Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003913

Physical Location & Seq

Genomic Coordinates Forward (+)

4531406 .. 4532406

Gene Structure 1001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g07710.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGATAAGAAAGATGGTCACCACAACAAAACCCTCTTGCCAAACCAGTGTGGCTCAAGCCATAGCCAAATCATAGACGCACCACTCCCTCTAGTTTGGTCCATTATCCGCCAATTCGACAACCCTCAAGCCCACAAGCAGTTCATAAAGAGCTGCACCATACGTGCCGGCGACGGCGGCACCGCCGGAAGCATACGTGAGGTGATGGTCAGCTCCGGCTTGCCGGGGAGTAGCAGTATGGAGAGGCTTGACAAGCTTGACGACGACAAGCATGTCATGAACTTCAGCATTGTTGGTGGTGATCACAAGCTTGCAAACTATAGCTCCATCACTACACTGCATAAAGAGGACGAGGAAGAAGAAAAGGGTGGCTCGAGAAAGACGGTGGTGACTCAGTCGTATGTGGTGGATGTTCCGGACGGGAGTAGCAAGGAGGATACTTGTTTGTTTGCTGATACTATTGTGGGATGTAACCTGAGGTCGTTGGCTAAAGTCACAGAGAAGATGGCTGGTAAAAAATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007154 GO:0007165 GO:0008150 GO:0008289 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009892 GO:0009987 GO:0010033 GO:0010427 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019840 GO:0019888 GO:0023052 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031406 GO:0032268 GO:0032269 GO:0032515 GO:0032870 GO:0033293 GO:0033993 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0036094 GO:0038023 GO:0042221 GO:0042562 GO:0042802 GO:0042803 GO:0043086 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0044092 GO:0044424 GO:0044464 GO:0045936 GO:0046983 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0098772 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Polyketide_cyc2

Protein Analysis

175

Amino Acids

18.94

Weight (kDa)

6.37

Isoelectric Point (pI)

44.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Polyketide_cyc2	PF10604	20 - 166	5.9e-12	Polyketide cyclase / dehydrase and lipid transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45860 AT5G45870
fragaria_vesca	FvH4_3g07710 FvH4_3g07720 FvH4_3g07731
malus_domestica	MD05G1300200.v1.1
prunus_persica	Prupe.4G062100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0010891 RchiOBHm_Chr5g0010921
rosa_laevigata	RLG00000031795 RLG00000031796 RLG00000031797
rosa_multiflora	Rmu_co8447663.1_g000001 Rmu_sc0000109.1_g000001 Rmu_sc0001895.1_g000005 Rmu_sc0001895.1_g000006
rosa_roxburghii	Rroxscaffold_1G00065450 Rroxscaffold_1G00065460 Rroxscaffold_1G00065470
rosa_rugosa	Rorug04G0453600 Rorug04G0453700 Rorug04G0453800
rosa_samantha	Rh5AG086300 Rh5BG080600 Rh5BG080700 Rh5BG080800 Rh5CG093000 Rh5CG093300 Rh5DG080800 Rh5DG080900
rosa_wichuraiana	Rw0G017440 Rw0G017450 Rw0G017890 Rw0G017900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	523
AasI	GACNNNNNNGTC	1 cut(s)	272
AccB1I	GGYRCC	1 cut(s)	179
AccIII	TCCGGA	1 cut(s)	415
AciI	CCGC	3 cut(s)	109, 177, 183
AcuI	CTGAAG	1 cut(s)	268
AluBI	AGCT	5 cut(s)	153, 213, 256, 310, 324
AluI	AGCT	5 cut(s)	153, 213, 256, 310, 324
Ama87I	CYCGRG	1 cut(s)	373
Aor13HI	TCCGGA	1 cut(s)	415
ApeKI	GCWGC	1 cut(s)	153
AspS9I	GGNCC	1 cut(s)	99
AsuC2I	CCSGG	1 cut(s)	225
AsuHPI	GGTGA	4 cut(s)	11, 214, 311, 400
AvaI	CYCGRG	1 cut(s)	373
AvaII	GGWCC	1 cut(s)	99
AxyI	CCTNAGG	1 cut(s)	476
BaeI	ACNNNNGTAYC	2 cut(s)	447, 480
BanI	GGYRCC	1 cut(s)	179
BbvI	GCAGC	1 cut(s)	140
BccI	CCATC	4 cut(s)	8, 199, 335, 499
BceAI	ACGGC	1 cut(s)	190
BciVI	GTATCC	1 cut(s)	430
BclI	TGATCA	1 cut(s)	301
BcnI	CCSGG	1 cut(s)	225
BfaI	CTAG	1 cut(s)	92
BfmI	CTRYAG	1 cut(s)	319
BfuI	GTATCC	1 cut(s)	430
BisI	GCNGC	2 cut(s)	154, 178
BlsI	GCNGC	2 cut(s)	155, 179
Bme1390I	CCNGG	1 cut(s)	225
Bme18I	GGWCC	1 cut(s)	99
BmeT110I	CYCGRG	1 cut(s)	373
BmgT120I	GGNCC	1 cut(s)	99
BmiI	GGNNCC	1 cut(s)	181
BmrFI	CCNGG	1 cut(s)	225
BpuEI	CTTGAG	2 cut(s)	40, 111
BpuMI	CCSGG	1 cut(s)	225
BsaAI	YACGTR	2 cut(s)	164, 197
BsaJI	CCNNGG	1 cut(s)	224
BsaWI	WCCGGW	1 cut(s)	415
BsaXI	ACNNNNNCTCC	4 cut(s)	220, 250, 308, 338
Bse118I	RCCGGY	1 cut(s)	167
Bse1I	ACTGG	1 cut(s)	46
Bse21I	CCTNAGG	1 cut(s)	476
BseAI	TCCGGA	1 cut(s)	415
BseDI	CCNNGG	1 cut(s)	224
BseGI	GGATG	2 cut(s)	415, 473
BseMII	CTCAG	2 cut(s)	407, 467
BseNI	ACTGG	1 cut(s)	46
BseXI	GCAGC	1 cut(s)	140
BsgI	GTGCAG	1 cut(s)	139
BshNI	GGYRCC	1 cut(s)	179
BsiHKCI	CYCGRG	1 cut(s)	373
BsiSI	CCGG	5 cut(s)	168, 186, 216, 224, 416
BsoBI	CYCGRG	1 cut(s)	373
Bsp13I	TCCGGA	1 cut(s)	415
Bsp143I	GATC	1 cut(s)	301
BspACI	CCGC	3 cut(s)	109, 177, 183
BspCNI	CTCAG	2 cut(s)	406, 468
BspEI	TCCGGA	1 cut(s)	415
BspHI	TCATGA	1 cut(s)	276
BspLI	GGNNCC	1 cut(s)	181
BspT107I	GGYRCC	1 cut(s)	179
BsrFI	RCCGGY	1 cut(s)	167
BsrI	ACTGG	1 cut(s)	46
BssAI	RCCGGY	1 cut(s)	167
BssECI	CCNNGG	1 cut(s)	224
BssMI	GATC	1 cut(s)	301
Bst4CI	ACNGT	1 cut(s)	385
BstBAI	YACGTR	2 cut(s)	164, 197
BstC8I	GCNNGC	3 cut(s)	169, 221, 312
BstDEI	CTNAG	2 cut(s)	393, 476
BstEII	GGTNACC	1 cut(s)	17
BstF5I	GGATG	2 cut(s)	415, 473
BstKTI	GATC	1 cut(s)	304
BstMBI	GATC	1 cut(s)	301
BstMWI	GCNNNNNNNGC	2 cut(s)	177, 253
BstNSI	RCATGY	1 cut(s)	275
BstPI	GGTNACC	1 cut(s)	17
BstSCI	CCNGG	1 cut(s)	223
BstSFI	CTRYAG	1 cut(s)	319
BstV1I	GCAGC	1 cut(s)	140
Bsu36I	CCTNAGG	1 cut(s)	476
BsuI	GTATCC	1 cut(s)	430
BtsCI	GGATG	2 cut(s)	415, 473
BtsI	GCAGTG	1 cut(s)	335
BtsIMutI	CAGTG	2 cut(s)	53, 335
Cac8I	GCNNGC	3 cut(s)	169, 221, 312
CciI	TCATGA	1 cut(s)	276
Cfr10I	RCCGGY	1 cut(s)	167
Cfr13I	GGNCC	1 cut(s)	99
CseI	GACGC	1 cut(s)	86
CviAII	CATG	2 cut(s)	272, 277
DdeI	CTNAG	2 cut(s)	393, 476
DpnI	GATC	1 cut(s)	303
DpnII	GATC	1 cut(s)	301
DrdI	GACNNNNNNGTC	1 cut(s)	272
DseDI	GACNNNNNNGTC	1 cut(s)	272
EciI	GGCGGA	1 cut(s)	98
Eco47I	GGWCC	1 cut(s)	99
Eco57I	CTGAAG	1 cut(s)	268
Eco81I	CCTNAGG	1 cut(s)	476
Eco88I	CYCGRG	1 cut(s)	373
Eco91I	GGTNACC	1 cut(s)	17
EcoO65I	GGTNACC	1 cut(s)	17
FaeI	CATG	2 cut(s)	275, 280
FatI	CATG	2 cut(s)	271, 276
FbaI	TGATCA	1 cut(s)	301
Fnu4HI	GCNGC	2 cut(s)	154, 178
FokI	GGATG	2 cut(s)	422, 480
Fsp4HI	GCNGC	2 cut(s)	154, 178
FspBI	CTAG	1 cut(s)	92
GluI	GCNGC	2 cut(s)	154, 178
HapII	CCGG	5 cut(s)	168, 186, 216, 224, 416
HgaI	GACGC	1 cut(s)	86
Hin1II	CATG	2 cut(s)	275, 280
HindIII	AAGCTT	2 cut(s)	254, 308
HinfI	GANTC	1 cut(s)	391
HpaII	CCGG	5 cut(s)	168, 186, 216, 224, 416
HphI	GGTGA	4 cut(s)	11, 214, 311, 400
Hpy188III	TCNNGA	3 cut(s)	277, 375, 416
Hpy99I	CGWCG	2 cut(s)	176, 266
HpyCH4III	ACNGT	1 cut(s)	385
HpyCH4IV	ACGT	2 cut(s)	163, 196
HpyCH4V	TGCA	3 cut(s)	156, 314, 340
HpyF10VI	GCNNNNNNNGC	2 cut(s)	177, 253
HpyF3I	CTNAG	2 cut(s)	393, 476
HpySE526I	ACGT	2 cut(s)	163, 196
Hsp92II	CATG	2 cut(s)	275, 280
Kpn2I	TCCGGA	1 cut(s)	415
KroI	GCCGGC	1 cut(s)	167
KroNI	GCCGGC	1 cut(s)	169
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	1 cut(s)	301
LmnI	GCTCC	2 cut(s)	218, 329
LpnPI	CCDG	8 cut(s)	59, 181, 199, 229, 237, 429, 488, 495
Lsp1109I	GCAGC	1 cut(s)	140
MaeI	CTAG	1 cut(s)	92
MaeII	ACGT	2 cut(s)	163, 196
MaeIII	GTNAC	4 cut(s)	17, 388, 470, 493
MalI	GATC	1 cut(s)	303
MboI	GATC	1 cut(s)	301
MboII	GAAGA	3 cut(s)	368, 371, 514
MluCI	AATT	2 cut(s)	113, 518
MlyI	GAGTC	1 cut(s)	385
MnlI	CCTC	9 cut(s)	44, 99, 135, 193, 237, 340, 346, 427, 471
MroI	TCCGGA	1 cut(s)	415
MroNI	GCCGGC	1 cut(s)	167
MspI	CCGG	5 cut(s)	168, 186, 216, 224, 416
MspR9I	CCNGG	1 cut(s)	225
MwoI	GCNNNNNNNGC	2 cut(s)	177, 253
NaeI	GCCGGC	1 cut(s)	169
NciI	CCSGG	1 cut(s)	225
NdeII	GATC	1 cut(s)	301
NgoMIV	GCCGGC	1 cut(s)	167
NlaIII	CATG	2 cut(s)	275, 280
NlaIV	GGNNCC	1 cut(s)	181
NmuCI	GTSAC	3 cut(s)	17, 388, 493
NspI	RCATGY	1 cut(s)	275
PaeR7I	CTCGAG	1 cut(s)	373
PagI	TCATGA	1 cut(s)	276
PdiI	GCCGGC	1 cut(s)	169
PflFI	GACNNNGTC	1 cut(s)	394
PkrI	GCNGC	2 cut(s)	155, 179
PleI	GAGTC	1 cut(s)	385
PpsI	GAGTC	1 cut(s)	385
Ppu21I	YACGTR	2 cut(s)	164, 197
PsiI	TTATAA	1 cut(s)	523
PspEI	GGTNACC	1 cut(s)	17
PspN4I	GGNNCC	1 cut(s)	181
PspPI	GGNCC	1 cut(s)	99
PsyI	GACNNNGTC	1 cut(s)	394
SatI	GCNGC	2 cut(s)	154, 178
Sau3AI	GATC	1 cut(s)	301
Sau96I	GGNCC	1 cut(s)	99
SchI	GAGTC	1 cut(s)	385
ScrFI	CCNGG	1 cut(s)	225
SfcI	CTRYAG	1 cut(s)	319
Sfr274I	CTCGAG	1 cut(s)	373
SinI	GGWCC	1 cut(s)	99
SlaI	CTCGAG	1 cut(s)	373
SmlI	CTYRAG	3 cut(s)	55, 126, 373
SmoI	CTYRAG	3 cut(s)	55, 126, 373
Sse9I	AATT	2 cut(s)	113, 518
SsiI	CCGC	3 cut(s)	109, 177, 183
SspMI	CTAG	1 cut(s)	92
StyD4I	CCNGG	1 cut(s)	223
TaaI	ACNGT	1 cut(s)	385
TaiI	ACGT	2 cut(s)	166, 199
TaqI	TCGA	2 cut(s)	117, 374
TasI	AATT	2 cut(s)	113, 518
TauI	GCSGC	1 cut(s)	180
TscAI	CASTG	2 cut(s)	53, 342
TseFI	GTSAC	3 cut(s)	17, 388, 493
TseI	GCWGC	1 cut(s)	153
Tsp45I	GTSAC	3 cut(s)	17, 388, 493
TspDTI	ATGAA	2 cut(s)	133, 293
TspRI	CASTG	2 cut(s)	53, 342
Tth111I	GACNNNGTC	1 cut(s)	394
VpaK11BI	GGWCC	1 cut(s)	99
XceI	RCATGY	1 cut(s)	275
XhoI	CTCGAG	1 cut(s)	373
XspI	CTAG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.