Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003913

Physical Location & Seq

Genomic Coordinates Forward (+)

6880857 .. 6881597

Gene Structure 741 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG080600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGAGAGCTATCATAGCCATGCCCTCTCACCAAACCAGTGTGGCTCAAGCGTGGTCCAGACCATAGATGCACCACTTCCTCTCGTTTGGTCACGCCAGTTTGATAAGCCTCAAGCCTACAAGCAGTTCATAAGGAGCTGCAAAATGCGCGCTGGGGATGGAGGCGTAGGAAGCATACGTGAAGTGATGGTCAGCACTGGCTTACCTGCCAAAACCAGCATGGAGAGGCTCGACAAGCTTGACGATGACAAGCATGTCCTTGATTTCAGCATTGTTGGCGGAGAACACAAGCTGGTGAATTACAGTTCTACTACGACGGTGCAAGAGAAAGGTAGAAAGACTGTTGTGACTCAGTCTTATGTGGTGGATGTCCCTGCTGGGAGTAGTAAAGAGGATACTTGCTTGTTTGCTAATACTATCATAGAGTGCAACCTCAGGTCACTGGCTAAAGTTACAGAAAGGATGGCTGCTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007154 GO:0007165 GO:0008150 GO:0008289 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009892 GO:0009987 GO:0010033 GO:0010427 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019840 GO:0019888 GO:0023052 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031406 GO:0032268 GO:0032269 GO:0032515 GO:0032870 GO:0033293 GO:0033993 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0036094 GO:0038023 GO:0042221 GO:0042562 GO:0042802 GO:0042803 GO:0043086 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0044092 GO:0044424 GO:0044464 GO:0045936 GO:0046983 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0098772 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Polyketide_cyc2

Protein Analysis

158

Amino Acids

17.34

Weight (kDa)

7.68

Isoelectric Point (pI)

45.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Polyketide_cyc2	PF10604	17 - 153	2.5e-12	Polyketide cyclase / dehydrase and lipid transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45860 AT5G45870
fragaria_vesca	FvH4_3g07710 FvH4_3g07720 FvH4_3g07731
malus_domestica	MD05G1300200.v1.1
prunus_persica	Prupe.4G062100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0010891 RchiOBHm_Chr5g0010921
rosa_laevigata	RLG00000031795 RLG00000031796 RLG00000031797
rosa_multiflora	Rmu_co8447663.1_g000001 Rmu_sc0000109.1_g000001 Rmu_sc0001895.1_g000005 Rmu_sc0001895.1_g000006
rosa_roxburghii	Rroxscaffold_1G00065450 Rroxscaffold_1G00065460 Rroxscaffold_1G00065470
rosa_rugosa	Rorug04G0453600 Rorug04G0453700 Rorug04G0453800
rosa_samantha	Rh5AG086300 Rh5BG080600 Rh5BG080700 Rh5BG080800 Rh5CG093000 Rh5CG093300 Rh5DG080800 Rh5DG080900
rosa_wichuraiana	Rw0G017440 Rw0G017450 Rw0G017890 Rw0G017900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	254
Acc36I	ACCTGC	1 cut(s)	214
AccII	CGCG	1 cut(s)	150
AciI	CCGC	1 cut(s)	279
AluBI	AGCT	4 cut(s)	9, 138, 238, 292
AluI	AGCT	4 cut(s)	9, 138, 238, 292
ApeKI	GCWGC	2 cut(s)	138, 467
AspLEI	GCGC	2 cut(s)	150, 152
AspS9I	GGNCC	1 cut(s)	55
AsuHPI	GGTGA	2 cut(s)	21, 307
AvaII	GGWCC	1 cut(s)	55
AxyI	CCTNAGG	1 cut(s)	434
BbvI	GCAGC	2 cut(s)	125, 454
BccI	CCATC	3 cut(s)	152, 181, 457
BciVI	GTATCC	1 cut(s)	388
BfuAI	ACCTGC	1 cut(s)	214
BfuI	GTATCC	1 cut(s)	388
BisI	GCNGC	2 cut(s)	139, 468
BlsI	GCNGC	2 cut(s)	140, 469
Bme18I	GGWCC	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	55
BmsI	GCATC	1 cut(s)	58
BpuEI	CTTGAG	2 cut(s)	31, 96
BsaAI	YACGTR	1 cut(s)	179
Bse1I	ACTGG	4 cut(s)	37, 97, 202, 447
Bse21I	CCTNAGG	1 cut(s)	434
BseGI	GGATG	3 cut(s)	163, 373, 468
BseMII	CTCAG	2 cut(s)	365, 448
BseNI	ACTGG	4 cut(s)	37, 97, 202, 447
BsePI	GCGCGC	1 cut(s)	148
BseXI	GCAGC	2 cut(s)	125, 454
BseYI	CCCAGC	2 cut(s)	152, 377
Bsh1236I	CGCG	1 cut(s)	150
BslFI	GGGAC	1 cut(s)	356
BsmFI	GGGAC	1 cut(s)	356
BspACI	CCGC	1 cut(s)	279
BspCNI	CTCAG	2 cut(s)	364, 447
BspFNI	CGCG	1 cut(s)	150
BspMI	ACCTGC	1 cut(s)	214
BsrI	ACTGG	4 cut(s)	37, 97, 202, 447
BssHII	GCGCGC	1 cut(s)	148
Bst4CI	ACNGT	3 cut(s)	305, 319, 343
BstBAI	YACGTR	1 cut(s)	179
BstC8I	GCNNGC	1 cut(s)	150
BstDEI	CTNAG	2 cut(s)	351, 434
BstF5I	GGATG	3 cut(s)	163, 373, 468
BstFNI	CGCG	1 cut(s)	150
BstHHI	GCGC	2 cut(s)	150, 152
BstMWI	GCNNNNNNNGC	5 cut(s)	15, 147, 171, 235, 276
BstNSI	RCATGY	1 cut(s)	257
BstUI	CGCG	1 cut(s)	150
BstV1I	GCAGC	2 cut(s)	125, 454
Bsu36I	CCTNAGG	1 cut(s)	434
BsuI	GTATCC	1 cut(s)	388
BtsCI	GGATG	3 cut(s)	163, 373, 468
BtsIMutI	CAGTG	3 cut(s)	44, 195, 440
BveI	ACCTGC	1 cut(s)	214
Cac8I	GCNNGC	1 cut(s)	150
CfoI	GCGC	2 cut(s)	150, 152
Cfr13I	GGNCC	1 cut(s)	55
CviAII	CATG	3 cut(s)	20, 220, 254
DdeI	CTNAG	2 cut(s)	351, 434
DrdI	GACNNNNNNGTC	1 cut(s)	254
DseDI	GACNNNNNNGTC	1 cut(s)	254
EciI	GGCGGA	1 cut(s)	294
Eco47I	GGWCC	1 cut(s)	55
Eco81I	CCTNAGG	1 cut(s)	434
FaeI	CATG	3 cut(s)	23, 223, 257
FaiI	YATR	9 cut(s)	15, 21, 65, 131, 176, 221, 255, 360, 422
FaqI	GGGAC	1 cut(s)	356
FatI	CATG	3 cut(s)	19, 219, 253
Fnu4HI	GCNGC	2 cut(s)	139, 468
FokI	GGATG	2 cut(s)	170, 380
Fsp4HI	GCNGC	2 cut(s)	139, 468
GlaI	GCGC	2 cut(s)	149, 151
GluI	GCNGC	2 cut(s)	139, 468
GsaI	CCCAGC	2 cut(s)	156, 381
HhaI	GCGC	2 cut(s)	150, 152
Hin1II	CATG	3 cut(s)	23, 223, 257
Hin6I	GCGC	2 cut(s)	148, 150
HinP1I	GCGC	2 cut(s)	148, 150
HindIII	AAGCTT	1 cut(s)	236
HinfI	GANTC	1 cut(s)	349
HphI	GGTGA	2 cut(s)	21, 307
Hpy188III	TCNNGA	1 cut(s)	58
Hpy99I	CGWCG	1 cut(s)	319
HpyCH4III	ACNGT	3 cut(s)	305, 319, 343
HpyCH4IV	ACGT	1 cut(s)	178
HpyCH4V	TGCA	4 cut(s)	71, 141, 322, 429
HpyF10VI	GCNNNNNNNGC	5 cut(s)	15, 147, 171, 235, 276
HpyF3I	CTNAG	2 cut(s)	351, 434
HpySE526I	ACGT	1 cut(s)	178
Hsp92II	CATG	3 cut(s)	23, 223, 257
HspAI	GCGC	2 cut(s)	148, 150
LmnI	GCTCC	1 cut(s)	135
Lsp1109I	GCAGC	2 cut(s)	125, 454
LweI	GCATC	1 cut(s)	58
MaeII	ACGT	1 cut(s)	178
MaeIII	GTNAC	4 cut(s)	90, 346, 438, 451
MluCI	AATT	2 cut(s)	298, 472
MlyI	GAGTC	1 cut(s)	343
MnlI	CCTC	7 cut(s)	35, 90, 120, 155, 219, 385, 443
MslI	CAYNNNNRTG	1 cut(s)	18
MvnI	CGCG	1 cut(s)	150
MwoI	GCNNNNNNNGC	5 cut(s)	15, 147, 171, 235, 276
NlaIII	CATG	3 cut(s)	23, 223, 257
NmuCI	GTSAC	3 cut(s)	90, 346, 438
NspI	RCATGY	1 cut(s)	257
PauI	GCGCGC	1 cut(s)	148
PflFI	GACNNNGTC	1 cut(s)	352
PkrI	GCNGC	2 cut(s)	140, 469
PleI	GAGTC	1 cut(s)	343
PpsI	GAGTC	1 cut(s)	343
Ppu21I	YACGTR	1 cut(s)	179
PspFI	CCCAGC	2 cut(s)	152, 377
PspPI	GGNCC	1 cut(s)	55
PsyI	GACNNNGTC	1 cut(s)	352
PteI	GCGCGC	1 cut(s)	148
RseI	CAYNNNNRTG	1 cut(s)	18
SatI	GCNGC	2 cut(s)	139, 468
Sau96I	GGNCC	1 cut(s)	55
SchI	GAGTC	1 cut(s)	343
SetI	ASST	9 cut(s)	11, 140, 181, 208, 240, 294, 334, 435, 440
SfaNI	GCATC	1 cut(s)	58
SinI	GGWCC	1 cut(s)	55
SmiMI	CAYNNNNRTG	1 cut(s)	18
SmlI	CTYRAG	2 cut(s)	46, 111
SmoI	CTYRAG	2 cut(s)	46, 111
Sse9I	AATT	2 cut(s)	298, 472
SsiI	CCGC	1 cut(s)	279
TaaI	ACNGT	3 cut(s)	305, 319, 343
TaiI	ACGT	1 cut(s)	181
TaqI	TCGA	1 cut(s)	231
TasI	AATT	2 cut(s)	298, 472
TscAI	CASTG	3 cut(s)	44, 202, 447
TseFI	GTSAC	3 cut(s)	90, 346, 438
TseI	GCWGC	2 cut(s)	138, 467
Tsp45I	GTSAC	3 cut(s)	90, 346, 438
TspDTI	ATGAA	1 cut(s)	118
TspRI	CASTG	3 cut(s)	44, 202, 447
Tth111I	GACNNNGTC	1 cut(s)	352
VpaK11BI	GGWCC	1 cut(s)	55
XceI	RCATGY	1 cut(s)	257
XcmI	CCANNNNNNNNNTGG	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.