Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003913

Physical Location & Seq

Genomic Coordinates Reverse (-)

4533325 .. 4534846

Gene Structure 1522 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g07720.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGACAGCTACCATAACCATGCCCTCTTGCCAAATCAGTGTGGTTCAACCCTGGTCCAGATCATAGATGCACCACTTCCTCTGGTTTGGTCAATCCTTCGCCAATTTGATAACCCTCAGGCCTACAAGCTCTTCATAAAGAGCTGCACAATGCGCACTGGGGATGGAGGCGTAGGAAGCATTCGTGAAGTAATGGTTAGCTCTGGTTTACCTGGTAAAACCAGCACGGAGAGGCTTGACAGGCTCGATGATGAGAAGCATGTCATGAATATTAGCATTCTTGGTGGTGAACACAGGCTTGTCAACTACAGGTCTACTACCACGGTGCATGAAGAGGAAGAAGAGAAAGGTATGAAGACTGTTGTGATTGAATCCTACGTGGTGGATATTCCTGGTGGGAGTAGTCAAGAGGATACTTGCTTGTTTGCTAATACTATCATAGGTTACAACCATAGGTCACTGGCTAAAGTTGCAGAAAGGATGGCTGATAGTAGTCGAGTGAGCTACCACTTCAGGGTTAGGGAGCAATTTGTAGGTATGACTCCTCCCCAAGGGATGTTTTTCACAAGTTGGGGTTCAAACCAAGGACCTCCCATTACCAGGAGAATCCTTGCAGCGTCCGCCCCACTTGCAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007154 GO:0007165 GO:0008150 GO:0008289 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009892 GO:0009987 GO:0010033 GO:0010427 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019840 GO:0019888 GO:0023052 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031406 GO:0032268 GO:0032269 GO:0032515 GO:0032870 GO:0033293 GO:0033993 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0036094 GO:0038023 GO:0042221 GO:0042562 GO:0042802 GO:0042803 GO:0043086 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0044092 GO:0044424 GO:0044464 GO:0045936 GO:0046983 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0098772 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Polyketide_cyc2

Protein Analysis

213

Amino Acids

23.49

Weight (kDa)

6.38

Isoelectric Point (pI)

48.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Polyketide_cyc2	PF10604	19 - 159	1.6e-12	Polyketide cyclase / dehydrase and lipid transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45860 AT5G45870
fragaria_vesca	FvH4_3g07710 FvH4_3g07720 FvH4_3g07731
malus_domestica	MD05G1300200.v1.1
prunus_persica	Prupe.4G062100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0010891 RchiOBHm_Chr5g0010921
rosa_laevigata	RLG00000031795 RLG00000031796 RLG00000031797
rosa_multiflora	Rmu_co8447663.1_g000001 Rmu_sc0000109.1_g000001 Rmu_sc0001895.1_g000005 Rmu_sc0001895.1_g000006
rosa_roxburghii	Rroxscaffold_1G00065450 Rroxscaffold_1G00065460 Rroxscaffold_1G00065470
rosa_rugosa	Rorug04G0453600 Rorug04G0453700 Rorug04G0453800
rosa_samantha	Rh5AG086300 Rh5BG080600 Rh5BG080700 Rh5BG080800 Rh5CG093000 Rh5CG093300 Rh5DG080800 Rh5DG080900
rosa_wichuraiana	Rw0G017440 Rw0G017450 Rw0G017890 Rw0G017900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	155
AccI	GTMKAC	1 cut(s)	314
AciI	CCGC	1 cut(s)	621
AcuI	CTGAAG	1 cut(s)	496
AfiI	CCNNNNNNNGG	3 cut(s)	514, 551, 600
AgsI	TTSAA	3 cut(s)	48, 371, 579
AjnI	CCWGG	4 cut(s)	51, 211, 391, 599
AluBI	AGCT	5 cut(s)	9, 130, 144, 201, 504
AluI	AGCT	5 cut(s)	9, 130, 144, 201, 504
AoxI	GGCC	1 cut(s)	120
ApeKI	GCWGC	3 cut(s)	144, 614, 632
AspLEI	GCGC	1 cut(s)	156
AspS9I	GGNCC	2 cut(s)	55, 587
AsuHPI	GGTGA	1 cut(s)	299
AvaII	GGWCC	2 cut(s)	55, 587
AxyI	CCTNAGG	1 cut(s)	117
BbsI	GAAGAC	1 cut(s)	362
BbvI	GCAGC	2 cut(s)	131, 626
BccI	CCATC	2 cut(s)	158, 475
BciT130I	CCWGG	4 cut(s)	53, 213, 393, 601
BciVI	GTATCC	1 cut(s)	406
BfaI	CTAG	1 cut(s)	637
BfmI	CTRYAG	1 cut(s)	307
BfuI	GTATCC	1 cut(s)	406
BisI	GCNGC	3 cut(s)	145, 615, 633
BlsI	GCNGC	3 cut(s)	146, 616, 634
Bme1390I	CCNGG	4 cut(s)	53, 213, 393, 601
Bme18I	GGWCC	2 cut(s)	55, 587
BmgT120I	GGNCC	2 cut(s)	55, 587
BmrFI	CCNGG	4 cut(s)	53, 213, 393, 601
BmrI	ACTGGG	1 cut(s)	168
BmsI	GCATC	1 cut(s)	58
BmuI	ACTGGG	1 cut(s)	168
BpiI	GAAGAC	1 cut(s)	362
BsaAI	YACGTR	1 cut(s)	379
BsaJI	CCNNGG	4 cut(s)	51, 321, 550, 583
Bsc4I	CCNNNNNNNGG	3 cut(s)	514, 551, 600
Bse1I	ACTGG	2 cut(s)	163, 465
Bse21I	CCTNAGG	1 cut(s)	117
BseBI	CCWGG	4 cut(s)	53, 213, 393, 601
BseDI	CCNNGG	4 cut(s)	51, 321, 550, 583
BseGI	GGATG	3 cut(s)	169, 486, 561
BseLI	CCNNNNNNNGG	3 cut(s)	514, 551, 600
BseMII	CTCAG	1 cut(s)	131
BseNI	ACTGG	2 cut(s)	163, 465
BseRI	GAGGAG	1 cut(s)	534
BseXI	GCAGC	2 cut(s)	131, 626
BsgI	GTGCAG	1 cut(s)	130
BshFI	GGCC	1 cut(s)	122
BslI	CCNNNNNNNGG	3 cut(s)	514, 551, 600
BsmI	GAATGC	2 cut(s)	180, 276
BsnI	GGCC	1 cut(s)	122
Bsp143I	GATC	1 cut(s)	60
BspACI	CCGC	1 cut(s)	621
BspANI	GGCC	1 cut(s)	122
BspCNI	CTCAG	1 cut(s)	130
BspHI	TCATGA	1 cut(s)	264
BspQI	GCTCTTC	1 cut(s)	137
BsrI	ACTGG	2 cut(s)	163, 465
BssECI	CCNNGG	4 cut(s)	51, 321, 550, 583
BssMI	GATC	1 cut(s)	60
BssT1I	CCWWGG	2 cut(s)	550, 583
Bst2UI	CCWGG	4 cut(s)	53, 213, 393, 601
Bst4CI	ACNGT	2 cut(s)	325, 361
Bst6I	CTCTTC	3 cut(s)	137, 327, 336
BstBAI	YACGTR	1 cut(s)	379
BstDEI	CTNAG	1 cut(s)	117
BstDSI	CCRYGG	1 cut(s)	321
BstENI	CCTNNNNNAGG	1 cut(s)	549
BstF5I	GGATG	3 cut(s)	169, 486, 561
BstHHI	GCGC	1 cut(s)	156
BstKTI	GATC	1 cut(s)	63
BstMBI	GATC	1 cut(s)	60
BstMWI	GCNNNNNNNGC	6 cut(s)	153, 177, 241, 470, 620, 629
BstNI	CCWGG	4 cut(s)	53, 213, 393, 601
BstNSI	RCATGY	1 cut(s)	263
BstSCI	CCNGG	4 cut(s)	51, 211, 391, 599
BstSFI	CTRYAG	1 cut(s)	307
BstV1I	GCAGC	2 cut(s)	131, 626
BstV2I	GAAGAC	1 cut(s)	362
Bsu36I	CCTNAGG	1 cut(s)	117
BsuI	GTATCC	1 cut(s)	406
BsuRI	GGCC	1 cut(s)	122
BtgI	CCRYGG	1 cut(s)	321
BtsCI	GGATG	3 cut(s)	169, 486, 561
BtsIMutI	CAGTG	3 cut(s)	44, 156, 458
CciI	TCATGA	1 cut(s)	264
CfoI	GCGC	1 cut(s)	156
Cfr13I	GGNCC	2 cut(s)	55, 587
CseI	GACGC	1 cut(s)	606
CsiI	ACCWGGT	1 cut(s)	211
CviAII	CATG	4 cut(s)	20, 260, 265, 329
DdeI	CTNAG	1 cut(s)	117
DpnI	GATC	1 cut(s)	62
DpnII	GATC	1 cut(s)	60
Eam1104I	CTCTTC	3 cut(s)	137, 327, 336
EarI	CTCTTC	3 cut(s)	137, 327, 336
EciI	GGCGGA	1 cut(s)	610
Eco130I	CCWWGG	2 cut(s)	550, 583
Eco147I	AGGCCT	1 cut(s)	122
Eco47I	GGWCC	2 cut(s)	55, 587
Eco57I	CTGAAG	1 cut(s)	496
Eco81I	CCTNAGG	1 cut(s)	117
EcoNI	CCTNNNNNAGG	1 cut(s)	549
EcoO109I	RGGNCCY	1 cut(s)	587
EcoRII	CCWGG	4 cut(s)	51, 211, 391, 599
EcoT14I	CCWWGG	2 cut(s)	550, 583
ErhI	CCWWGG	2 cut(s)	550, 583
FaeI	CATG	4 cut(s)	23, 263, 268, 332
FatI	CATG	4 cut(s)	19, 259, 264, 328
FblI	GTMKAC	1 cut(s)	314
Fnu4HI	GCNGC	3 cut(s)	145, 615, 633
FokI	GGATG	3 cut(s)	176, 493, 568
Fsp4HI	GCNGC	3 cut(s)	145, 615, 633
FspAI	RTGCGCAY	1 cut(s)	155
FspBI	CTAG	1 cut(s)	637
FspI	TGCGCA	1 cut(s)	155
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	3 cut(s)	145, 615, 633
HaeIII	GGCC	1 cut(s)	122
HgaI	GACGC	1 cut(s)	606
HhaI	GCGC	1 cut(s)	156
Hin1II	CATG	4 cut(s)	23, 263, 268, 332
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HinfI	GANTC	3 cut(s)	371, 541, 606
HphI	GGTGA	1 cut(s)	299
Hpy166II	GTNNAC	4 cut(s)	209, 290, 304, 315
Hpy188III	TCNNGA	4 cut(s)	58, 185, 265, 407
Hpy8I	GTNNAC	4 cut(s)	209, 290, 304, 315
HpyAV	CCTTC	1 cut(s)	107
HpyCH4III	ACNGT	2 cut(s)	325, 361
HpyCH4IV	ACGT	1 cut(s)	378
HpyCH4V	TGCA	6 cut(s)	71, 147, 328, 473, 614, 632
HpyF10VI	GCNNNNNNNGC	6 cut(s)	153, 177, 241, 470, 620, 629
HpyF3I	CTNAG	1 cut(s)	117
HpySE526I	ACGT	1 cut(s)	378
Hsp92II	CATG	4 cut(s)	23, 263, 268, 332
HspAI	GCGC	1 cut(s)	154
Kzo9I	GATC	1 cut(s)	60
LguI	GCTCTTC	1 cut(s)	137
LmnI	GCTCC	1 cut(s)	523
Lsp1109I	GCAGC	2 cut(s)	131, 626
LweI	GCATC	1 cut(s)	58
MabI	ACCWGGT	1 cut(s)	211
MaeI	CTAG	1 cut(s)	637
MaeII	ACGT	1 cut(s)	378
MaeIII	GTNAC	2 cut(s)	443, 456
MalI	GATC	1 cut(s)	62
MboI	GATC	1 cut(s)	60
MboII	GAAGA	5 cut(s)	124, 344, 350, 353, 367
MluCI	AATT	2 cut(s)	104, 527
MlyI	GAGTC	1 cut(s)	535
MnlI	CCTC	9 cut(s)	35, 90, 126, 161, 225, 328, 403, 555, 600
MslI	CAYNNNNRTG	1 cut(s)	18
MspR9I	CCNGG	4 cut(s)	53, 213, 393, 601
Mva1269I	GAATGC	2 cut(s)	180, 276
MvaI	CCWGG	4 cut(s)	53, 213, 393, 601
MwoI	GCNNNNNNNGC	6 cut(s)	153, 177, 241, 470, 620, 629
NdeII	GATC	1 cut(s)	60
NlaIII	CATG	4 cut(s)	23, 263, 268, 332
NmuCI	GTSAC	1 cut(s)	456
NsbI	TGCGCA	1 cut(s)	155
NspI	RCATGY	1 cut(s)	263
PagI	TCATGA	1 cut(s)	264
PceI	AGGCCT	1 cut(s)	122
PciSI	GCTCTTC	1 cut(s)	137
PctI	GAATGC	2 cut(s)	180, 276
PfeI	GAWTC	2 cut(s)	371, 606
PkrI	GCNGC	3 cut(s)	146, 616, 634
PleI	GAGTC	1 cut(s)	535
PpsI	GAGTC	1 cut(s)	535
Ppu21I	YACGTR	1 cut(s)	379
PpuMI	RGGWCCY	1 cut(s)	587
Psp5II	RGGWCCY	1 cut(s)	587
Psp6I	CCWGG	4 cut(s)	51, 211, 391, 599
PspGI	CCWGG	4 cut(s)	51, 211, 391, 599
PspPI	GGNCC	2 cut(s)	55, 587
PspPPI	RGGWCCY	1 cut(s)	587
RseI	CAYNNNNRTG	1 cut(s)	18
SapI	GCTCTTC	1 cut(s)	137
SatI	GCNGC	3 cut(s)	145, 615, 633
Sau3AI	GATC	1 cut(s)	60
Sau96I	GGNCC	2 cut(s)	55, 587
SchI	GAGTC	1 cut(s)	535
ScrFI	CCNGG	4 cut(s)	53, 213, 393, 601
SexAI	ACCWGGT	1 cut(s)	211
SfaNI	GCATC	1 cut(s)	58
SfcI	CTRYAG	1 cut(s)	307
SinI	GGWCC	2 cut(s)	55, 587
SmiMI	CAYNNNNRTG	1 cut(s)	18
Sse9I	AATT	2 cut(s)	104, 527
SseBI	AGGCCT	1 cut(s)	122
SsiI	CCGC	1 cut(s)	621
SspI	AATATT	1 cut(s)	271
SspMI	CTAG	1 cut(s)	637
StuI	AGGCCT	1 cut(s)	122
StyD4I	CCNGG	4 cut(s)	51, 211, 391, 599
StyI	CCWWGG	2 cut(s)	550, 583
TaaI	ACNGT	2 cut(s)	325, 361
TaiI	ACGT	1 cut(s)	381
TaqI	TCGA	2 cut(s)	246, 496
TasI	AATT	2 cut(s)	104, 527
TfiI	GAWTC	2 cut(s)	371, 606
TscAI	CASTG	3 cut(s)	44, 163, 465
TseFI	GTSAC	1 cut(s)	456
TseI	GCWGC	3 cut(s)	144, 614, 632
Tsp45I	GTSAC	1 cut(s)	456
TspDTI	ATGAA	4 cut(s)	124, 281, 345, 368
TspGWI	ACGGA	1 cut(s)	242
TspRI	CASTG	3 cut(s)	44, 163, 465
VpaK11BI	GGWCC	2 cut(s)	55, 587
XagI	CCTNNNNNAGG	1 cut(s)	549
XceI	RCATGY	1 cut(s)	263
XmiI	GTMKAC	1 cut(s)	314
XspI	CTAG	1 cut(s)	637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.