AT5G46550

bromo domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0006276
Physical Location & Seq
Reverse (-)
18884218 .. 18886960
2743 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G46550.1

Sequence Viewer

Length: 1485 bp
ATGGTTGCGATACCCAATATTAAGATAAAGTTTGGTCCTCAAGGTTCTGTCAGAACATTCCAAACGTTGTCTGATAGTTCGAAGAAAATTGAGCATGTAGTGACTGAAGATTTATCTCAATCCTCGGAGAAATCAAAGAAGCGTGGTGGGCCTAAAGAGCTAGATGAAGTTCAACCTAAGAAGAAGCAGAGGCTGGATTGTGATTGGTCTAGTCAATGTTTGGCATTGTTACGTTTTTTGATGGAGCACCGTGGTGGATGGCTCTTTAAGGAGCCTGTTGATCCTGTTAAAATGGAGATTCCTGATTACTTCAATGTCATACAAAAGCCAATGGATTTAGGCACTGTCAAATCGAAACTTTTGAAGAATGTCTACAGTAATGCTGATGAGTTTGCAGCGGATGTTCGGTTAACTTTTGCCAATGCGATGCATTATAATCCTCTGTGGAATGAGGTTCACACGATTGCAAAGGAGATTAATGAGATTTTTGAGGTTAGATGGGAATCACTCATGAAGAAAAAGGTTTTGAGGTTATCCTGGAATGAAGTTAGAGAAGGTTATAAGAGACAGCCAGTTGAACGTGATTGTTCTAGACGGAGCAGCACTGGAACATCAGCTTCCTCTGGGGTGGGATTGACGAAACCAGCTAAAGAGAACTCCGAAAAGGGTTCTCTTTCGTCCAAGCCAGTGAAAGTGCAGAGCAAAAAGAATACTCCTGCTGTGACGCCTAAAGCATTAGCAACCTGTAAATGTGGTAGGATAATTTGCATATGCCTCAAGTCCTGTAGCTCATTTGGAAGTGACGTTTGTTCGTTAACGGATTGTCAATTAAAGAACATTTCAGGTGCACAAGCGAGCGAGTTAGATCCTCAATCTAATGGGTCTGACACTTCAAAGAAGGAGAGAAATGGTAGTCTCAAGTCTCAGCTTGATAAACCTTCAAACAGTGATCTGTTGGGTAATGAGTTGAAAACGGCTTTTCCTGCTCTGCCGCCGGTACCTCCTGAGAAAGCTCTTCGTGCTGCAATACTCAAAGCTCAATATGCAGGAACCATCATAAAAGCTAAACACAGAATAGTCCTTGGCCAGAATAACAAAGCTGATCTGATTAGAATACAGATAGAAAAGGAACAGATGGAAAGAGCACAACGTGAAGAGAAAGCTAGAATTGAAGCCGAGATGAGAGCTGCTAAGGTTGCTGAACGAATGAGGGCACAAGACGAGTTGAAACAGAAACGTGAGAGTCAACGGCTTGAAATAGCAAAGATGAAAAAAGGCTTCGATTTTGAACGGAACAACCACTCGAAATTGAAGAAAAAATTCGTTAAAGTCTGTGGCTGCTTTAGTCTGACAAAAGCTCGGTTGTTACTTGAAGAGTTGGGTCTGGTTTTGAAAAATGATTATTGTCCGGAACTGGAAGTGATCGGGTCAGAAAAATTTGATGCAATGAGAATGGACGATCTTGAGGAAGGAGAGATCCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromodomain

Protein Analysis

494

Amino Acids

55.62

Weight (kDa)

9.32

Isoelectric Point (pI)

45.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 73 - 156 2.9e-19 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 435, 561
Acc65I GGTACC 1 cut(s) 997
AccB1I GGYRCC 1 cut(s) 997
AccI GTMKAC 1 cut(s) 372
AccIII TCCGGA 1 cut(s) 1408
AciI CCGC 2 cut(s) 398, 992
AclI AACGTT 1 cut(s) 65
AclWI GGATC 3 cut(s) 275, 860, 1471
AcoI YGGCCR 1 cut(s) 1084
AcsI RAATTY 2 cut(s) 1319, 1436
AcuI CTGAAG 1 cut(s) 126
AcyI GRCGYC 1 cut(s) 725
AdeI CACNNNGTG 1 cut(s) 1151
AfaI GTAC 1 cut(s) 999
AjnI CCWGG 1 cut(s) 536
AleI CACNNNNGTG 1 cut(s) 252
Alw21I GWGCWC 3 cut(s) 249, 850, 1147
Alw26I GTCTC 3 cut(s) 559, 920, 927
Alw44I GTGCAC 1 cut(s) 846
AlwI GGATC 3 cut(s) 275, 860, 1471
AlwNI CAGNNNCTG 1 cut(s) 193
Aor13HI TCCGGA 1 cut(s) 1408
AoxI GGCC 2 cut(s) 149, 1084
ApaLI GTGCAC 1 cut(s) 846
ApeKI GCWGC 5 cut(s) 395, 600, 1022, 1187, 1338
ApoI RAATTY 2 cut(s) 1319, 1436
AseI ATTAAT 1 cut(s) 477
Asp700I GAANNNNTTC 1 cut(s) 1319
Asp718I GGTACC 1 cut(s) 997
AspS9I GGNCC 2 cut(s) 35, 149
AsuII TTCGAA 1 cut(s) 80
AvaII GGWCC 1 cut(s) 35
BaeGI GKGCMC 2 cut(s) 850, 1216
BalI TGGCCA 1 cut(s) 1086
BanI GGYRCC 1 cut(s) 997
BarI GAAGNNNNNNTAC 2 cut(s) 356, 388
Bbv12I GWGCWC 3 cut(s) 249, 850, 1147
BbvI GCAGC 5 cut(s) 407, 612, 1009, 1174, 1325
BccI CCATC 5 cut(s) 235, 252, 492, 1061, 1129
BceAI ACGGC 2 cut(s) 990, 1265
BciT130I CCWGG 1 cut(s) 538
BcoDI GTCTC 3 cut(s) 559, 920, 927
BfaI CTAG 4 cut(s) 161, 210, 591, 1164
BfmI CTRYAG 2 cut(s) 373, 784
BisI GCNGC 6 cut(s) 396, 601, 992, 1023, 1188, 1339
BlsI GCNGC 6 cut(s) 397, 602, 993, 1024, 1189, 1340
Bme1390I CCNGG 1 cut(s) 538
Bme18I GGWCC 1 cut(s) 35
BmgT120I GGNCC 2 cut(s) 35, 149
BmiI GGNNCC 3 cut(s) 273, 999, 1051
BmrFI CCNGG 1 cut(s) 538
BmsI GCATC 2 cut(s) 417, 1432
Bpu10I CCTNAGC 1 cut(s) 1191
Bpu14I TTCGAA 1 cut(s) 80
BpuEI CTTGAG 4 cut(s) 24, 761, 902, 1484
BsaBI GATNNNNATC 1 cut(s) 502
BsaHI GRCGYC 1 cut(s) 725
BsaJI CCNNGG 3 cut(s) 123, 250, 1081
BsaWI WCCGGW 1 cut(s) 1408
Bse118I RCCGGY 1 cut(s) 994
Bse1I ACTGG 4 cut(s) 572, 610, 686, 1419
Bse3DI GCAATG 1 cut(s) 1452
Bse8I GATNNNNATC 1 cut(s) 502
BseAI TCCGGA 1 cut(s) 1408
BseBI CCWGG 1 cut(s) 538
BseDI CCNNGG 3 cut(s) 123, 250, 1081
BseGI GGATG 2 cut(s) 263, 406
BseJI GATNNNNATC 1 cut(s) 502
BseMI GCAATG 1 cut(s) 1452
BseMII CTCAG 2 cut(s) 938, 996
BseNI ACTGG 4 cut(s) 572, 610, 686, 1419
BseSI GKGCMC 2 cut(s) 850, 1216
BseXI GCAGC 5 cut(s) 407, 612, 1009, 1174, 1325
BsgI GTGCAG 1 cut(s) 716
BshFI GGCC 2 cut(s) 151, 1086
BshNI GGYRCC 1 cut(s) 997
BsiHKAI GWGCWC 3 cut(s) 249, 850, 1147
BsiSI CCGG 2 cut(s) 995, 1409
BsmAI GTCTC 3 cut(s) 559, 920, 927
BsnI GGCC 2 cut(s) 151, 1086
Bsp119I TTCGAA 1 cut(s) 80
Bsp1286I GDGCHC 4 cut(s) 249, 850, 1147, 1216
Bsp13I TCCGGA 1 cut(s) 1408
Bsp143I GATC 7 cut(s) 280, 865, 949, 1102, 1422, 1459, 1476
BspACI CCGC 2 cut(s) 398, 992
BspANI GGCC 2 cut(s) 151, 1086
BspCNI CTCAG 2 cut(s) 937, 997
BspEI TCCGGA 1 cut(s) 1408
BspHI TCATGA 1 cut(s) 510
BspLI GGNNCC 3 cut(s) 273, 999, 1051
BspPI GGATC 3 cut(s) 275, 860, 1471
BspQI GCTCTTC 1 cut(s) 1020
BspT104I TTCGAA 1 cut(s) 80
BspT107I GGYRCC 1 cut(s) 997
BsrDI GCAATG 1 cut(s) 1452
BsrFI RCCGGY 1 cut(s) 994
BsrI ACTGG 4 cut(s) 572, 610, 686, 1419
BssAI RCCGGY 1 cut(s) 994
BssECI CCNNGG 3 cut(s) 123, 250, 1081
BssMI GATC 7 cut(s) 280, 865, 949, 1102, 1422, 1459, 1476
BssNI GRCGYC 1 cut(s) 725
BssT1I CCWWGG 1 cut(s) 1081
Bst2UI CCWGG 1 cut(s) 538
Bst4CI ACNGT 4 cut(s) 251, 346, 377, 947
Bst6I CTCTTC 3 cut(s) 1020, 1149, 1368
BstACI GRCGYC 1 cut(s) 725
BstBI TTCGAA 1 cut(s) 80
BstC8I GCNNGC 1 cut(s) 856
BstDEI CTNAG 4 cut(s) 177, 924, 1005, 1191
BstDSI CCRYGG 1 cut(s) 250
BstF5I GGATG 2 cut(s) 263, 406
BstKTI GATC 7 cut(s) 283, 868, 952, 1105, 1425, 1462, 1479
BstMAI GTCTC 3 cut(s) 559, 920, 927
BstMBI GATC 7 cut(s) 280, 865, 949, 1102, 1422, 1459, 1476
BstMWI GCNNNNNNNGC 6 cut(s) 148, 157, 983, 1019, 1043, 1196
BstNI CCWGG 1 cut(s) 538
BstNSI RCATGY 1 cut(s) 98
BstSCI CCNGG 1 cut(s) 536
BstSFI CTRYAG 2 cut(s) 373, 784
BstSLI GKGCMC 2 cut(s) 850, 1216
BstV1I GCAGC 5 cut(s) 407, 612, 1009, 1174, 1325
BstX2I RGATCY 2 cut(s) 865, 1476
BstYI RGATCY 2 cut(s) 865, 1476
BsuRI GGCC 2 cut(s) 151, 1086
BtgI CCRYGG 1 cut(s) 250
BtgZI GCGATG 1 cut(s) 440
BtsCI GGATG 2 cut(s) 263, 406
BtsIMutI CAGTG 4 cut(s) 342, 603, 693, 952
Cac8I GCNNGC 1 cut(s) 856
CaiI CAGNNNCTG 1 cut(s) 193
CciI TCATGA 1 cut(s) 510
Cfr10I RCCGGY 1 cut(s) 994
Cfr13I GGNCC 2 cut(s) 35, 149
CseI GACGC 1 cut(s) 733
Csp6I GTAC 1 cut(s) 998
CviAII CATG 2 cut(s) 95, 511
CviQI GTAC 1 cut(s) 998
DdeI CTNAG 4 cut(s) 177, 924, 1005, 1191
DpnI GATC 7 cut(s) 282, 867, 951, 1104, 1424, 1461, 1478
DpnII GATC 7 cut(s) 280, 865, 949, 1102, 1422, 1459, 1476
DraIII CACNNNGTG 1 cut(s) 1151
EaeI YGGCCR 1 cut(s) 1084
Eam1104I CTCTTC 3 cut(s) 1020, 1149, 1368
EarI CTCTTC 3 cut(s) 1020, 1149, 1368
Eco130I CCWWGG 1 cut(s) 1081
Eco47I GGWCC 1 cut(s) 35
Eco57I CTGAAG 1 cut(s) 126
EcoRII CCWGG 1 cut(s) 536
EcoT14I CCWWGG 1 cut(s) 1081
EcoT22I ATGCAT 1 cut(s) 432
ErhI CCWWGG 1 cut(s) 1081
FaeI CATG 2 cut(s) 98, 514
FaiI YATR 9 cut(s) 96, 320, 435, 512, 561, 770, 772, 1044, 1058
FatI CATG 2 cut(s) 94, 510
FauNDI CATATG 1 cut(s) 770
FblI GTMKAC 1 cut(s) 372
Fnu4HI GCNGC 6 cut(s) 396, 601, 992, 1023, 1188, 1339
FokI GGATG 2 cut(s) 270, 413
Fsp4HI GCNGC 6 cut(s) 396, 601, 992, 1023, 1188, 1339
FspBI CTAG 4 cut(s) 161, 210, 591, 1164
GluI GCNGC 6 cut(s) 396, 601, 992, 1023, 1188, 1339
HaeIII GGCC 2 cut(s) 151, 1086
HapII CCGG 2 cut(s) 995, 1409
HgaI GACGC 1 cut(s) 733
Hin1I GRCGYC 1 cut(s) 725
Hin1II CATG 2 cut(s) 98, 514
HincII GTYRAC 3 cut(s) 411, 816, 1247
HindII GTYRAC 3 cut(s) 411, 816, 1247
HinfI GANTC 3 cut(s) 298, 503, 1243
HpaI GTTAAC 2 cut(s) 411, 816
HpaII CCGG 2 cut(s) 995, 1409
Hpy166II GTNNAC 6 cut(s) 373, 411, 457, 816, 848, 1247
Hpy188I TCNGA 8 cut(s) 53, 73, 127, 661, 886, 1107, 1350, 1432
Hpy188III TCNNGA 6 cut(s) 302, 511, 591, 1004, 1409, 1463
Hpy8I GTNNAC 6 cut(s) 373, 411, 457, 816, 848, 1247
HpyAV CCTTC 4 cut(s) 548, 892, 948, 1463
HpyCH4III ACNGT 4 cut(s) 251, 346, 377, 947
HpyCH4IV ACGT 6 cut(s) 65, 232, 580, 804, 1150, 1237
HpyCH4V TGCA 9 cut(s) 395, 430, 467, 697, 768, 848, 1025, 1046, 1445
HpyF10VI GCNNNNNNNGC 6 cut(s) 148, 157, 983, 1019, 1043, 1196
HpyF3I CTNAG 4 cut(s) 177, 924, 1005, 1191
HpySE526I ACGT 6 cut(s) 65, 232, 580, 804, 1150, 1237
Hsp92I GRCGYC 1 cut(s) 725
Hsp92II CATG 2 cut(s) 98, 514
Kpn2I TCCGGA 1 cut(s) 1408
KpnI GGTACC 1 cut(s) 1001
KspAI GTTAAC 2 cut(s) 411, 816
Kzo9I GATC 7 cut(s) 280, 865, 949, 1102, 1422, 1459, 1476
LguI GCTCTTC 1 cut(s) 1020
LmnI GCTCC 3 cut(s) 244, 271, 597
Lsp1109I GCAGC 5 cut(s) 407, 612, 1009, 1174, 1325
LweI GCATC 2 cut(s) 417, 1432
MaeI CTAG 4 cut(s) 161, 210, 591, 1164
MaeII ACGT 6 cut(s) 65, 232, 580, 804, 1150, 1237
MaeIII GTNAC 5 cut(s) 100, 228, 721, 800, 1365
MalI GATC 7 cut(s) 282, 867, 951, 1104, 1424, 1461, 1478
MboI GATC 7 cut(s) 280, 865, 949, 1102, 1422, 1459, 1476
MboII GAAGA 9 cut(s) 94, 119, 193, 376, 526, 1007, 1166, 1324, 1385
MflI RGATCY 2 cut(s) 865, 1476
MhlI GDGCHC 4 cut(s) 249, 850, 1147, 1216
MlsI TGGCCA 1 cut(s) 1086
MluCI AATT 7 cut(s) 87, 762, 827, 1167, 1307, 1319, 1436
MluNI TGGCCA 1 cut(s) 1086
MlyI GAGTC 1 cut(s) 1252
Mox20I TGGCCA 1 cut(s) 1086
Mph1103I ATGCAT 1 cut(s) 432
MroI TCCGGA 1 cut(s) 1408
MroXI GAANNNNTTC 1 cut(s) 1319
MscI TGGCCA 1 cut(s) 1086
MseI TTAA 8 cut(s) 21, 267, 288, 410, 477, 815, 830, 1326
MslI CAYNNNNRTG 1 cut(s) 252
Msp20I TGGCCA 1 cut(s) 1086
MspA1I CMGCKG 1 cut(s) 398
MspI CCGG 2 cut(s) 995, 1409
MspR9I CCNGG 1 cut(s) 538
MvaI CCWGG 1 cut(s) 538
MwoI GCNNNNNNNGC 6 cut(s) 148, 157, 983, 1019, 1043, 1196
NdeI CATATG 1 cut(s) 770
NdeII GATC 7 cut(s) 280, 865, 949, 1102, 1422, 1459, 1476
NlaIII CATG 2 cut(s) 98, 514
NlaIV GGNNCC 3 cut(s) 273, 999, 1051
NmeAIII GCCGAG 1 cut(s) 1201
NmuCI GTSAC 3 cut(s) 100, 721, 800
NsiI ATGCAT 1 cut(s) 432
NspI RCATGY 1 cut(s) 98
NspV TTCGAA 1 cut(s) 80
OliI CACNNNNGTG 1 cut(s) 252
PagI TCATGA 1 cut(s) 510
PciSI GCTCTTC 1 cut(s) 1020
PdmI GAANNNNTTC 1 cut(s) 1319
PfeI GAWTC 2 cut(s) 298, 503
PfoI TCCNGGA 1 cut(s) 536
PkrI GCNGC 6 cut(s) 397, 602, 993, 1024, 1189, 1340
PleI GAGTC 1 cut(s) 1251
PpsI GAGTC 1 cut(s) 1251
PshBI ATTAAT 1 cut(s) 477
PsiI TTATAA 2 cut(s) 435, 561
Psp1406I AACGTT 1 cut(s) 65
Psp6I CCWGG 1 cut(s) 536
PspGI CCWGG 1 cut(s) 536
PspN4I GGNNCC 3 cut(s) 273, 999, 1051
PspPI GGNCC 2 cut(s) 35, 149
PstNI CAGNNNCTG 1 cut(s) 193
PsuI RGATCY 2 cut(s) 865, 1476
RsaI GTAC 1 cut(s) 999
RsaNI GTAC 1 cut(s) 998
RseI CAYNNNNRTG 1 cut(s) 252
SapI GCTCTTC 1 cut(s) 1020
SaqAI TTAA 8 cut(s) 21, 267, 288, 410, 477, 815, 830, 1326
SatI GCNGC 6 cut(s) 396, 601, 992, 1023, 1188, 1339
Sau3AI GATC 7 cut(s) 280, 865, 949, 1102, 1422, 1459, 1476
Sau96I GGNCC 2 cut(s) 35, 149
SchI GAGTC 1 cut(s) 1252
ScrFI CCNGG 1 cut(s) 538
SduI GDGCHC 4 cut(s) 249, 850, 1147, 1216
SfaNI GCATC 2 cut(s) 417, 1432
SfcI CTRYAG 2 cut(s) 373, 784
SfuI TTCGAA 1 cut(s) 80
SinI GGWCC 1 cut(s) 35
SmiMI CAYNNNNRTG 1 cut(s) 252
SmlI CTYRAG 4 cut(s) 39, 776, 917, 1463
SmoI CTYRAG 4 cut(s) 39, 776, 917, 1463
Sse9I AATT 7 cut(s) 87, 762, 827, 1167, 1307, 1319, 1436
SsiI CCGC 2 cut(s) 398, 992
SspI AATATT 1 cut(s) 19
SspMI CTAG 4 cut(s) 161, 210, 591, 1164
StyD4I CCNGG 1 cut(s) 536
StyI CCWWGG 1 cut(s) 1081
TaaI ACNGT 4 cut(s) 251, 346, 377, 947
TaiI ACGT 6 cut(s) 68, 235, 583, 807, 1153, 1240
TaqI TCGA 4 cut(s) 80, 353, 1281, 1304
TasI AATT 7 cut(s) 87, 762, 827, 1167, 1307, 1319, 1436
TauI GCSGC 1 cut(s) 994
TfiI GAWTC 2 cut(s) 298, 503
Tru1I TTAA 8 cut(s) 21, 267, 288, 410, 477, 815, 830, 1326
Tru9I TTAA 8 cut(s) 21, 267, 288, 410, 477, 815, 830, 1326
TscAI CASTG 4 cut(s) 349, 610, 693, 952
TseFI GTSAC 3 cut(s) 100, 721, 800
TseI GCWGC 5 cut(s) 395, 600, 1022, 1187, 1338
Tsp45I GTSAC 3 cut(s) 100, 721, 800
TspDTI ATGAA 4 cut(s) 180, 527, 558, 1283
TspGWI ACGGA 3 cut(s) 610, 833, 1306
TspRI CASTG 4 cut(s) 349, 610, 693, 952
VneI GTGCAC 1 cut(s) 846
VpaK11BI GGWCC 1 cut(s) 35
VspI ATTAAT 1 cut(s) 477
XapI RAATTY 2 cut(s) 1319, 1436
XbaI TCTAGA 1 cut(s) 590
XceI RCATGY 1 cut(s) 98
XmiI GTMKAC 1 cut(s) 372
XmnI GAANNNNTTC 1 cut(s) 1319
XspI CTAG 4 cut(s) 161, 210, 591, 1164
Zsp2I ATGCAT 1 cut(s) 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.