Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003913

Physical Location & Seq

Genomic Coordinates Reverse (-)

87132099 .. 87132581

Gene Structure 483 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00065470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGAGAGCTACCATAGCCATGCCCTCTTACCAAACCAGTGTGGCTCGAGCCTGGTCCAGAACATAGATGCACCACTTCCTCTGGTTTGGTCAATCCTTCGCCAGTTCGATAACCCTCAAGCCTACAAGCAGTTCATAAGGAGCTGCACAATGCGCGCTGGGGATGGAGGCATAGGAAGCATACGTGAAGTGATGGTCAGCACTGGCTTACCTGCCAAAACCAGCATGGAGAGGCTCGACAAGCTTGATGATGACAAGCATGTCCTTGATTTCAGCATTGTTGGCGGAGAACACAAGCTGGTGAATTACAGTTCTACTACGATGGTGCAAGAGAAAGGTAGAAAGACTGTTGTGACTCAGTCTTATGTGGTGGATGTCCCTGCTGGGAGTAGTAAAGAGGATACTTGCTTGTTTGCTAATAGTATCATAGAGTGCAACCTCAGGTCACTGGCTAAAGTCACAGAAAGGATGGCTGCTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007154 GO:0007165 GO:0008150 GO:0008289 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009892 GO:0009987 GO:0010033 GO:0010427 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019840 GO:0019888 GO:0023052 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031406 GO:0032268 GO:0032269 GO:0032515 GO:0032870 GO:0033293 GO:0033993 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0036094 GO:0038023 GO:0042221 GO:0042562 GO:0042802 GO:0042803 GO:0043086 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0044092 GO:0044424 GO:0044464 GO:0045936 GO:0046983 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0098772 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Polyketide_cyc2

Protein Analysis

160

Amino Acids

17.61

Weight (kDa)

6.41

Isoelectric Point (pI)

48.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Polyketide_cyc2	PF10604	20 - 155	1.3e-14	Polyketide cyclase / dehydrase and lipid transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45860 AT5G45870
fragaria_vesca	FvH4_3g07710 FvH4_3g07720 FvH4_3g07731
malus_domestica	MD05G1300200.v1.1
prunus_persica	Prupe.4G062100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0010891 RchiOBHm_Chr5g0010921
rosa_laevigata	RLG00000031795 RLG00000031796 RLG00000031797
rosa_multiflora	Rmu_co8447663.1_g000001 Rmu_sc0000109.1_g000001 Rmu_sc0001895.1_g000005 Rmu_sc0001895.1_g000006
rosa_roxburghii	Rroxscaffold_1G00065450 Rroxscaffold_1G00065460 Rroxscaffold_1G00065470
rosa_rugosa	Rorug04G0453600 Rorug04G0453700 Rorug04G0453800
rosa_samantha	Rh5AG086300 Rh5BG080600 Rh5BG080700 Rh5BG080800 Rh5CG093000 Rh5CG093300 Rh5DG080800 Rh5DG080900
rosa_wichuraiana	Rw0G017440 Rw0G017450 Rw0G017890 Rw0G017900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	260
Acc36I	ACCTGC	1 cut(s)	220
AccII	CGCG	1 cut(s)	156
AciI	CCGC	1 cut(s)	285
AjnI	CCWGG	1 cut(s)	51
AluBI	AGCT	4 cut(s)	9, 144, 244, 298
AluI	AGCT	4 cut(s)	9, 144, 244, 298
Ama87I	CYCGRG	1 cut(s)	46
ApeKI	GCWGC	2 cut(s)	144, 473
AspLEI	GCGC	2 cut(s)	156, 158
AspS9I	GGNCC	1 cut(s)	55
AsuHPI	GGTGA	1 cut(s)	313
AvaI	CYCGRG	1 cut(s)	46
AvaII	GGWCC	1 cut(s)	55
AxyI	CCTNAGG	1 cut(s)	440
BbvI	GCAGC	2 cut(s)	131, 460
BccI	CCATC	4 cut(s)	158, 187, 316, 463
BciT130I	CCWGG	1 cut(s)	53
BciVI	GTATCC	1 cut(s)	394
BfuAI	ACCTGC	1 cut(s)	220
BfuI	GTATCC	1 cut(s)	394
BisI	GCNGC	2 cut(s)	145, 474
BlsI	GCNGC	2 cut(s)	146, 475
Bme1390I	CCNGG	1 cut(s)	53
Bme18I	GGWCC	1 cut(s)	55
BmeT110I	CYCGRG	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	55
BmrFI	CCNGG	1 cut(s)	53
BmsI	GCATC	1 cut(s)	58
BpuEI	CTTGAG	1 cut(s)	102
BsaAI	YACGTR	1 cut(s)	185
Bse1I	ACTGG	4 cut(s)	37, 103, 208, 453
Bse21I	CCTNAGG	1 cut(s)	440
BseBI	CCWGG	1 cut(s)	53
BseGI	GGATG	3 cut(s)	169, 379, 474
BseMII	CTCAG	2 cut(s)	371, 454
BseNI	ACTGG	4 cut(s)	37, 103, 208, 453
BsePI	GCGCGC	1 cut(s)	154
BseXI	GCAGC	2 cut(s)	131, 460
BseYI	CCCAGC	2 cut(s)	158, 383
BsgI	GTGCAG	1 cut(s)	130
Bsh1236I	CGCG	1 cut(s)	156
BsiHKCI	CYCGRG	1 cut(s)	46
BslFI	GGGAC	1 cut(s)	362
BsmFI	GGGAC	1 cut(s)	362
BsoBI	CYCGRG	1 cut(s)	46
BspACI	CCGC	1 cut(s)	285
BspCNI	CTCAG	2 cut(s)	370, 453
BspFNI	CGCG	1 cut(s)	156
BspMI	ACCTGC	1 cut(s)	220
BsrI	ACTGG	4 cut(s)	37, 103, 208, 453
BssHII	GCGCGC	1 cut(s)	154
Bst2UI	CCWGG	1 cut(s)	53
Bst4CI	ACNGT	2 cut(s)	311, 349
BstBAI	YACGTR	1 cut(s)	185
BstC8I	GCNNGC	1 cut(s)	156
BstDEI	CTNAG	2 cut(s)	357, 440
BstF5I	GGATG	3 cut(s)	169, 379, 474
BstFNI	CGCG	1 cut(s)	156
BstHHI	GCGC	2 cut(s)	156, 158
BstMWI	GCNNNNNNNGC	5 cut(s)	15, 153, 177, 241, 282
BstNI	CCWGG	1 cut(s)	53
BstNSI	RCATGY	1 cut(s)	263
BstSCI	CCNGG	1 cut(s)	51
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	2 cut(s)	131, 460
Bsu36I	CCTNAGG	1 cut(s)	440
BsuI	GTATCC	1 cut(s)	394
BtsCI	GGATG	3 cut(s)	169, 379, 474
BtsIMutI	CAGTG	3 cut(s)	44, 201, 446
BveI	ACCTGC	1 cut(s)	220
Cac8I	GCNNGC	1 cut(s)	156
CfoI	GCGC	2 cut(s)	156, 158
Cfr13I	GGNCC	1 cut(s)	55
CviAII	CATG	3 cut(s)	20, 226, 260
DdeI	CTNAG	2 cut(s)	357, 440
DrdI	GACNNNNNNGTC	1 cut(s)	260
DseDI	GACNNNNNNGTC	1 cut(s)	260
EciI	GGCGGA	1 cut(s)	300
Eco47I	GGWCC	1 cut(s)	55
Eco81I	CCTNAGG	1 cut(s)	440
Eco88I	CYCGRG	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	51
FaeI	CATG	3 cut(s)	23, 229, 263
FaqI	GGGAC	1 cut(s)	362
FatI	CATG	3 cut(s)	19, 225, 259
Fnu4HI	GCNGC	2 cut(s)	145, 474
FokI	GGATG	2 cut(s)	176, 386
Fsp4HI	GCNGC	2 cut(s)	145, 474
GlaI	GCGC	2 cut(s)	155, 157
GluI	GCNGC	2 cut(s)	145, 474
GsaI	CCCAGC	2 cut(s)	162, 387
HhaI	GCGC	2 cut(s)	156, 158
Hin1II	CATG	3 cut(s)	23, 229, 263
Hin6I	GCGC	2 cut(s)	154, 156
HinP1I	GCGC	2 cut(s)	154, 156
HindIII	AAGCTT	1 cut(s)	242
HinfI	GANTC	1 cut(s)	355
HphI	GGTGA	1 cut(s)	313
Hpy188III	TCNNGA	1 cut(s)	58
HpyAV	CCTTC	1 cut(s)	107
HpyCH4III	ACNGT	2 cut(s)	311, 349
HpyCH4IV	ACGT	1 cut(s)	184
HpyCH4V	TGCA	4 cut(s)	71, 147, 328, 435
HpyF10VI	GCNNNNNNNGC	5 cut(s)	15, 153, 177, 241, 282
HpyF3I	CTNAG	2 cut(s)	357, 440
HpySE526I	ACGT	1 cut(s)	184
Hsp92II	CATG	3 cut(s)	23, 229, 263
HspAI	GCGC	2 cut(s)	154, 156
LmnI	GCTCC	1 cut(s)	141
Lsp1109I	GCAGC	2 cut(s)	131, 460
LweI	GCATC	1 cut(s)	58
MaeII	ACGT	1 cut(s)	184
MaeIII	GTNAC	3 cut(s)	352, 444, 457
MluCI	AATT	2 cut(s)	304, 478
MlyI	GAGTC	1 cut(s)	349
MnlI	CCTC	7 cut(s)	35, 90, 126, 161, 225, 391, 449
MslI	CAYNNNNRTG	1 cut(s)	18
MspR9I	CCNGG	1 cut(s)	53
MvaI	CCWGG	1 cut(s)	53
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	5 cut(s)	15, 153, 177, 241, 282
NlaIII	CATG	3 cut(s)	23, 229, 263
NmuCI	GTSAC	3 cut(s)	352, 444, 457
NspI	RCATGY	1 cut(s)	263
PaeR7I	CTCGAG	1 cut(s)	46
PauI	GCGCGC	1 cut(s)	154
PflFI	GACNNNGTC	1 cut(s)	358
PkrI	GCNGC	2 cut(s)	146, 475
PleI	GAGTC	1 cut(s)	349
PpsI	GAGTC	1 cut(s)	349
Ppu21I	YACGTR	1 cut(s)	185
Psp6I	CCWGG	1 cut(s)	51
PspFI	CCCAGC	2 cut(s)	158, 383
PspGI	CCWGG	1 cut(s)	51
PspPI	GGNCC	1 cut(s)	55
PspXI	VCTCGAGB	1 cut(s)	46
PsyI	GACNNNGTC	1 cut(s)	358
PteI	GCGCGC	1 cut(s)	154
RseI	CAYNNNNRTG	1 cut(s)	18
SatI	GCNGC	2 cut(s)	145, 474
Sau96I	GGNCC	1 cut(s)	55
SchI	GAGTC	1 cut(s)	349
ScrFI	CCNGG	1 cut(s)	53
SetI	ASST	9 cut(s)	11, 146, 187, 214, 246, 300, 340, 441, 446
SfaNI	GCATC	1 cut(s)	58
Sfr274I	CTCGAG	1 cut(s)	46
SinI	GGWCC	1 cut(s)	55
SlaI	CTCGAG	1 cut(s)	46
SmiMI	CAYNNNNRTG	1 cut(s)	18
SmlI	CTYRAG	2 cut(s)	46, 117
SmoI	CTYRAG	2 cut(s)	46, 117
Sse9I	AATT	2 cut(s)	304, 478
SsiI	CCGC	1 cut(s)	285
StyD4I	CCNGG	1 cut(s)	51
TaaI	ACNGT	2 cut(s)	311, 349
TaiI	ACGT	1 cut(s)	187
TaqI	TCGA	3 cut(s)	47, 108, 237
TasI	AATT	2 cut(s)	304, 478
TscAI	CASTG	3 cut(s)	44, 208, 453
TseFI	GTSAC	3 cut(s)	352, 444, 457
TseI	GCWGC	2 cut(s)	144, 473
Tsp45I	GTSAC	3 cut(s)	352, 444, 457
TspDTI	ATGAA	1 cut(s)	124
TspRI	CASTG	3 cut(s)	44, 208, 453
Tth111I	GACNNNGTC	1 cut(s)	358
VpaK11BI	GGWCC	1 cut(s)	55
XceI	RCATGY	1 cut(s)	263
XcmI	CCANNNNNNNNNTGG	1 cut(s)	223
XhoI	CTCGAG	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.