Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0003913

Physical Location & Seq

Genomic Coordinates Reverse (-)

43348935 .. 43349492

Gene Structure 558 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1300200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGTCGTACCCAACGTCCCAAAATACAAGCCCTCTAAGCGAAAGTCAAGGTATGATCGACACCTACCATGTCCACGATCTTTTGCCGAACCAGTGCGGCTCGGTACTCGTCCAAACCATCGACGCACCGCTAACCCTAGTATGGTCCGTCCTCCGCCAGTTCGACAATCCGCAGGCTTACAAGCCGTTCGTTAATAGTTGCAGCATACGGGCGGGGAACGGAGGCATAGGGAGCATTCGGGAAGTCGTGATTAAGTCTGGGTTGCCGGCGAAAACCAGCACGGAGAGGCTGGACGAGCTCGACGACAACATGCACGTCATGCATTATAGCGTTATCGGTGGGGATCACAGGCTTGCAAATTACAGTTCTACCACTACGGTGCATAATGTGGAAGAAGAAAATGGAAGGAAGAATAAGACGGTTGTGATTCAGTCGTACGTGGTGGATATTCCCGCCGGAAGTAGCAAGGAGGATACTTGTTTGTTTGCTAATACGATTATAGGCTGTAATCTCAAGTCATTAGCTAAAGTTTCAGAAAAGATGGCTGCTACGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007154 GO:0007165 GO:0008150 GO:0008289 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009892 GO:0009987 GO:0010033 GO:0010427 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019840 GO:0019888 GO:0023052 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031406 GO:0032268 GO:0032269 GO:0032515 GO:0032870 GO:0033293 GO:0033993 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0036094 GO:0038023 GO:0042221 GO:0042562 GO:0042802 GO:0042803 GO:0043086 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0044092 GO:0044424 GO:0044464 GO:0045936 GO:0046983 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0098772 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Polyketide_cyc2

Protein Analysis

186

Amino Acids

20.13

Weight (kDa)

5.82

Isoelectric Point (pI)

49.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Polyketide_cyc2	PF10604	38 - 179	2.2e-16	Polyketide cyclase / dehydrase and lipid transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45860 AT5G45870
fragaria_vesca	FvH4_3g07710 FvH4_3g07720 FvH4_3g07731
malus_domestica	MD05G1300200.v1.1
prunus_persica	Prupe.4G062100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0010891 RchiOBHm_Chr5g0010921
rosa_laevigata	RLG00000031795 RLG00000031796 RLG00000031797
rosa_multiflora	Rmu_co8447663.1_g000001 Rmu_sc0000109.1_g000001 Rmu_sc0001895.1_g000005 Rmu_sc0001895.1_g000006
rosa_roxburghii	Rroxscaffold_1G00065450 Rroxscaffold_1G00065460 Rroxscaffold_1G00065470
rosa_rugosa	Rorug04G0453600 Rorug04G0453700 Rorug04G0453800
rosa_samantha	Rh5AG086300 Rh5BG080600 Rh5BG080700 Rh5BG080800 Rh5CG093000 Rh5CG093300 Rh5DG080800 Rh5DG080900
rosa_wichuraiana	Rw0G017440 Rw0G017450 Rw0G017890 Rw0G017900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	96, 128, 154, 170, 212, 453
AclWI	GGATC	1 cut(s)	351
AfaI	GTAC	3 cut(s)	8, 105, 437
AfiI	CCNNNNNNNGG	1 cut(s)	141
AjiI	CACGTC	1 cut(s)	316
AleI	CACNNNNGTG	1 cut(s)	377
AluBI	AGCT	2 cut(s)	298, 524
AluI	AGCT	2 cut(s)	298, 524
Alw21I	GWGCWC	1 cut(s)	300
AlwI	GGATC	1 cut(s)	351
ApeKI	GCWGC	2 cut(s)	201, 545
AspS9I	GGNCC	1 cut(s)	144
AvaII	GGWCC	1 cut(s)	144
BanII	GRGCYC	1 cut(s)	300
Bbv12I	GWGCWC	1 cut(s)	300
BbvI	GCAGC	2 cut(s)	213, 532
BccI	CCATC	2 cut(s)	125, 535
BceAI	ACGGC	1 cut(s)	169
BciVI	GTATCC	1 cut(s)	466
BfaI	CTAG	1 cut(s)	137
BfuI	GTATCC	1 cut(s)	466
BisI	GCNGC	3 cut(s)	97, 202, 546
BlsI	GCNGC	3 cut(s)	98, 203, 547
Bme18I	GGWCC	1 cut(s)	144
BmgBI	CACGTC	1 cut(s)	316
BmgT120I	GGNCC	1 cut(s)	144
BpuEI	CTTGAG	1 cut(s)	497
BsaAI	YACGTR	2 cut(s)	439, 552
Bsc4I	CCNNNNNNNGG	1 cut(s)	141
Bse118I	RCCGGY	1 cut(s)	265
Bse1I	ACTGG	2 cut(s)	91, 157
BseLI	CCNNNNNNNGG	1 cut(s)	141
BseNI	ACTGG	2 cut(s)	91, 157
BseXI	GCAGC	2 cut(s)	213, 532
BsiHKAI	GWGCWC	1 cut(s)	300
BsiSI	CCGG	2 cut(s)	266, 456
BsiWI	CGTACG	1 cut(s)	435
BslI	CCNNNNNNNGG	1 cut(s)	141
BsmI	GAATGC	1 cut(s)	234
Bsp1286I	GDGCHC	1 cut(s)	300
Bsp143I	GATC	3 cut(s)	54, 76, 343
BspACI	CCGC	6 cut(s)	96, 128, 154, 170, 212, 453
BspPI	GGATC	1 cut(s)	351
BsrFI	RCCGGY	1 cut(s)	265
BsrI	ACTGG	2 cut(s)	91, 157
BssAI	RCCGGY	1 cut(s)	265
BssMI	GATC	3 cut(s)	54, 76, 343
Bst4CI	ACNGT	3 cut(s)	365, 379, 421
BstAPI	GCANNNNNTGC	1 cut(s)	319
BstBAI	YACGTR	2 cut(s)	439, 552
BstC8I	GCNNGC	3 cut(s)	174, 267, 354
BstDEI	CTNAG	1 cut(s)	35
BstKTI	GATC	3 cut(s)	57, 79, 346
BstMBI	GATC	3 cut(s)	54, 76, 343
BstMWI	GCNNNNNNNGC	4 cut(s)	36, 231, 295, 319
BstNSI	RCATGY	1 cut(s)	313
BstV1I	GCAGC	2 cut(s)	213, 532
BsuI	GTATCC	1 cut(s)	466
BtrI	CACGTC	1 cut(s)	316
BtsIMutI	CAGTG	1 cut(s)	98
Cac8I	GCNNGC	3 cut(s)	174, 267, 354
Cfr10I	RCCGGY	1 cut(s)	265
Cfr13I	GGNCC	1 cut(s)	144
CseI	GACGC	1 cut(s)	131
Csp6I	GTAC	3 cut(s)	7, 104, 436
CviAII	CATG	3 cut(s)	68, 310, 319
CviQI	GTAC	3 cut(s)	7, 104, 436
DdeI	CTNAG	1 cut(s)	35
DpnI	GATC	3 cut(s)	56, 78, 345
DpnII	GATC	3 cut(s)	54, 76, 343
EciI	GGCGGA	1 cut(s)	143
Ecl136II	GAGCTC	1 cut(s)	298
Eco24I	GRGCYC	1 cut(s)	300
Eco47I	GGWCC	1 cut(s)	144
Eco53kI	GAGCTC	1 cut(s)	298
EcoICRI	GAGCTC	1 cut(s)	298
EcoT22I	ATGCAT	1 cut(s)	324
EcoT38I	GRGCYC	1 cut(s)	300
FaeI	CATG	3 cut(s)	71, 313, 322
FatI	CATG	3 cut(s)	67, 309, 318
FauI	CCCGC	2 cut(s)	205, 460
Fnu4HI	GCNGC	3 cut(s)	97, 202, 546
FriOI	GRGCYC	1 cut(s)	300
Fsp4HI	GCNGC	3 cut(s)	97, 202, 546
FspBI	CTAG	1 cut(s)	137
GluI	GCNGC	3 cut(s)	97, 202, 546
HapII	CCGG	2 cut(s)	266, 456
HgaI	GACGC	1 cut(s)	131
Hin1II	CATG	3 cut(s)	71, 313, 322
HinfI	GANTC	1 cut(s)	427
HpaII	CCGG	2 cut(s)	266, 456
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	1 cut(s)	535
Hpy188III	TCNNGA	2 cut(s)	239, 247
Hpy8I	GTNNAC	1 cut(s)	73
Hpy99I	CGWCG	2 cut(s)	125, 305
HpyAV	CCTTC	1 cut(s)	399
HpyCH4III	ACNGT	3 cut(s)	365, 379, 421
HpyCH4IV	ACGT	4 cut(s)	14, 315, 438, 551
HpyCH4V	TGCA	5 cut(s)	201, 313, 322, 356, 382
HpyF10VI	GCNNNNNNNGC	4 cut(s)	36, 231, 295, 319
HpyF3I	CTNAG	1 cut(s)	35
HpySE526I	ACGT	4 cut(s)	14, 315, 438, 551
Hsp92II	CATG	3 cut(s)	71, 313, 322
KroI	GCCGGC	1 cut(s)	265
KroNI	GCCGGC	1 cut(s)	267
Kzo9I	GATC	3 cut(s)	54, 76, 343
LmnI	GCTCC	1 cut(s)	231
LpnPI	CCDG	9 cut(s)	104, 158, 170, 243, 275, 279, 289, 334, 469
Lsp1109I	GCAGC	2 cut(s)	213, 532
MaeI	CTAG	1 cut(s)	137
MaeII	ACGT	4 cut(s)	14, 315, 438, 551
MalI	GATC	3 cut(s)	56, 78, 345
MboI	GATC	3 cut(s)	54, 76, 343
MboII	GAAGA	3 cut(s)	404, 407, 421
MhlI	GDGCHC	1 cut(s)	300
MluCI	AATT	1 cut(s)	358
MnlI	CCTC	5 cut(s)	42, 161, 215, 279, 463
Mph1103I	ATGCAT	1 cut(s)	324
MroNI	GCCGGC	1 cut(s)	265
MseI	TTAA	2 cut(s)	192, 252
MslI	CAYNNNNRTG	1 cut(s)	377
MspI	CCGG	2 cut(s)	266, 456
Mva1269I	GAATGC	1 cut(s)	234
MwoI	GCNNNNNNNGC	4 cut(s)	36, 231, 295, 319
NaeI	GCCGGC	1 cut(s)	267
NdeII	GATC	3 cut(s)	54, 76, 343
NgoMIV	GCCGGC	1 cut(s)	265
NlaIII	CATG	3 cut(s)	71, 313, 322
NsiI	ATGCAT	1 cut(s)	324
NspI	RCATGY	1 cut(s)	313
OliI	CACNNNNGTG	1 cut(s)	377
PcsI	WCGNNNNNNNCGW	2 cut(s)	11, 300
PctI	GAATGC	1 cut(s)	234
PdiI	GCCGGC	1 cut(s)	267
PfeI	GAWTC	1 cut(s)	427
Pfl23II	CGTACG	1 cut(s)	435
PkrI	GCNGC	3 cut(s)	98, 203, 547
Ppu21I	YACGTR	2 cut(s)	439, 552
Psp124BI	GAGCTC	1 cut(s)	300
PspLI	CGTACG	1 cut(s)	435
PspPI	GGNCC	1 cut(s)	144
RsaI	GTAC	3 cut(s)	8, 105, 437
RsaNI	GTAC	3 cut(s)	7, 104, 436
RseI	CAYNNNNRTG	1 cut(s)	377
SacI	GAGCTC	1 cut(s)	300
SaqAI	TTAA	2 cut(s)	192, 252
SatI	GCNGC	3 cut(s)	97, 202, 546
Sau3AI	GATC	3 cut(s)	54, 76, 343
Sau96I	GGNCC	1 cut(s)	144
SduI	GDGCHC	1 cut(s)	300
SetI	ASST	8 cut(s)	17, 52, 65, 300, 318, 441, 526, 554
SinI	GGWCC	1 cut(s)	144
SmiMI	CAYNNNNRTG	1 cut(s)	377
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
Sse9I	AATT	1 cut(s)	358
SsiI	CCGC	6 cut(s)	96, 128, 154, 170, 212, 453
SspMI	CTAG	1 cut(s)	137
SstI	GAGCTC	1 cut(s)	300
TaaI	ACNGT	3 cut(s)	365, 379, 421
TaiI	ACGT	4 cut(s)	17, 318, 441, 554
TaqI	TCGA	4 cut(s)	57, 120, 162, 300
TasI	AATT	1 cut(s)	358
TauI	GCSGC	1 cut(s)	99
TfiI	GAWTC	1 cut(s)	427
Tru1I	TTAA	2 cut(s)	192, 252
Tru9I	TTAA	2 cut(s)	192, 252
TscAI	CASTG	1 cut(s)	98
TseI	GCWGC	2 cut(s)	201, 545
TspGWI	ACGGA	3 cut(s)	136, 234, 296
TspRI	CASTG	1 cut(s)	98
VpaK11BI	GGWCC	1 cut(s)	144
XceI	RCATGY	1 cut(s)	313
XspI	CTAG	1 cut(s)	137
Zsp2I	ATGCAT	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.