163, 241
FaiI	YATR	9 cut(s)	24, 63, 74, 104, 161, 194, 206, 239, 282
FatI	CATG	2 cut(s)	159, 237
Fnu4HI	GCNGC	4 cut(s)	154, 178, 235, 289
Fsp4HI	GCNGC	4 cut(s)	154, 178, 235, 289
FspBI	CTAG	1 cut(s)	301
GlaI	GCGC	2 cut(s)	164, 166
GluI	GCNGC	4 cut(s)	154, 178, 235, 289
HaeIII	GGCC	1 cut(s)	131
HapII	CCGG	4 cut(s)	168, 186, 216, 224
HgaI	GACGC	1 cut(s)	86
HhaI	GCGC	2 cut(s)	165, 167
Hin1II	CATG	2 cut(s)	163, 241
Hin6I	GCGC	2 cut(s)	163, 165
HinP1I	GCGC	2 cut(s)	163, 165
HpaII	CCGG	4 cut(s)	168, 186, 216, 224
HphI	GGTGA	1 cut(s)	11
Hpy188III	TCNNGA	1 cut(s)	148
Hpy99I	CGWCG	3 cut(s)	176, 263, 266
HpyCH4IV	ACGT	2 cut(s)	196, 264
HpyCH4V	TGCA	2 cut(s)	156, 284
HpyF10VI	GCNNNNNNNGC	3 cut(s)	162, 177, 253
HpyF3I	CTNAG	2 cut(s)	91, 126
HpySE526I	ACGT	2 cut(s)	196, 264
Hsp92II	CATG	2 cut(s)	163, 241
HspAI	GCGC	2 cut(s)	163, 165
KroI	GCCGGC	1 cut(s)	167
KroNI	GCCGGC	1 cut(s)	169
LmnI	GCTCC	2 cut(s)	189, 218
LpnPI	CCDG	6 cut(s)	59, 113, 181, 199, 229, 237
Lsp1109I	GCAGC	3 cut(s)	140, 246, 275
MaeI	CTAG	1 cut(s)	301
MaeII	ACGT	2 cut(s)	196, 264
MaeIII	GTNAC	1 cut(s)	17
MluCI	AATT	1 cut(s)	113
MnlI	CCTC	4 cut(s)	44, 135, 193, 237
MreI	CGCCGGCG	1 cut(s)	167
MroNI	GCCGGC	1 cut(s)	167
MspI	CCGG	4 cut(s)	168, 186, 216, 224
MspR9I	CCNGG	2 cut(s)	187, 225
MvnI	CGCG	1 cut(s)	165
MwoI	GCNNNNNNNGC	3 cut(s)	162, 177, 253
NaeI	GCCGGC	1 cut(s)	169
NciI	CCSGG	2 cut(s)	187, 225
NgoMIV	GCCGGC	1 cut(s)	167
NlaIII	CATG	2 cut(s)	163, 241
NlaIV	GGNNCC	1 cut(s)	181
NmuCI	GTSAC	1 cut(s)	17
PauI	GCGCGC	1 cut(s)	163
PdiI	GCCGGC	1 cut(s)	169
PkrI	GCNGC	4 cut(s)	155, 179, 236, 290
Ppu21I	YACGTR	1 cut(s)	197
PspN4I	GGNNCC	1 cut(s)	181
PspPI	GGNCC	2 cut(s)	99, 130
PteI	GCGCGC	1 cut(s)	163
SatI	GCNGC	4 cut(s)	154, 178, 235, 289
Sau96I	GGNCC	2 cut(s)	99, 130
ScrFI	CCNGG	2 cut(s)	187, 225
SetI	ASST	7 cut(s)	155, 199, 204, 215, 258, 267, 290
SgrAI	CRCCGGYG	1 cut(s)	167
SinI	GGWCC	1 cut(s)	99
SmlI	CTYRAG	1 cut(s)	55
SmoI	CTYRAG	1 cut(s)	55
Sse9I	AATT	1 cut(s)	113
SsiI	CCGC	3 cut(s)	109, 177, 183
SspMI	CTAG	1 cut(s)	301
StyD4I	CCNGG	2 cut(s)	185, 223
TaiI	ACGT	2 cut(s)	199, 267
TaqI	TCGA	2 cut(s)	117, 258
TasI	AATT	1 cut(s)	113
TauI	GCSGC	1 cut(s)	180
TscAI	CASTG	1 cut(s)	53
TseFI	GTSAC	1 cut(s)	17
TseI	GCWGC	3 cut(s)	153, 234, 288
Tsp45I	GTSAC	1 cut(s)	17
TspDTI	ATGAA	1 cut(s)	133
TspRI	CASTG	1 cut(s)	53
VpaK11BI	GGWCC	1 cut(s)	99
XspI	CTAG	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.