Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006276

Physical Location & Seq

Genomic Coordinates Reverse (-)

18725685 .. 18726440

Gene Structure 756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g25881.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGTTGAAAATCAAATTGATGTATAAATCTCCTGATGGACAAGTGATCGTTAAGCATCTGAGCTATTATGCTAAGAAGAGGGGAGCTCCGGGGCCGAGAGAGAAGAAACTGAAGATGGATCCTTCAATCTCTAATAGGAGAATCTCTAAAGTGAAAAGAATCTCAAAGGTCTCGTGTCGGCAAATAAAGCAAATAACTGCTGCAAGGCTGAAATCTACTCTGTCCACTCACAATGTGACCAAAAGCAAAGAGAATGTTGAAATTGCTTTTGCTGCACCTGATCATGGTCAGGTAGAGCTCGCCAGTACAGTCAAACCCTCCACTCCTGTCTTTAGTGTTCCACTATCACCAAAACAGGGTCTTCATGCTGCAAGGATCAAGCTTTCCTTTGCGGACGCTATTGTCAAAGGTAATAATGCACAGAGCTTCCAACAACAAAAGGCAATCTTTGAGCGGGAGCAGTTCGAAGAGATTGCAAGGCTTGAAGCCATAGTGACAGAAGGAGATAGAGAAGAAGCTCGTGTTGCCCTTGAAAAGGTGGAGAGGAGGACTTGTGTGTTTGAGGACAACCTTTATATCCTTCAGGAACTTAAAAAGTTATCCAATTATTATGGTAGCTCTTGGGGACCACACTTCCGATCACCCCTGGAGCGACTTGGTTTATATTTCAAGGATGACTATACAATAGAGGTTGATGAATTGGAGGAAGGGGAGATTGTGGGGGATGGTGAATTGGAGGAAGGGGAGATTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bromodomain

Protein Analysis

252

Amino Acids

28.42

Weight (kDa)

9.0

Isoelectric Point (pI)

40.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46550
fragaria_vesca	FvH4_3g06490 FvH4_3g06490 FvH4_3g06490 FvH4_3g06490 FvH4_3g25510 FvH4_3g25881 FvH4_7g09881
malus_domestica	MD05G1292900.v1.1 MD10G1268800.v1.1
prunus_persica	Prupe.4G072500_v2.0.a1
pyrus_communis	pycom05g26940 pycom10g22530
rosa_chinensis	RchiOBHm_Chr5g0012791
rosa_laevigata	RLG00000031956
rosa_multiflora	Rmu_co8165396.1_g000001 Rmu_sc0006811.1_g000013
rosa_roxburghii	Rroxscaffold_1G00063800
rosa_rugosa	Rorug05G0004000 Rorug05G0004100 Rorug05G0004200.1 Rorug05G0004300
rosa_samantha	Rh5AG098000 Rh5BG095000 Rh5CG106900 Rh5DG093700
rosa_wichuraiana	Rw5G008570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	401
AccBSI	CCGCTC	1 cut(s)	454
AciI	CCGC	2 cut(s)	392, 454
AclWI	GGATC	3 cut(s)	113, 126, 383
AcuI	CTGAAG	2 cut(s)	131, 566
AdeI	CACNNNGTG	1 cut(s)	235
AfaI	GTAC	1 cut(s)	307
AfiI	CCNNNNNNNGG	3 cut(s)	284, 356, 535
AgsI	TTSAA	6 cut(s)	7, 126, 260, 485, 533, 670
AjnI	CCWGG	1 cut(s)	645
AluBI	AGCT	7 cut(s)	63, 86, 298, 382, 426, 518, 618
AluI	AGCT	7 cut(s)	63, 86, 298, 382, 426, 518, 618
Alw21I	GWGCWC	2 cut(s)	88, 300
Alw26I	GTCTC	1 cut(s)	175
AlwI	GGATC	3 cut(s)	113, 126, 383
AoxI	GGCC	1 cut(s)	92
ApeKI	GCWGC	3 cut(s)	200, 272, 368
AspS9I	GGNCC	2 cut(s)	92, 626
AsuC2I	CCSGG	1 cut(s)	90
AsuHPI	GGTGA	3 cut(s)	339, 633, 740
AsuII	TTCGAA	1 cut(s)	465
AvaII	GGWCC	1 cut(s)	626
BamHI	GGATCC	1 cut(s)	118
BanII	GRGCYC	2 cut(s)	88, 300
BauI	CACGAG	2 cut(s)	172, 519
BbsI	GAAGAC	1 cut(s)	353
Bbv12I	GWGCWC	2 cut(s)	88, 300
BbvI	GCAGC	3 cut(s)	187, 259, 355
BccI	CCATC	3 cut(s)	29, 109, 719
BcgI	CGANNNNNNTGC	2 cut(s)	455, 489
BciT130I	CCWGG	1 cut(s)	647
BclI	TGATCA	1 cut(s)	280
BcnI	CCSGG	1 cut(s)	90
BcoDI	GTCTC	1 cut(s)	175
BisI	GCNGC	3 cut(s)	201, 273, 369
BlsI	GCNGC	3 cut(s)	202, 274, 370
Bme1390I	CCNGG	2 cut(s)	90, 647
Bme18I	GGWCC	1 cut(s)	626
BmgT120I	GGNCC	2 cut(s)	92, 626
BmiI	GGNNCC	3 cut(s)	93, 120, 627
BmrFI	CCNGG	2 cut(s)	90, 647
BmsI	GCATC	1 cut(s)	64
BpiI	GAAGAC	1 cut(s)	353
BplI	GAGNNNNNCTC	2 cut(s)	70, 102
BpmI	CTGGAG	1 cut(s)	668
Bpu14I	TTCGAA	1 cut(s)	465
BpuMI	CCSGG	1 cut(s)	90
BsaI	GGTCTC	1 cut(s)	175
BsaJI	CCNNGG	2 cut(s)	89, 645
BsaXI	ACNNNNNCTCC	3 cut(s)	538, 568, 737
Bsc4I	CCNNNNNNNGG	3 cut(s)	284, 356, 535
Bse1I	ACTGG	1 cut(s)	303
BseBI	CCWGG	1 cut(s)	647
BseDI	CCNNGG	2 cut(s)	89, 645
BseGI	GGATG	2 cut(s)	679, 730
BseLI	CCNNNNNNNGG	3 cut(s)	284, 356, 535
BseMII	CTCAG	1 cut(s)	50
BseNI	ACTGG	1 cut(s)	303
BseRI	GAGGAG	1 cut(s)	559
BseXI	GCAGC	3 cut(s)	187, 259, 355
BsgI	GTGCAG	1 cut(s)	258
BshFI	GGCC	1 cut(s)	94
BsiHKAI	GWGCWC	2 cut(s)	88, 300
BsiSI	CCGG	1 cut(s)	89
BslFI	GGGAC	1 cut(s)	639
BslI	CCNNNNNNNGG	3 cut(s)	284, 356, 535
BsmAI	GTCTC	1 cut(s)	175
BsmFI	GGGAC	1 cut(s)	639
BsnI	GGCC	1 cut(s)	94
Bso31I	GGTCTC	1 cut(s)	175
Bsp119I	TTCGAA	1 cut(s)	465
Bsp1286I	GDGCHC	2 cut(s)	88, 300
Bsp143I	GATC	5 cut(s)	45, 118, 280, 375, 638
BspACI	CCGC	2 cut(s)	392, 454
BspANI	GGCC	1 cut(s)	94
BspCNI	CTCAG	1 cut(s)	51
BspLI	GGNNCC	3 cut(s)	93, 120, 627
BspPI	GGATC	3 cut(s)	113, 126, 383
BspT104I	TTCGAA	1 cut(s)	465
BspTNI	GGTCTC	1 cut(s)	175
BsrBI	CCGCTC	1 cut(s)	454
BsrI	ACTGG	1 cut(s)	303
BssECI	CCNNGG	2 cut(s)	89, 645
BssMI	GATC	5 cut(s)	45, 118, 280, 375, 638
BssSI	CACGAG	2 cut(s)	172, 519
Bst2BI	CACGAG	2 cut(s)	172, 519
Bst2UI	CCWGG	1 cut(s)	647
Bst4CI	ACNGT	1 cut(s)	310
Bst6I	CTCTTC	2 cut(s)	71, 462
BstBI	TTCGAA	1 cut(s)	465
BstC8I	GCNNGC	1 cut(s)	300
BstDEI	CTNAG	2 cut(s)	59, 72
BstENI	CCTNNNNNAGG	1 cut(s)	533
BstF5I	GGATG	2 cut(s)	679, 730
BstKTI	GATC	5 cut(s)	48, 121, 283, 378, 641
BstMAI	GTCTC	1 cut(s)	175
BstMBI	GATC	5 cut(s)	45, 118, 280, 375, 638
BstMWI	GCNNNNNNNGC	3 cut(s)	187, 272, 524
BstNI	CCWGG	1 cut(s)	647
BstSCI	CCNGG	2 cut(s)	88, 645
BstV1I	GCAGC	3 cut(s)	187, 259, 355
BstV2I	GAAGAC	1 cut(s)	353
BstX2I	RGATCY	1 cut(s)	118
BstYI	RGATCY	1 cut(s)	118
BsuRI	GGCC	1 cut(s)	94
BtsCI	GGATG	2 cut(s)	679, 730
Cac8I	GCNNGC	1 cut(s)	300
Cfr13I	GGNCC	2 cut(s)	92, 626
CseI	GACGC	1 cut(s)	404
Csp6I	GTAC	1 cut(s)	306
CviAII	CATG	2 cut(s)	284, 365
CviQI	GTAC	1 cut(s)	306
DdeI	CTNAG	2 cut(s)	59, 72
DpnI	GATC	5 cut(s)	47, 120, 282, 377, 640
DpnII	GATC	5 cut(s)	45, 118, 280, 375, 638
DraIII	CACNNNGTG	1 cut(s)	235
DrdI	GACNNNNNNGTC	1 cut(s)	401
DseDI	GACNNNNNNGTC	1 cut(s)	401
Eam1104I	CTCTTC	2 cut(s)	71, 462
EarI	CTCTTC	2 cut(s)	71, 462
Ecl136II	GAGCTC	2 cut(s)	86, 298
Eco24I	GRGCYC	2 cut(s)	88, 300
Eco31I	GGTCTC	1 cut(s)	175
Eco47I	GGWCC	1 cut(s)	626
Eco53kI	GAGCTC	2 cut(s)	86, 298
Eco57I	CTGAAG	2 cut(s)	131, 566
EcoICRI	GAGCTC	2 cut(s)	86, 298
EcoNI	CCTNNNNNAGG	1 cut(s)	533
EcoRII	CCWGG	1 cut(s)	645
EcoT38I	GRGCYC	2 cut(s)	88, 300
FaeI	CATG	2 cut(s)	287, 368
FaiI	YATR	9 cut(s)	24, 69, 285, 366, 491, 576, 612, 664, 681
FalI	AAGNNNNNCTT	4 cut(s)	371, 403, 431, 463
FaqI	GGGAC	1 cut(s)	639
FatI	CATG	2 cut(s)	283, 364
FauI	CCCGC	1 cut(s)	447
FbaI	TGATCA	1 cut(s)	280
Fnu4HI	GCNGC	3 cut(s)	201, 273, 369
FokI	GGATG	2 cut(s)	686, 737
FriOI	GRGCYC	2 cut(s)	88, 300
Fsp4HI	GCNGC	3 cut(s)	201, 273, 369
GluI	GCNGC	3 cut(s)	201, 273, 369
GsuI	CTGGAG	1 cut(s)	668
HaeIII	GGCC	1 cut(s)	94
HapII	CCGG	1 cut(s)	89
HgaI	GACGC	1 cut(s)	404
Hin1II	CATG	2 cut(s)	287, 368
HindIII	AAGCTT	1 cut(s)	380
HinfI	GANTC	2 cut(s)	141, 159
HpaII	CCGG	1 cut(s)	89
HphI	GGTGA	3 cut(s)	339, 633, 740
Hpy166II	GTNNAC	1 cut(s)	225
Hpy188I	TCNGA	2 cut(s)	60, 638
Hpy188III	TCNNGA	2 cut(s)	32, 584
Hpy8I	GTNNAC	1 cut(s)	225
HpyAV	CCTTC	5 cut(s)	132, 494, 590, 701, 734
HpyCH4III	ACNGT	1 cut(s)	310
HpyCH4V	TGCA	5 cut(s)	203, 275, 371, 419, 476
HpyF10VI	GCNNNNNNNGC	3 cut(s)	187, 272, 524
HpyF3I	CTNAG	2 cut(s)	59, 72
Hsp92II	CATG	2 cut(s)	287, 368
Ksp22I	TGATCA	1 cut(s)	280
Kzo9I	GATC	5 cut(s)	45, 118, 280, 375, 638
LmnI	GCTCC	4 cut(s)	83, 91, 457, 649
Lsp1109I	GCAGC	3 cut(s)	187, 259, 355
LweI	GCATC	1 cut(s)	64
MaeIII	GTNAC	2 cut(s)	235, 493
MalI	GATC	5 cut(s)	47, 120, 282, 377, 640
MbiI	CCGCTC	1 cut(s)	454
MboI	GATC	5 cut(s)	45, 118, 280, 375, 638
MboII	GAAGA	6 cut(s)	88, 115, 124, 353, 479, 524
MflI	RGATCY	1 cut(s)	118
MhlI	GDGCHC	2 cut(s)	88, 300
MluCI	AATT	5 cut(s)	14, 261, 604, 698, 731
MmeI	TCCRAC	1 cut(s)	454
MnlI	CCTC	8 cut(s)	72, 328, 537, 540, 556, 682, 697, 730
MseI	TTAA	2 cut(s)	51, 591
MspI	CCGG	1 cut(s)	89
MspR9I	CCNGG	2 cut(s)	90, 647
MvaI	CCWGG	1 cut(s)	647
MwoI	GCNNNNNNNGC	3 cut(s)	187, 272, 524
NciI	CCSGG	1 cut(s)	90
NdeII	GATC	5 cut(s)	45, 118, 280, 375, 638
NlaIII	CATG	2 cut(s)	287, 368
NlaIV	GGNNCC	3 cut(s)	93, 120, 627
NmeAIII	GCCGAG	1 cut(s)	120
NmuCI	GTSAC	2 cut(s)	235, 493
NspV	TTCGAA	1 cut(s)	465
PfeI	GAWTC	2 cut(s)	141, 159
PkrI	GCNGC	3 cut(s)	202, 274, 370
Psp124BI	GAGCTC	2 cut(s)	88, 300
Psp6I	CCWGG	1 cut(s)	645
PspGI	CCWGG	1 cut(s)	645
PspN4I	GGNNCC	3 cut(s)	93, 120, 627
PspPI	GGNCC	2 cut(s)	92, 626
PsuI	RGATCY	1 cut(s)	118
RsaI	GTAC	1 cut(s)	307
RsaNI	GTAC	1 cut(s)	306
SacI	GAGCTC	2 cut(s)	88, 300
SaqAI	TTAA	2 cut(s)	51, 591
SatI	GCNGC	3 cut(s)	201, 273, 369
Sau3AI	GATC	5 cut(s)	45, 118, 280, 375, 638
Sau96I	GGNCC	2 cut(s)	92, 626
ScrFI	CCNGG	2 cut(s)	90, 647
SduI	GDGCHC	2 cut(s)	88, 300
SfaNI	GCATC	1 cut(s)	64
SfuI	TTCGAA	1 cut(s)	465
SinI	GGWCC	1 cut(s)	626
Sse9I	AATT	5 cut(s)	14, 261, 604, 698, 731
SsiI	CCGC	2 cut(s)	392, 454
SstI	GAGCTC	2 cut(s)	88, 300
StyD4I	CCNGG	2 cut(s)	88, 645
TaaI	ACNGT	1 cut(s)	310
TaqI	TCGA	1 cut(s)	465
TasI	AATT	5 cut(s)	14, 261, 604, 698, 731
TatI	WGTACW	1 cut(s)	305
TfiI	GAWTC	2 cut(s)	141, 159
Tru1I	TTAA	2 cut(s)	51, 591
Tru9I	TTAA	2 cut(s)	51, 591
TseFI	GTSAC	2 cut(s)	235, 493
TseI	GCWGC	3 cut(s)	200, 272, 368
Tsp45I	GTSAC	2 cut(s)	235, 493
TspDTI	ATGAA	2 cut(s)	353, 711
VpaK11BI	GGWCC	1 cut(s)	626
XagI	CCTNNNNNAGG	1 cut(s)	533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.