Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003913

Physical Location & Seq

Genomic Coordinates Forward (+)

8290633 .. 8291130

Gene Structure 498 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031796

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGACAGCTACCATATCCATGCCCTCTTGCCAAATCAGTGTGGCTCATGCCTGGTCCAGATCATAGATGCACCACTTCCTCTGGTGTGGTCAATCCTTCGCCAATTTGATAACCCTCGGGTCTACAAGCGCTTCATAAAGAGCTGCACAATGTGCACTGGGGACGGAGGCATACGAAGCATTCGTGAAGTGGTAGTTGCCTCTGGTTTACCTGGTAAAACAAGCATGGAGAGGCTTGACAAGCTCGATGATGAGAAGCATGTCATAAGTATTAGCATTGTTGGTGGTGAACACAAGCTTGTCAACTACAGTTCTACTACGACGGTGCATGTAGAGGAAGAAGAGAAAGGTATGAAGAGTACTGTTGTGATTGAATCTTACGCAGTGGATATTCCTGCTGGGAGTTGTAAAGAGGATACTTGCTTGTTTGCTGATACTATCCTAGGTTGCAACCTTAGGTCACTGGCTAAAGTTGCAGAGAGGATGGGTCGTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007154 GO:0007165 GO:0008150 GO:0008289 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009892 GO:0009987 GO:0010033 GO:0010427 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019840 GO:0019888 GO:0023052 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031406 GO:0032268 GO:0032269 GO:0032515 GO:0032870 GO:0033293 GO:0033993 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0036094 GO:0038023 GO:0042221 GO:0042562 GO:0042802 GO:0042803 GO:0043086 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0044092 GO:0044424 GO:0044464 GO:0045936 GO:0046983 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0098772 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Polyketide_cyc2

Protein Analysis

166

Amino Acids

18.17

Weight (kDa)

6.2

Isoelectric Point (pI)

51.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Polyketide_cyc2	PF10604	21 - 160	8e-12	Polyketide cyclase / dehydrase and lipid transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45860 AT5G45870
fragaria_vesca	FvH4_3g07710 FvH4_3g07720 FvH4_3g07731
malus_domestica	MD05G1300200.v1.1
prunus_persica	Prupe.4G062100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0010891 RchiOBHm_Chr5g0010921
rosa_laevigata	RLG00000031795 RLG00000031796 RLG00000031797
rosa_multiflora	Rmu_co8447663.1_g000001 Rmu_sc0000109.1_g000001 Rmu_sc0001895.1_g000005 Rmu_sc0001895.1_g000006
rosa_roxburghii	Rroxscaffold_1G00065450 Rroxscaffold_1G00065460 Rroxscaffold_1G00065470
rosa_rugosa	Rorug04G0453600 Rorug04G0453700 Rorug04G0453800
rosa_samantha	Rh5AG086300 Rh5BG080600 Rh5BG080700 Rh5BG080800 Rh5CG093000 Rh5CG093300 Rh5DG080800 Rh5DG080900
rosa_wichuraiana	Rw0G017440 Rw0G017450 Rw0G017890 Rw0G017900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	123
AdeI	CACNNNGTG	1 cut(s)	153
AfaI	GTAC	1 cut(s)	361
AfeI	AGCGCT	1 cut(s)	131
AgsI	TTSAA	1 cut(s)	374
AjnI	CCWGG	2 cut(s)	51, 211
AluBI	AGCT	4 cut(s)	9, 144, 244, 298
AluI	AGCT	4 cut(s)	9, 144, 244, 298
Alw21I	GWGCWC	1 cut(s)	158
Alw44I	GTGCAC	1 cut(s)	154
Ama87I	CYCGRG	1 cut(s)	117
Aor51HI	AGCGCT	1 cut(s)	131
ApaLI	GTGCAC	1 cut(s)	154
ApeKI	GCWGC	1 cut(s)	144
AspA2I	CCTAGG	1 cut(s)	442
AspLEI	GCGC	1 cut(s)	132
AspS9I	GGNCC	1 cut(s)	55
AsuHPI	GGTGA	1 cut(s)	299
AvaI	CYCGRG	1 cut(s)	117
AvaII	GGWCC	1 cut(s)	55
AvrII	CCTAGG	1 cut(s)	442
AxyI	CCTNAGG	1 cut(s)	455
BaeGI	GKGCMC	1 cut(s)	158
Bbv12I	GWGCWC	1 cut(s)	158
BbvI	GCAGC	1 cut(s)	131
BccI	CCATC	1 cut(s)	478
BciT130I	CCWGG	2 cut(s)	53, 213
BciVI	GTATCC	1 cut(s)	409
BfaI	CTAG	1 cut(s)	443
BfmI	CTRYAG	1 cut(s)	307
BfoI	RGCGCY	1 cut(s)	133
BfuI	GTATCC	1 cut(s)	409
BisI	GCNGC	1 cut(s)	145
BlnI	CCTAGG	1 cut(s)	442
BlsI	GCNGC	1 cut(s)	146
BmcAI	AGTACT	1 cut(s)	361
Bme1390I	CCNGG	2 cut(s)	53, 213
Bme18I	GGWCC	1 cut(s)	55
BmeT110I	CYCGRG	1 cut(s)	117
BmgT120I	GGNCC	1 cut(s)	55
BmrFI	CCNGG	2 cut(s)	53, 213
BmrI	ACTGGG	1 cut(s)	168
BmsI	GCATC	1 cut(s)	58
BmuI	ACTGGG	1 cut(s)	168
BsaJI	CCNNGG	2 cut(s)	116, 442
Bse1I	ACTGG	2 cut(s)	163, 468
Bse21I	CCTNAGG	1 cut(s)	455
BseBI	CCWGG	2 cut(s)	53, 213
BseDI	CCNNGG	2 cut(s)	116, 442
BseGI	GGATG	1 cut(s)	489
BseNI	ACTGG	2 cut(s)	163, 468
BseSI	GKGCMC	1 cut(s)	158
BseXI	GCAGC	1 cut(s)	131
BseYI	CCCAGC	1 cut(s)	398
BsgI	GTGCAG	1 cut(s)	130
BsiHKAI	GWGCWC	1 cut(s)	158
BsiHKCI	CYCGRG	1 cut(s)	117
BslFI	GGGAC	1 cut(s)	176
BsmFI	GGGAC	1 cut(s)	176
BsmI	GAATGC	1 cut(s)	180
BsoBI	CYCGRG	1 cut(s)	117
Bsp1286I	GDGCHC	1 cut(s)	158
Bsp143I	GATC	1 cut(s)	60
BsrI	ACTGG	2 cut(s)	163, 468
BssECI	CCNNGG	2 cut(s)	116, 442
BssMI	GATC	1 cut(s)	60
BssT1I	CCWWGG	1 cut(s)	442
Bst2UI	CCWGG	2 cut(s)	53, 213
Bst4CI	ACNGT	3 cut(s)	311, 325, 364
Bst6I	CTCTTC	2 cut(s)	336, 350
BstAPI	GCANNNNNTGC	1 cut(s)	153
BstDEI	CTNAG	1 cut(s)	455
BstF5I	GGATG	1 cut(s)	489
BstH2I	RGCGCY	1 cut(s)	133
BstHHI	GCGC	1 cut(s)	132
BstKTI	GATC	1 cut(s)	63
BstMBI	GATC	1 cut(s)	60
BstMWI	GCNNNNNNNGC	4 cut(s)	153, 177, 241, 473
BstNI	CCWGG	2 cut(s)	53, 213
BstNSI	RCATGY	2 cut(s)	263, 332
BstSCI	CCNGG	2 cut(s)	51, 211
BstSFI	CTRYAG	1 cut(s)	307
BstSLI	GKGCMC	1 cut(s)	158
BstV1I	GCAGC	1 cut(s)	131
Bsu36I	CCTNAGG	1 cut(s)	455
BsuI	GTATCC	1 cut(s)	409
BtsCI	GGATG	1 cut(s)	489
BtsI	GCAGTG	1 cut(s)	390
BtsIMutI	CAGTG	4 cut(s)	44, 156, 390, 461
CfoI	GCGC	1 cut(s)	132
Cfr13I	GGNCC	1 cut(s)	55
CsiI	ACCWGGT	1 cut(s)	211
Csp6I	GTAC	1 cut(s)	360
CviAII	CATG	5 cut(s)	20, 48, 226, 260, 329
CviJI	RGCY	7 cut(s)	9, 45, 144, 235, 244, 298, 467
CviKI_1	RGCY	7 cut(s)	9, 45, 144, 235, 244, 298, 467
CviQI	GTAC	1 cut(s)	360
DdeI	CTNAG	1 cut(s)	455
DpnI	GATC	1 cut(s)	62
DpnII	GATC	1 cut(s)	60
DraIII	CACNNNGTG	1 cut(s)	153
Eam1104I	CTCTTC	2 cut(s)	336, 350
EarI	CTCTTC	2 cut(s)	336, 350
Eco130I	CCWWGG	1 cut(s)	442
Eco47I	GGWCC	1 cut(s)	55
Eco47III	AGCGCT	1 cut(s)	131
Eco81I	CCTNAGG	1 cut(s)	455
Eco88I	CYCGRG	1 cut(s)	117
EcoRII	CCWGG	2 cut(s)	51, 211
EcoT14I	CCWWGG	1 cut(s)	442
ErhI	CCWWGG	1 cut(s)	442
FaeI	CATG	5 cut(s)	23, 51, 229, 263, 332
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	5 cut(s)	19, 47, 225, 259, 328
FblI	GTMKAC	1 cut(s)	123
Fnu4HI	GCNGC	1 cut(s)	145
Fsp4HI	GCNGC	1 cut(s)	145
FspBI	CTAG	1 cut(s)	443
GlaI	GCGC	1 cut(s)	131
GluI	GCNGC	1 cut(s)	145
GsaI	CCCAGC	1 cut(s)	402
HaeII	RGCGCY	1 cut(s)	133
HhaI	GCGC	1 cut(s)	132
Hin1II	CATG	5 cut(s)	23, 51, 229, 263, 332
Hin6I	GCGC	1 cut(s)	130
HinP1I	GCGC	1 cut(s)	130
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HindIII	AAGCTT	1 cut(s)	296
HinfI	GANTC	1 cut(s)	374
HphI	GGTGA	1 cut(s)	299
Hpy166II	GTNNAC	5 cut(s)	124, 156, 209, 290, 304
Hpy188III	TCNNGA	2 cut(s)	58, 185
Hpy8I	GTNNAC	5 cut(s)	124, 156, 209, 290, 304
Hpy99I	CGWCG	1 cut(s)	325
HpyAV	CCTTC	1 cut(s)	107
HpyCH4III	ACNGT	3 cut(s)	311, 325, 364
HpyCH4V	TGCA	6 cut(s)	71, 147, 156, 328, 450, 476
HpyF10VI	GCNNNNNNNGC	4 cut(s)	153, 177, 241, 473
HpyF3I	CTNAG	1 cut(s)	455
Hsp92II	CATG	5 cut(s)	23, 51, 229, 263, 332
HspAI	GCGC	1 cut(s)	130
Kzo9I	GATC	1 cut(s)	60
Lsp1109I	GCAGC	1 cut(s)	131
LweI	GCATC	1 cut(s)	58
MabI	ACCWGGT	1 cut(s)	211
MaeI	CTAG	1 cut(s)	443
MaeIII	GTNAC	1 cut(s)	459
MalI	GATC	1 cut(s)	62
MboI	GATC	1 cut(s)	60
MboII	GAAGA	3 cut(s)	350, 353, 367
MhlI	GDGCHC	1 cut(s)	158
MluCI	AATT	2 cut(s)	104, 493
MnlI	CCTC	9 cut(s)	35, 90, 126, 161, 211, 225, 328, 406, 474
MseI	TTAA	1 cut(s)	496
MslI	CAYNNNNRTG	1 cut(s)	18
MspR9I	CCNGG	2 cut(s)	53, 213
Mva1269I	GAATGC	1 cut(s)	180
MvaI	CCWGG	2 cut(s)	53, 213
MwoI	GCNNNNNNNGC	4 cut(s)	153, 177, 241, 473
NdeII	GATC	1 cut(s)	60
NlaIII	CATG	5 cut(s)	23, 51, 229, 263, 332
NmuCI	GTSAC	1 cut(s)	459
NspI	RCATGY	2 cut(s)	263, 332
PcsI	WCGNNNNNNNCGW	1 cut(s)	181
PctI	GAATGC	1 cut(s)	180
PfeI	GAWTC	1 cut(s)	374
PkrI	GCNGC	1 cut(s)	146
Psp6I	CCWGG	2 cut(s)	51, 211
PspFI	CCCAGC	1 cut(s)	398
PspGI	CCWGG	2 cut(s)	51, 211
PspPI	GGNCC	1 cut(s)	55
RsaI	GTAC	1 cut(s)	361
RsaNI	GTAC	1 cut(s)	360
RseI	CAYNNNNRTG	1 cut(s)	18
SaqAI	TTAA	1 cut(s)	496
SatI	GCNGC	1 cut(s)	145
Sau3AI	GATC	1 cut(s)	60
Sau96I	GGNCC	1 cut(s)	55
ScaI	AGTACT	1 cut(s)	361
ScrFI	CCNGG	2 cut(s)	53, 213
SduI	GDGCHC	1 cut(s)	158
SetI	ASST	9 cut(s)	11, 146, 214, 246, 300, 352, 448, 456, 461
SexAI	ACCWGGT	1 cut(s)	211
SfaNI	GCATC	1 cut(s)	58
SfcI	CTRYAG	1 cut(s)	307
SinI	GGWCC	1 cut(s)	55
SmiMI	CAYNNNNRTG	1 cut(s)	18
Sse9I	AATT	2 cut(s)	104, 493
SspMI	CTAG	1 cut(s)	443
StyD4I	CCNGG	2 cut(s)	51, 211
StyI	CCWWGG	1 cut(s)	442
TaaI	ACNGT	3 cut(s)	311, 325, 364
TaqI	TCGA	1 cut(s)	246
TasI	AATT	2 cut(s)	104, 493
TatI	WGTACW	1 cut(s)	359
TfiI	GAWTC	1 cut(s)	374
Tru1I	TTAA	1 cut(s)	496
Tru9I	TTAA	1 cut(s)	496
TscAI	CASTG	4 cut(s)	44, 163, 390, 468
TseFI	GTSAC	1 cut(s)	459
TseI	GCWGC	1 cut(s)	144
Tsp45I	GTSAC	1 cut(s)	459
TspDTI	ATGAA	2 cut(s)	124, 368
TspGWI	ACGGA	1 cut(s)	180
TspRI	CASTG	4 cut(s)	44, 163, 390, 468
VneI	GTGCAC	1 cut(s)	154
VpaK11BI	GGWCC	1 cut(s)	55
XceI	RCATGY	2 cut(s)	263, 332
XmaJI	CCTAGG	1 cut(s)	442
XmiI	GTMKAC	1 cut(s)	123
XspI	CTAG	1 cut(s)	443
ZrmI	AGTACT	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.