Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003913

Physical Location & Seq

Genomic Coordinates Forward (+)

6884101 .. 6884595

Gene Structure 495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG080700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGACAGTTACCATATCCATGCCCTCTTGCCAAATCAGTGTGGCTCAAGCCTGGTCCAGATCATAGATGCACCACTTCCTCTGGTTTGGTCAATCCTTCGCCAATTTGATAACCCTAAGGCCTACAAGTGCTTCGTAAAGAGCTGCATAATGCGCACTGGGGACGGAGGCATAGGAAGCATTCGTGAAGTGATACTTCGCTCTGGTTTACCTGGTAAAACCAGCATGGAGAGGCTTGACAAGCTTGATGATGAGAAGCATATCATAAATATTAGCATTGTTGGTGGCGAACACAAGCTTGTCAACTACAGTTCTACTACGACGGTGCATGTAGAGGAAGAAGAGAAAGGTATGAAGACTGTTGTGATTGAATCTTACGTGGTGGATATTCCTGCTGGGAATAGTAAAGAGGATGCTTGCTTGTTTGCTAATACTATCATAGGCTGCAACCTTAGGTCACTGGCTAAACTTGCAGAAAGGATGGCTGGTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007154 GO:0007165 GO:0008150 GO:0008289 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009892 GO:0009987 GO:0010033 GO:0010427 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019840 GO:0019888 GO:0023052 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031406 GO:0032268 GO:0032269 GO:0032515 GO:0032870 GO:0033293 GO:0033993 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0036094 GO:0038023 GO:0042221 GO:0042562 GO:0042802 GO:0042803 GO:0043086 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0044092 GO:0044424 GO:0044464 GO:0045936 GO:0046983 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0098772 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Polyketide_cyc2

Protein Analysis

164

Amino Acids

18.0

Weight (kDa)

6.2

Isoelectric Point (pI)

51.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Polyketide_cyc2	PF10604	20 - 159	7.8e-13	Polyketide cyclase / dehydrase and lipid transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45860 AT5G45870
fragaria_vesca	FvH4_3g07710 FvH4_3g07720 FvH4_3g07731
malus_domestica	MD05G1300200.v1.1
prunus_persica	Prupe.4G062100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0010891 RchiOBHm_Chr5g0010921
rosa_laevigata	RLG00000031795 RLG00000031796 RLG00000031797
rosa_multiflora	Rmu_co8447663.1_g000001 Rmu_sc0000109.1_g000001 Rmu_sc0001895.1_g000005 Rmu_sc0001895.1_g000006
rosa_roxburghii	Rroxscaffold_1G00065450 Rroxscaffold_1G00065460 Rroxscaffold_1G00065470
rosa_rugosa	Rorug04G0453600 Rorug04G0453700 Rorug04G0453800
rosa_samantha	Rh5AG086300 Rh5BG080600 Rh5BG080700 Rh5BG080800 Rh5CG093000 Rh5CG093300 Rh5DG080800 Rh5DG080900
rosa_wichuraiana	Rw0G017440 Rw0G017450 Rw0G017890 Rw0G017900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	155
AgsI	TTSAA	1 cut(s)	371
AjnI	CCWGG	2 cut(s)	51, 211
AluBI	AGCT	3 cut(s)	144, 244, 298
AluI	AGCT	3 cut(s)	144, 244, 298
AoxI	GGCC	1 cut(s)	120
ApeKI	GCWGC	2 cut(s)	144, 444
AspLEI	GCGC	1 cut(s)	156
AspS9I	GGNCC	1 cut(s)	55
AvaII	GGWCC	1 cut(s)	55
AxyI	CCTNAGG	2 cut(s)	117, 452
BbsI	GAAGAC	1 cut(s)	362
BbvI	GCAGC	2 cut(s)	131, 431
BccI	CCATC	1 cut(s)	475
BciT130I	CCWGG	2 cut(s)	53, 213
BfmI	CTRYAG	1 cut(s)	307
BisI	GCNGC	2 cut(s)	145, 445
BlsI	GCNGC	2 cut(s)	146, 446
Bme1390I	CCNGG	2 cut(s)	53, 213
Bme18I	GGWCC	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	55
BmrFI	CCNGG	2 cut(s)	53, 213
BmrI	ACTGGG	1 cut(s)	168
BmsI	GCATC	2 cut(s)	58, 403
BmuI	ACTGGG	1 cut(s)	168
BpiI	GAAGAC	1 cut(s)	362
BpuEI	CTTGAG	1 cut(s)	31
BsaAI	YACGTR	1 cut(s)	379
Bse1I	ACTGG	2 cut(s)	163, 465
Bse21I	CCTNAGG	2 cut(s)	117, 452
BseBI	CCWGG	2 cut(s)	53, 213
BseGI	GGATG	2 cut(s)	418, 486
BseNI	ACTGG	2 cut(s)	163, 465
BseXI	GCAGC	2 cut(s)	131, 431
BseYI	CCCAGC	1 cut(s)	395
BshFI	GGCC	1 cut(s)	122
BslFI	GGGAC	1 cut(s)	176
BsmFI	GGGAC	1 cut(s)	176
BsmI	GAATGC	1 cut(s)	180
BsnI	GGCC	1 cut(s)	122
Bsp143I	GATC	1 cut(s)	60
BspANI	GGCC	1 cut(s)	122
BsrI	ACTGG	2 cut(s)	163, 465
BssMI	GATC	1 cut(s)	60
Bst2UI	CCWGG	2 cut(s)	53, 213
Bst4CI	ACNGT	4 cut(s)	8, 311, 325, 361
Bst6I	CTCTTC	1 cut(s)	336
BstBAI	YACGTR	1 cut(s)	379
BstC8I	GCNNGC	1 cut(s)	418
BstDEI	CTNAG	2 cut(s)	117, 452
BstF5I	GGATG	2 cut(s)	418, 486
BstHHI	GCGC	1 cut(s)	156
BstKTI	GATC	1 cut(s)	63
BstMBI	GATC	1 cut(s)	60
BstMWI	GCNNNNNNNGC	4 cut(s)	153, 177, 241, 470
BstNI	CCWGG	2 cut(s)	53, 213
BstNSI	RCATGY	1 cut(s)	332
BstSCI	CCNGG	2 cut(s)	51, 211
BstSFI	CTRYAG	1 cut(s)	307
BstV1I	GCAGC	2 cut(s)	131, 431
BstV2I	GAAGAC	1 cut(s)	362
Bsu36I	CCTNAGG	2 cut(s)	117, 452
BsuRI	GGCC	1 cut(s)	122
BtsCI	GGATG	2 cut(s)	418, 486
BtsIMutI	CAGTG	3 cut(s)	44, 156, 458
Cac8I	GCNNGC	1 cut(s)	418
CfoI	GCGC	1 cut(s)	156
Cfr13I	GGNCC	1 cut(s)	55
CsiI	ACCWGGT	1 cut(s)	211
CviAII	CATG	3 cut(s)	20, 226, 329
DdeI	CTNAG	2 cut(s)	117, 452
DpnI	GATC	1 cut(s)	62
DpnII	GATC	1 cut(s)	60
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
Eco147I	AGGCCT	1 cut(s)	122
Eco47I	GGWCC	1 cut(s)	55
Eco81I	CCTNAGG	2 cut(s)	117, 452
EcoRII	CCWGG	2 cut(s)	51, 211
FaeI	CATG	3 cut(s)	23, 229, 332
FalI	AAGNNNNNCTT	2 cut(s)	180, 212
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	3 cut(s)	19, 225, 328
Fnu4HI	GCNGC	2 cut(s)	145, 445
FokI	GGATG	1 cut(s)	425
Fsp4HI	GCNGC	2 cut(s)	145, 445
FspAI	RTGCGCAY	1 cut(s)	155
FspI	TGCGCA	1 cut(s)	155
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	2 cut(s)	145, 445
GsaI	CCCAGC	1 cut(s)	399
HaeIII	GGCC	1 cut(s)	122
HhaI	GCGC	1 cut(s)	156
Hin1II	CATG	3 cut(s)	23, 229, 332
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HindIII	AAGCTT	2 cut(s)	242, 296
HinfI	GANTC	1 cut(s)	371
Hpy166II	GTNNAC	2 cut(s)	209, 304
Hpy188III	TCNNGA	2 cut(s)	58, 185
Hpy8I	GTNNAC	2 cut(s)	209, 304
Hpy99I	CGWCG	1 cut(s)	325
HpyAV	CCTTC	1 cut(s)	107
HpyCH4III	ACNGT	4 cut(s)	8, 311, 325, 361
HpyCH4IV	ACGT	1 cut(s)	378
HpyCH4V	TGCA	5 cut(s)	71, 147, 328, 447, 473
HpyF10VI	GCNNNNNNNGC	4 cut(s)	153, 177, 241, 470
HpyF3I	CTNAG	2 cut(s)	117, 452
HpySE526I	ACGT	1 cut(s)	378
Hsp92II	CATG	3 cut(s)	23, 229, 332
HspAI	GCGC	1 cut(s)	154
Kzo9I	GATC	1 cut(s)	60
Lsp1109I	GCAGC	2 cut(s)	131, 431
LweI	GCATC	2 cut(s)	58, 403
MabI	ACCWGGT	1 cut(s)	211
MaeII	ACGT	1 cut(s)	378
MaeIII	GTNAC	2 cut(s)	8, 456
MalI	GATC	1 cut(s)	62
MboI	GATC	1 cut(s)	60
MboII	GAAGA	3 cut(s)	350, 353, 367
MluCI	AATT	2 cut(s)	104, 490
MnlI	CCTC	6 cut(s)	35, 90, 161, 225, 328, 403
MslI	CAYNNNNRTG	1 cut(s)	18
MspR9I	CCNGG	2 cut(s)	53, 213
Mva1269I	GAATGC	1 cut(s)	180
MvaI	CCWGG	2 cut(s)	53, 213
MwoI	GCNNNNNNNGC	4 cut(s)	153, 177, 241, 470
NdeII	GATC	1 cut(s)	60
NlaIII	CATG	3 cut(s)	23, 229, 332
NmuCI	GTSAC	1 cut(s)	456
NsbI	TGCGCA	1 cut(s)	155
NspI	RCATGY	1 cut(s)	332
PceI	AGGCCT	1 cut(s)	122
PctI	GAATGC	1 cut(s)	180
PfeI	GAWTC	1 cut(s)	371
PkrI	GCNGC	2 cut(s)	146, 446
Ppu21I	YACGTR	1 cut(s)	379
Psp6I	CCWGG	2 cut(s)	51, 211
PspFI	CCCAGC	1 cut(s)	395
PspGI	CCWGG	2 cut(s)	51, 211
PspPI	GGNCC	1 cut(s)	55
RseI	CAYNNNNRTG	1 cut(s)	18
SatI	GCNGC	2 cut(s)	145, 445
Sau3AI	GATC	1 cut(s)	60
Sau96I	GGNCC	1 cut(s)	55
ScrFI	CCNGG	2 cut(s)	53, 213
SetI	ASST	8 cut(s)	146, 214, 246, 300, 352, 381, 453, 458
SexAI	ACCWGGT	1 cut(s)	211
SfaNI	GCATC	2 cut(s)	58, 403
SfcI	CTRYAG	1 cut(s)	307
SinI	GGWCC	1 cut(s)	55
SmiMI	CAYNNNNRTG	1 cut(s)	18
SmlI	CTYRAG	1 cut(s)	46
SmoI	CTYRAG	1 cut(s)	46
Sse9I	AATT	2 cut(s)	104, 490
SseBI	AGGCCT	1 cut(s)	122
SspI	AATATT	1 cut(s)	271
StuI	AGGCCT	1 cut(s)	122
StyD4I	CCNGG	2 cut(s)	51, 211
TaaI	ACNGT	4 cut(s)	8, 311, 325, 361
TaiI	ACGT	1 cut(s)	381
TasI	AATT	2 cut(s)	104, 490
TfiI	GAWTC	1 cut(s)	371
TscAI	CASTG	3 cut(s)	44, 163, 465
TseFI	GTSAC	1 cut(s)	456
TseI	GCWGC	2 cut(s)	144, 444
Tsp45I	GTSAC	1 cut(s)	456
TspDTI	ATGAA	1 cut(s)	368
TspGWI	ACGGA	1 cut(s)	180
TspRI	CASTG	3 cut(s)	44, 163, 465
VpaK11BI	GGWCC	1 cut(s)	55
XceI	RCATGY	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.