Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003913

Physical Location & Seq

Genomic Coordinates Reverse (-)

4536379 .. 4539552

Gene Structure 3174 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g07731.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGAGAGCTACCATATTCATGCCCTCTTACCAAACCAGTGTGGCTCAAGCCTGGTCCAGACCATAGATGCTCCGCTTTCTCTCGTTTGGTCAGTCATTCGCCAGTTTGATAATCCTCAAGCCTACAAGCAGTTCATAAGCAGCTGCAAAATGTGTGCCGGGGACGGAGGCATAGGAAGCATACGTGAAGTGATGATAAGCACCGGCTTACCGGCCAAAACCAGCATGGAGAGGCTCGACAAGCTTGATGATGACAACCATGTCATGGATTTCAGCATTGTTGGGGGAGAACACAAGCTGGTGAATTACAGTTCTACTACGACGGTGCAAGAAGAGAAGGGTAGAAAGTGTGTTGTGATTCAATCTTATGTGGTGGATGTCCCTGCTGGGAGTAGTAAGGAAGACACTTGCTTGTTTGCTAATACCATCATAGAGTGCAACCTTAGGTCACTGGCGAAGGTTTCAGAAAGGATGGCTGCTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007154 GO:0007165 GO:0008150 GO:0008289 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009892 GO:0009987 GO:0010033 GO:0010427 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019840 GO:0019888 GO:0023052 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031406 GO:0032268 GO:0032269 GO:0032515 GO:0032870 GO:0033293 GO:0033993 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0036094 GO:0038023 GO:0042221 GO:0042562 GO:0042802 GO:0042803 GO:0043086 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0044092 GO:0044424 GO:0044464 GO:0045936 GO:0046983 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0098772 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Polyketide_cyc2

Protein Analysis

162

Amino Acids

17.63

Weight (kDa)

5.52

Isoelectric Point (pI)

47.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Polyketide_cyc2	PF10604	19 - 156	2.4e-15	Polyketide cyclase / dehydrase and lipid transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45860 AT5G45870
fragaria_vesca	FvH4_3g07710 FvH4_3g07720 FvH4_3g07731
malus_domestica	MD05G1300200.v1.1
prunus_persica	Prupe.4G062100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0010891 RchiOBHm_Chr5g0010921
rosa_laevigata	RLG00000031795 RLG00000031796 RLG00000031797
rosa_multiflora	Rmu_co8447663.1_g000001 Rmu_sc0000109.1_g000001 Rmu_sc0001895.1_g000005 Rmu_sc0001895.1_g000006
rosa_roxburghii	Rroxscaffold_1G00065450 Rroxscaffold_1G00065460 Rroxscaffold_1G00065470
rosa_rugosa	Rorug04G0453600 Rorug04G0453700 Rorug04G0453800
rosa_samantha	Rh5AG086300 Rh5BG080600 Rh5BG080700 Rh5BG080800 Rh5CG093000 Rh5CG093300 Rh5DG080800 Rh5DG080900
rosa_wichuraiana	Rw0G017440 Rw0G017450 Rw0G017890 Rw0G017900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	260
AccB7I	CCANNNNNTGG	1 cut(s)	265
AciI	CCGC	1 cut(s)	74
AcoI	YGGCCR	1 cut(s)	213
AfiI	CCNNNNNNNGG	1 cut(s)	265
AgsI	TTSAA	1 cut(s)	362
AjnI	CCWGG	1 cut(s)	51
AluBI	AGCT	4 cut(s)	9, 144, 244, 298
AluI	AGCT	4 cut(s)	9, 144, 244, 298
AoxI	GGCC	1 cut(s)	213
ApeKI	GCWGC	3 cut(s)	141, 144, 476
AspS9I	GGNCC	1 cut(s)	55
AsuC2I	CCSGG	1 cut(s)	160
AsuHPI	GGTGA	1 cut(s)	313
AvaII	GGWCC	1 cut(s)	55
AxyI	CCTNAGG	1 cut(s)	443
BbsI	GAAGAC	1 cut(s)	408
BbvI	GCAGC	3 cut(s)	131, 153, 463
BccI	CCATC	2 cut(s)	434, 466
BciT130I	CCWGG	1 cut(s)	53
BcnI	CCSGG	1 cut(s)	160
BisI	GCNGC	3 cut(s)	142, 145, 477
BlsI	GCNGC	3 cut(s)	143, 146, 478
Bme1390I	CCNGG	2 cut(s)	53, 160
Bme18I	GGWCC	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	55
BmrFI	CCNGG	2 cut(s)	53, 160
BmsI	GCATC	1 cut(s)	58
BpiI	GAAGAC	1 cut(s)	408
BpuEI	CTTGAG	2 cut(s)	31, 102
BpuMI	CCSGG	1 cut(s)	160
BsaAI	YACGTR	1 cut(s)	185
BsaJI	CCNNGG	1 cut(s)	159
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
Bse118I	RCCGGY	2 cut(s)	203, 211
Bse1I	ACTGG	3 cut(s)	37, 103, 456
Bse21I	CCTNAGG	1 cut(s)	443
BseBI	CCWGG	1 cut(s)	53
BseDI	CCNNGG	1 cut(s)	159
BseGI	GGATG	2 cut(s)	382, 477
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseNI	ACTGG	3 cut(s)	37, 103, 456
BseXI	GCAGC	3 cut(s)	131, 153, 463
BseYI	CCCAGC	1 cut(s)	386
BshFI	GGCC	1 cut(s)	215
BsiSI	CCGG	3 cut(s)	159, 204, 212
BslFI	GGGAC	2 cut(s)	176, 365
BslI	CCNNNNNNNGG	1 cut(s)	265
BsmFI	GGGAC	2 cut(s)	176, 365
BsnI	GGCC	1 cut(s)	215
BspACI	CCGC	1 cut(s)	74
BspANI	GGCC	1 cut(s)	215
BsrFI	RCCGGY	2 cut(s)	203, 211
BsrI	ACTGG	3 cut(s)	37, 103, 456
BssAI	RCCGGY	2 cut(s)	203, 211
BssECI	CCNNGG	1 cut(s)	159
Bst2UI	CCWGG	1 cut(s)	53
Bst4CI	ACNGT	2 cut(s)	311, 325
Bst6I	CTCTTC	1 cut(s)	327
BstBAI	YACGTR	1 cut(s)	185
BstDEI	CTNAG	1 cut(s)	443
BstF5I	GGATG	2 cut(s)	382, 477
BstMWI	GCNNNNNNNGC	2 cut(s)	177, 241
BstNI	CCWGG	1 cut(s)	53
BstSCI	CCNGG	2 cut(s)	51, 158
BstV1I	GCAGC	3 cut(s)	131, 153, 463
BstV2I	GAAGAC	1 cut(s)	408
Bsu36I	CCTNAGG	1 cut(s)	443
BsuRI	GGCC	1 cut(s)	215
BtsCI	GGATG	2 cut(s)	382, 477
BtsIMutI	CAGTG	2 cut(s)	44, 449
Cfr10I	RCCGGY	2 cut(s)	203, 211
Cfr13I	GGNCC	1 cut(s)	55
CviAII	CATG	4 cut(s)	20, 226, 260, 265
DdeI	CTNAG	1 cut(s)	443
DrdI	GACNNNNNNGTC	1 cut(s)	260
DseDI	GACNNNNNNGTC	1 cut(s)	260
EaeI	YGGCCR	1 cut(s)	213
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Eco47I	GGWCC	1 cut(s)	55
Eco81I	CCTNAGG	1 cut(s)	443
EcoRII	CCWGG	1 cut(s)	51
FaeI	CATG	4 cut(s)	23, 229, 263, 268
FaqI	GGGAC	2 cut(s)	176, 365
FatI	CATG	4 cut(s)	19, 225, 259, 264
Fnu4HI	GCNGC	3 cut(s)	142, 145, 477
FokI	GGATG	1 cut(s)	389
Fsp4HI	GCNGC	3 cut(s)	142, 145, 477
GluI	GCNGC	3 cut(s)	142, 145, 477
GsaI	CCCAGC	1 cut(s)	390
HaeIII	GGCC	1 cut(s)	215
HapII	CCGG	3 cut(s)	159, 204, 212
Hin1II	CATG	4 cut(s)	23, 229, 263, 268
HindIII	AAGCTT	1 cut(s)	242
HinfI	GANTC	1 cut(s)	358
HpaII	CCGG	3 cut(s)	159, 204, 212
HphI	GGTGA	1 cut(s)	313
Hpy188I	TCNGA	1 cut(s)	466
Hpy188III	TCNNGA	1 cut(s)	58
Hpy99I	CGWCG	1 cut(s)	325
HpyAV	CCTTC	2 cut(s)	331, 451
HpyCH4III	ACNGT	2 cut(s)	311, 325
HpyCH4IV	ACGT	1 cut(s)	184
HpyCH4V	TGCA	3 cut(s)	147, 328, 438
HpyF10VI	GCNNNNNNNGC	2 cut(s)	177, 241
HpyF3I	CTNAG	1 cut(s)	443
HpySE526I	ACGT	1 cut(s)	184
Hsp92II	CATG	4 cut(s)	23, 229, 263, 268
LmnI	GCTCC	1 cut(s)	76
Lsp1109I	GCAGC	3 cut(s)	131, 153, 463
LweI	GCATC	1 cut(s)	58
MaeII	ACGT	1 cut(s)	184
MaeIII	GTNAC	1 cut(s)	447
MboII	GAAGA	2 cut(s)	344, 413
MluCI	AATT	1 cut(s)	304
MnlI	CCTC	4 cut(s)	35, 126, 161, 225
MslI	CAYNNNNRTG	1 cut(s)	18
MspA1I	CMGCKG	1 cut(s)	144
MspI	CCGG	3 cut(s)	159, 204, 212
MspR9I	CCNGG	2 cut(s)	53, 160
MvaI	CCWGG	1 cut(s)	53
MwoI	GCNNNNNNNGC	2 cut(s)	177, 241
NciI	CCSGG	1 cut(s)	160
NlaIII	CATG	4 cut(s)	23, 229, 263, 268
NmuCI	GTSAC	1 cut(s)	447
PfeI	GAWTC	1 cut(s)	358
PflMI	CCANNNNNTGG	1 cut(s)	265
PkrI	GCNGC	3 cut(s)	143, 146, 478
Ppu21I	YACGTR	1 cut(s)	185
Psp6I	CCWGG	1 cut(s)	51
PspFI	CCCAGC	1 cut(s)	386
PspGI	CCWGG	1 cut(s)	51
PspPI	GGNCC	1 cut(s)	55
PvuII	CAGCTG	1 cut(s)	144
RseI	CAYNNNNRTG	1 cut(s)	18
SatI	GCNGC	3 cut(s)	142, 145, 477
Sau96I	GGNCC	1 cut(s)	55
ScrFI	CCNGG	2 cut(s)	53, 160
SetI	ASST	8 cut(s)	11, 146, 187, 246, 300, 444, 449, 462
SfaNI	GCATC	1 cut(s)	58
SinI	GGWCC	1 cut(s)	55
SmiMI	CAYNNNNRTG	1 cut(s)	18
SmlI	CTYRAG	2 cut(s)	46, 117
SmoI	CTYRAG	2 cut(s)	46, 117
Sse9I	AATT	1 cut(s)	304
SsiI	CCGC	1 cut(s)	74
StyD4I	CCNGG	2 cut(s)	51, 158
TaaI	ACNGT	2 cut(s)	311, 325
TaiI	ACGT	1 cut(s)	187
TaqI	TCGA	1 cut(s)	237
TasI	AATT	1 cut(s)	304
TfiI	GAWTC	1 cut(s)	358
TscAI	CASTG	2 cut(s)	44, 456
TseFI	GTSAC	1 cut(s)	447
TseI	GCWGC	3 cut(s)	141, 144, 476
Tsp45I	GTSAC	1 cut(s)	447
TspDTI	ATGAA	2 cut(s)	8, 124
TspGWI	ACGGA	1 cut(s)	180
TspRI	CASTG	2 cut(s)	44, 456
Van91I	CCANNNNNTGG	1 cut(s)	265
VpaK11BI	GGWCC	1 cut(s)	55
XcmI	CCANNNNNNNNNTGG	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.