Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003913

Physical Location & Seq

Genomic Coordinates Reverse (-)

18606398 .. 18607111

Gene Structure 714 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G45870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGAAAACATCTCAAGAACAGCATGTATGCGGTTCGACAGTAGTACAAACTATCAATGCTCCGTTACCTCTAGTATGGTCGATCCTACGTCGATTTGATAACCCAAAAACATTTAAACATTTCGTAAAAACTTGTAAACTACGCTCCGGCGATGGAGGAGAAGGCTCTGTCCGTGAAGTCACGGTGGTTTCCGATCTTCCGGCGAGTTTTAGCCTAGAAAGATTAGATGAACTTGACGATGAGTCTCATGTGATGGTGATCAGCATTATTGGTGGTGATCATCGTTTGGTTAATTACCAGTCGAAAACTACGGTGTTTGTGGCGGCGGAGGAGGAGAAGACAGTGGTTGTGGAGAGTTATGTGGTGGATGTGCCGGAAGGAAATACTGAGGAAGAAACTACGTTGTTTGCTGATACTATCGTTGGGTGTAATCTTAGGTCATTGGCTAAGTTATCGGAGAAGATGATGGAGCTCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007154 GO:0007165 GO:0008150 GO:0008289 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009892 GO:0009987 GO:0010033 GO:0010427 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019840 GO:0019888 GO:0023052 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031406 GO:0032268 GO:0032269 GO:0032515 GO:0032870 GO:0033293 GO:0033993 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0036094 GO:0038023 GO:0042221 GO:0042562 GO:0042802 GO:0042803 GO:0043086 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0044092 GO:0044424 GO:0044464 GO:0045936 GO:0046983 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0098772 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Polyketide_cyc2

Protein Analysis

159

Amino Acids

17.63

Weight (kDa)

4.9

Isoelectric Point (pI)

46.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Polyketide_cyc2	PF10604	13 - 153	2e-13	Polyketide cyclase / dehydrase and lipid transport
Bet_v_1	PF00407	35 - 117	7.4e-06	Pathogenesis-related protein Bet v 1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45860 AT5G45870
fragaria_vesca	FvH4_3g07710 FvH4_3g07720 FvH4_3g07731
malus_domestica	MD05G1300200.v1.1
prunus_persica	Prupe.4G062100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0010891 RchiOBHm_Chr5g0010921
rosa_laevigata	RLG00000031795 RLG00000031796 RLG00000031797
rosa_multiflora	Rmu_co8447663.1_g000001 Rmu_sc0000109.1_g000001 Rmu_sc0001895.1_g000005 Rmu_sc0001895.1_g000006
rosa_roxburghii	Rroxscaffold_1G00065450 Rroxscaffold_1G00065460 Rroxscaffold_1G00065470
rosa_rugosa	Rorug04G0453600 Rorug04G0453700 Rorug04G0453800
rosa_samantha	Rh5AG086300 Rh5BG080600 Rh5BG080700 Rh5BG080800 Rh5CG093000 Rh5CG093300 Rh5DG080800 Rh5DG080900
rosa_wichuraiana	Rw0G017440 Rw0G017450 Rw0G017890 Rw0G017900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	30, 323, 326
AclWI	GGATC	1 cut(s)	76
AfaI	GTAC	1 cut(s)	45
AhdI	GACNNNNNGTC	1 cut(s)	241
AluBI	AGCT	1 cut(s)	472
AluI	AGCT	1 cut(s)	472
Alw21I	GWGCWC	1 cut(s)	474
Alw26I	GTCTC	1 cut(s)	249
AlwI	GGATC	1 cut(s)	76
AsuHPI	GGTGA	2 cut(s)	268, 287
BaeI	ACNNNNGTAYC	2 cut(s)	405, 438
BanII	GRGCYC	1 cut(s)	474
BbsI	GAAGAC	1 cut(s)	344
Bbv12I	GWGCWC	1 cut(s)	474
BccI	CCATC	3 cut(s)	146, 247, 460
BclI	TGATCA	2 cut(s)	258, 277
BcoDI	GTCTC	1 cut(s)	249
BfaI	CTAG	2 cut(s)	71, 215
BisI	GCNGC	1 cut(s)	324
BlsI	GCNGC	1 cut(s)	325
BmeRI	GACNNNNNGTC	1 cut(s)	241
BpiI	GAAGAC	1 cut(s)	344
BsaBI	GATNNNNATC	1 cut(s)	257
Bse1I	ACTGG	1 cut(s)	298
Bse8I	GATNNNNATC	1 cut(s)	257
BseGI	GGATG	1 cut(s)	373
BseJI	GATNNNNATC	1 cut(s)	257
BseMII	CTCAG	1 cut(s)	378
BseNI	ACTGG	1 cut(s)	298
BseRI	GAGGAG	3 cut(s)	171, 344, 347
BsiHKAI	GWGCWC	1 cut(s)	474
BsiSI	CCGG	3 cut(s)	147, 200, 374
BsmAI	GTCTC	1 cut(s)	249
Bsp1286I	GDGCHC	1 cut(s)	474
Bsp143I	GATC	4 cut(s)	81, 193, 258, 277
BspACI	CCGC	3 cut(s)	30, 323, 326
BspCNI	CTCAG	1 cut(s)	379
BspPI	GGATC	1 cut(s)	76
BsrI	ACTGG	1 cut(s)	298
BssMI	GATC	4 cut(s)	81, 193, 258, 277
Bst4CI	ACNGT	4 cut(s)	40, 184, 313, 343
BstDEI	CTNAG	3 cut(s)	387, 434, 447
BstF5I	GGATG	1 cut(s)	373
BstKTI	GATC	4 cut(s)	84, 196, 261, 280
BstMAI	GTCTC	1 cut(s)	249
BstMBI	GATC	4 cut(s)	81, 193, 258, 277
BstNSI	RCATGY	1 cut(s)	26
BstV2I	GAAGAC	1 cut(s)	344
BtgZI	GCGATG	1 cut(s)	165
BtsCI	GGATG	1 cut(s)	373
BtsIMutI	CAGTG	1 cut(s)	348
Csp6I	GTAC	1 cut(s)	44
CviAII	CATG	2 cut(s)	23, 248
CviJI	RGCY	4 cut(s)	165, 213, 446, 472
CviKI_1	RGCY	4 cut(s)	165, 213, 446, 472
CviQI	GTAC	1 cut(s)	44
DdeI	CTNAG	3 cut(s)	387, 434, 447
DpnI	GATC	4 cut(s)	83, 195, 260, 279
DpnII	GATC	4 cut(s)	81, 193, 258, 277
DraI	TTTAAA	1 cut(s)	115
DriI	GACNNNNNGTC	1 cut(s)	241
Eam1105I	GACNNNNNGTC	1 cut(s)	241
EciI	GGCGGA	1 cut(s)	341
Ecl136II	GAGCTC	1 cut(s)	472
Eco24I	GRGCYC	1 cut(s)	474
Eco53kI	GAGCTC	1 cut(s)	472
EcoICRI	GAGCTC	1 cut(s)	472
EcoT38I	GRGCYC	1 cut(s)	474
FaeI	CATG	2 cut(s)	26, 251
FaiI	YATR	5 cut(s)	24, 28, 76, 249, 360
FatI	CATG	2 cut(s)	22, 247
FbaI	TGATCA	2 cut(s)	258, 277
Fnu4HI	GCNGC	1 cut(s)	324
FokI	GGATG	1 cut(s)	380
FriOI	GRGCYC	1 cut(s)	474
Fsp4HI	GCNGC	1 cut(s)	324
FspBI	CTAG	2 cut(s)	71, 215
GluI	GCNGC	1 cut(s)	324
HapII	CCGG	3 cut(s)	147, 200, 374
Hin1II	CATG	2 cut(s)	26, 251
HinfI	GANTC	1 cut(s)	242
HpaII	CCGG	3 cut(s)	147, 200, 374
HphI	GGTGA	2 cut(s)	268, 287
Hpy166II	GTNNAC	1 cut(s)	137
Hpy188I	TCNGA	2 cut(s)	193, 457
Hpy188III	TCNNGA	1 cut(s)	14
Hpy8I	GTNNAC	1 cut(s)	137
Hpy99I	CGWCG	1 cut(s)	93
HpyAV	CCTTC	2 cut(s)	155, 371
HpyCH4III	ACNGT	4 cut(s)	40, 184, 313, 343
HpyCH4IV	ACGT	2 cut(s)	88, 401
HpyF3I	CTNAG	3 cut(s)	387, 434, 447
HpySE526I	ACGT	2 cut(s)	88, 401
Hsp92II	CATG	2 cut(s)	26, 251
Ksp22I	TGATCA	2 cut(s)	258, 277
Kzo9I	GATC	4 cut(s)	81, 193, 258, 277
LmnI	GCTCC	3 cut(s)	64, 149, 469
LpnPI	CCDG	4 cut(s)	160, 213, 311, 387
MaeI	CTAG	2 cut(s)	71, 215
MaeII	ACGT	2 cut(s)	88, 401
MaeIII	GTNAC	2 cut(s)	63, 178
MalI	GATC	4 cut(s)	83, 195, 260, 279
MboI	GATC	4 cut(s)	81, 193, 258, 277
MboII	GAAGA	4 cut(s)	188, 349, 404, 472
MhlI	GDGCHC	1 cut(s)	474
MluCI	AATT	1 cut(s)	292
MlyI	GAGTC	1 cut(s)	251
MnlI	CCTC	5 cut(s)	78, 149, 322, 325, 382
MseI	TTAA	3 cut(s)	114, 291, 478
MspI	CCGG	3 cut(s)	147, 200, 374
NdeII	GATC	4 cut(s)	81, 193, 258, 277
NlaIII	CATG	2 cut(s)	26, 251
NmuCI	GTSAC	1 cut(s)	178
NspI	RCATGY	1 cut(s)	26
PkrI	GCNGC	1 cut(s)	325
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
Psp124BI	GAGCTC	1 cut(s)	474
RsaI	GTAC	1 cut(s)	45
RsaNI	GTAC	1 cut(s)	44
SacI	GAGCTC	1 cut(s)	474
SaqAI	TTAA	3 cut(s)	114, 291, 478
SatI	GCNGC	1 cut(s)	324
Sau3AI	GATC	4 cut(s)	81, 193, 258, 277
SchI	GAGTC	1 cut(s)	251
SduI	GDGCHC	1 cut(s)	474
SetI	ASST	5 cut(s)	70, 91, 404, 440, 474
SmlI	CTYRAG	1 cut(s)	12
SmoI	CTYRAG	1 cut(s)	12
Sse9I	AATT	1 cut(s)	292
SsiI	CCGC	3 cut(s)	30, 323, 326
SspMI	CTAG	2 cut(s)	71, 215
SstI	GAGCTC	1 cut(s)	474
TaaI	ACNGT	4 cut(s)	40, 184, 313, 343
TaiI	ACGT	2 cut(s)	91, 404
TaqI	TCGA	4 cut(s)	35, 80, 91, 302
TasI	AATT	1 cut(s)	292
TatI	WGTACW	1 cut(s)	43
TauI	GCSGC	1 cut(s)	326
Tru1I	TTAA	3 cut(s)	114, 291, 478
Tru9I	TTAA	3 cut(s)	114, 291, 478
TscAI	CASTG	1 cut(s)	348
TseFI	GTSAC	1 cut(s)	178
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	2 cut(s)	17, 243
TspGWI	ACGGA	2 cut(s)	51, 161
TspRI	CASTG	1 cut(s)	348
XceI	RCATGY	1 cut(s)	26
XspI	CTAG	2 cut(s)	71, 215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.