Transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G46550 |
| fragaria_vesca | FvH4_3g06490 FvH4_3g06490 FvH4_3g06490 FvH4_3g06490 FvH4_3g25510 FvH4_3g25881 FvH4_7g09881 |
| malus_domestica | MD05G1292900.v1.1 MD10G1268800.v1.1 |
| prunus_persica | Prupe.4G072500_v2.0.a1 |
| pyrus_communis | pycom05g26940 pycom10g22530 |
| rosa_chinensis | RchiOBHm_Chr5g0012791 |
| rosa_laevigata | RLG00000031956 |
| rosa_multiflora | Rmu_co8165396.1_g000001 Rmu_sc0006811.1_g000013 |
| rosa_roxburghii | Rroxscaffold_1G00063800 |
| rosa_rugosa | Rorug05G0004000 Rorug05G0004100 Rorug05G0004200.1 Rorug05G0004300 |
| rosa_samantha | Rh5AG098000 Rh5BG095000 Rh5CG106900 Rh5DG093700 |
| rosa_wichuraiana | Rw5G008570 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1694 |
| AasI | GACNNNNNNGTC | 3 cut(s) | 688, 784, 1077 |
| AccI | GTMKAC | 2 cut(s) | 477, 922 |
| AciI | CCGC | 4 cut(s) | 421, 1011, 1291, 1449 |
| AclWI | GGATC | 7 cut(s) | 92, 249, 320, 1115, 1344, 1349, 1561 |
| AcoI | YGGCCR | 1 cut(s) | 510 |
| AcsI | RAATTY | 1 cut(s) | 47 |
| AcuI | CTGAAG | 5 cut(s) | 59, 254, 450, 915, 1464 |
| AfaI | GTAC | 1 cut(s) | 419 |
| AgsI | TTSAA | 9 cut(s) | 68, 267, 568, 590, 1247, 1424, 1480, 1564, 1583 |
| AjnI | CCWGG | 2 cut(s) | 175, 1332 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 60, 92 |
| Alw21I | GWGCWC | 1 cut(s) | 1267 |
| Alw26I | GTCTC | 1 cut(s) | 339 |
| AlwI | GGATC | 7 cut(s) | 92, 249, 320, 1115, 1344, 1349, 1561 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1130, 1205 |
| AoxI | GGCC | 1 cut(s) | 510 |
| ApeKI | GCWGC | 8 cut(s) | 194, 440, 862, 1205, 1274, 1399, 1439, 1483 |
| ApoI | RAATTY | 1 cut(s) | 47 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 696, 728, 792, 824, 1079, 1111 |
| AspLEI | GCGC | 1 cut(s) | 1657 |
| AspS9I | GGNCC | 2 cut(s) | 690, 786 |
| AsuC2I | CCSGG | 1 cut(s) | 965 |
| AsuHPI | GGTGA | 3 cut(s) | 787, 848, 1245 |
| AvaII | GGWCC | 2 cut(s) | 690, 786 |
| BaeGI | GKGCMC | 1 cut(s) | 389 |
| BalI | TGGCCA | 1 cut(s) | 512 |
| BanII | GRGCYC | 1 cut(s) | 1267 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 913, 945 |
| BauI | CACGAG | 1 cut(s) | 112 |
| Bbv12I | GWGCWC | 1 cut(s) | 1267 |
| BbvCI | CCTCAGC | 1 cut(s) | 1179 |
| BbvI | GCAGC | 8 cut(s) | 206, 452, 874, 1192, 1261, 1411, 1426, 1495 |
| BccI | CCATC | 9 cut(s) | 232, 293, 502, 537, 827, 964, 1127, 1612, 1742 |
| BciT130I | CCWGG | 2 cut(s) | 177, 1334 |
| BclI | TGATCA | 1 cut(s) | 1552 |
| BcnI | CCSGG | 1 cut(s) | 965 |
| BcoDI | GTCTC | 1 cut(s) | 339 |
| BfaI | CTAG | 1 cut(s) | 1571 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 969 |
| Bme1390I | CCNGG | 3 cut(s) | 177, 965, 1334 |
| Bme18I | GGWCC | 2 cut(s) | 690, 786 |
| BmgT120I | GGNCC | 2 cut(s) | 690, 786 |
| BmrFI | CCNGG | 3 cut(s) | 177, 965, 1334 |
| BmrI | ACTGGG | 1 cut(s) | 738 |
| BmsI | GCATC | 6 cut(s) | 136, 998, 1073, 1192, 1356, 1521 |
| BmuI | ACTGGG | 1 cut(s) | 738 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 137, 169, 1644, 1676 |
| BpmI | CTGGAG | 3 cut(s) | 425, 1176, 1233 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1179 |
| BpuEI | CTTGAG | 1 cut(s) | 1544 |
| BpuMI | CCSGG | 1 cut(s) | 965 |
| BsaJI | CCNNGG | 3 cut(s) | 175, 375, 471 |
| Bse1I | ACTGG | 5 cut(s) | 320, 744, 1077, 1193, 1597 |
| Bse3DI | GCAATG | 2 cut(s) | 865, 1284 |
| BseBI | CCWGG | 2 cut(s) | 177, 1334 |
| BseDI | CCNNGG | 3 cut(s) | 175, 375, 471 |
| BseGI | GGATG | 8 cut(s) | 304, 370, 1064, 1100, 1159, 1604, 1726, 1753 |
| BseMI | GCAATG | 2 cut(s) | 865, 1284 |
| BseMII | CTCAG | 4 cut(s) | 116, 230, 1193, 1458 |
| BseNI | ACTGG | 5 cut(s) | 320, 744, 1077, 1193, 1597 |
| BseRI | GAGGAG | 5 cut(s) | 648, 744, 1408, 1602, 1665 |
| BseSI | GKGCMC | 1 cut(s) | 389 |
| BseXI | GCAGC | 8 cut(s) | 206, 452, 874, 1192, 1261, 1411, 1426, 1495 |
| BseYI | CCCAGC | 1 cut(s) | 1172 |
| BsgI | GTGCAG | 2 cut(s) | 213, 881 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1667 |
| BshFI | GGCC | 1 cut(s) | 512 |
| BsiEI | CGRYCG | 1 cut(s) | 1667 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1267 |
| BsiSI | CCGG | 1 cut(s) | 965 |
| BslFI | GGGAC | 1 cut(s) | 1155 |
| BsmAI | GTCTC | 1 cut(s) | 339 |
| BsmFI | GGGAC | 1 cut(s) | 1155 |
| BsmI | GAATGC | 1 cut(s) | 949 |
| BsnI | GGCC | 1 cut(s) | 512 |
| Bsp1286I | GDGCHC | 2 cut(s) | 389, 1267 |
| Bsp19I | CCATGG | 2 cut(s) | 375, 471 |
| BspACI | CCGC | 4 cut(s) | 421, 1011, 1291, 1449 |
| BspANI | GGCC | 1 cut(s) | 512 |
| BspCNI | CTCAG | 4 cut(s) | 115, 229, 1192, 1459 |
| BspPI | GGATC | 7 cut(s) | 92, 249, 320, 1115, 1344, 1349, 1561 |
| BsrDI | GCAATG | 2 cut(s) | 865, 1284 |
| BsrI | ACTGG | 5 cut(s) | 320, 744, 1077, 1193, 1597 |
| BssECI | CCNNGG | 3 cut(s) | 175, 375, 471 |
| BssSI | CACGAG | 1 cut(s) | 112 |
| BssT1I | CCWWGG | 2 cut(s) | 375, 471 |
| Bst2BI | CACGAG | 1 cut(s) | 112 |
| Bst2UI | CCWGG | 2 cut(s) | 177, 1334 |
| Bst4CI | ACNGT | 4 cut(s) | 859, 1543, 1625, 1680 |
| Bst6I | CTCTTC | 6 cut(s) | 426, 699, 795, 1401, 1487, 1620 |
| BstC8I | GCNNGC | 3 cut(s) | 55, 192, 1013 |
| BstDEI | CTNAG | 5 cut(s) | 102, 183, 216, 1179, 1467 |
| BstDSI | CCRYGG | 2 cut(s) | 375, 471 |
| BstEII | GGTNACC | 1 cut(s) | 775 |
| BstF5I | GGATG | 8 cut(s) | 304, 370, 1064, 1100, 1159, 1604, 1726, 1753 |
| BstHHI | GCGC | 1 cut(s) | 1657 |
| BstMAI | GTCTC | 1 cut(s) | 339 |
| BstMCI | CGRYCG | 1 cut(s) | 1667 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 203, 969, 1145, 1271, 1445, 1448, 1517 |
| BstNI | CCWGG | 2 cut(s) | 177, 1334 |
| BstNSI | RCATGY | 1 cut(s) | 1005 |
| BstPI | GGTNACC | 1 cut(s) | 775 |
| BstSCI | CCNGG | 3 cut(s) | 175, 963, 1332 |
| BstSLI | GKGCMC | 1 cut(s) | 389 |
| BstV1I | GCAGC | 8 cut(s) | 206, 452, 874, 1192, 1261, 1411, 1426, 1495 |
| BstX2I | RGATCY | 2 cut(s) | 1120, 1566 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 382 |
| BstYI | RGATCY | 2 cut(s) | 1120, 1566 |
| BsuRI | GGCC | 1 cut(s) | 512 |
| BtgI | CCRYGG | 2 cut(s) | 375, 471 |
| BtsCI | GGATG | 8 cut(s) | 304, 370, 1064, 1100, 1159, 1604, 1726, 1753 |
| BtsI | GCAGTG | 1 cut(s) | 266 |
| BtsIMutI | CAGTG | 6 cut(s) | 266, 281, 426, 684, 864, 906 |
| Cac8I | GCNNGC | 3 cut(s) | 55, 192, 1013 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1130, 1205 |
| CfoI | GCGC | 1 cut(s) | 1657 |
| Cfr13I | GGNCC | 2 cut(s) | 690, 786 |
| Csp6I | GTAC | 1 cut(s) | 418 |
| CviQI | GTAC | 1 cut(s) | 418 |
| DdeI | CTNAG | 5 cut(s) | 102, 183, 216, 1179, 1467 |
| DrdI | GACNNNNNNGTC | 3 cut(s) | 688, 784, 1077 |
| DseDI | GACNNNNNNGTC | 3 cut(s) | 688, 784, 1077 |
| EaeI | YGGCCR | 1 cut(s) | 510 |
| Eam1104I | CTCTTC | 6 cut(s) | 426, 699, 795, 1401, 1487, 1620 |
| EarI | CTCTTC | 6 cut(s) | 426, 699, 795, 1401, 1487, 1620 |
| Ecl136II | GAGCTC | 1 cut(s) | 1265 |
| Eco130I | CCWWGG | 2 cut(s) | 375, 471 |
| Eco24I | GRGCYC | 1 cut(s) | 1267 |
| Eco47I | GGWCC | 2 cut(s) | 690, 786 |
| Eco53kI | GAGCTC | 1 cut(s) | 1265 |
| Eco57I | CTGAAG | 5 cut(s) | 59, 254, 450, 915, 1464 |
| Eco91I | GGTNACC | 1 cut(s) | 775 |
| EcoICRI | GAGCTC | 1 cut(s) | 1265 |
| EcoO65I | GGTNACC | 1 cut(s) | 775 |
| EcoRII | CCWGG | 2 cut(s) | 175, 1332 |
| EcoT14I | CCWWGG | 2 cut(s) | 375, 471 |
| EcoT22I | ATGCAT | 1 cut(s) | 1066 |
| EcoT38I | GRGCYC | 1 cut(s) | 1267 |
| ErhI | CCWWGG | 2 cut(s) | 375, 471 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 60, 92, 123, 155, 1277, 1309 |
| FaqI | GGGAC | 1 cut(s) | 1155 |
| FauI | CCCGC | 1 cut(s) | 1004 |
| FbaI | TGATCA | 1 cut(s) | 1552 |
| FblI | GTMKAC | 2 cut(s) | 477, 922 |
| FokI | GGATG | 8 cut(s) | 311, 357, 1051, 1087, 1166, 1591, 1733, 1760 |
| FriOI | GRGCYC | 1 cut(s) | 1267 |
| FspBI | CTAG | 1 cut(s) | 1571 |
| GlaI | GCGC | 1 cut(s) | 1656 |
| GsaI | CCCAGC | 1 cut(s) | 1176 |
| GsuI | CTGGAG | 3 cut(s) | 425, 1176, 1233 |
| HaeIII | GGCC | 1 cut(s) | 512 |
| HapII | CCGG | 1 cut(s) | 965 |
| HhaI | GCGC | 1 cut(s) | 1657 |
| Hin6I | GCGC | 1 cut(s) | 1655 |
| HinP1I | GCGC | 1 cut(s) | 1655 |
| HincII | GTYRAC | 1 cut(s) | 1098 |
| HindII | GTYRAC | 1 cut(s) | 1098 |
| HindIII | AAGCTT | 2 cut(s) | 927, 1090 |
| HpaII | CCGG | 1 cut(s) | 965 |
| HphI | GGTGA | 3 cut(s) | 787, 848, 1245 |
| Hpy166II | GTNNAC | 4 cut(s) | 317, 478, 923, 1098 |
| Hpy188III | TCNNGA | 7 cut(s) | 209, 347, 647, 1068, 1124, 1212, 1710 |
| Hpy8I | GTNNAC | 4 cut(s) | 317, 478, 923, 1098 |
| HpyAV | CCTTC | 8 cut(s) | 177, 577, 703, 708, 799, 804, 1405, 1751 |
| HpyCH4III | ACNGT | 4 cut(s) | 859, 1543, 1625, 1680 |
| HpyCH4IV | ACGT | 1 cut(s) | 254 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 203, 969, 1145, 1271, 1445, 1448, 1517 |
| HpyF3I | CTNAG | 5 cut(s) | 102, 183, 216, 1179, 1467 |
| HpySE526I | ACGT | 1 cut(s) | 254 |
| HspAI | GCGC | 1 cut(s) | 1655 |
| Ksp22I | TGATCA | 1 cut(s) | 1552 |
| LmnI | GCTCC | 1 cut(s) | 1652 |
| Lsp1109I | GCAGC | 8 cut(s) | 206, 452, 874, 1192, 1261, 1411, 1426, 1495 |
| LweI | GCATC | 6 cut(s) | 136, 998, 1073, 1192, 1356, 1521 |
| MaeI | CTAG | 1 cut(s) | 1571 |
| MaeII | ACGT | 1 cut(s) | 254 |
| MaeIII | GTNAC | 7 cut(s) | 116, 135, 250, 679, 775, 1022, 1195 |
| MflI | RGATCY | 2 cut(s) | 1120, 1566 |
| MhlI | GDGCHC | 2 cut(s) | 389, 1267 |
| MlsI | TGGCCA | 1 cut(s) | 512 |
| MluCI | AATT | 7 cut(s) | 47, 63, 563, 615, 878, 1515, 1734 |
| MluNI | TGGCCA | 1 cut(s) | 512 |
| MlyI | GAGTC | 3 cut(s) | 1019, 1639, 1739 |
| Mox20I | TGGCCA | 1 cut(s) | 512 |
| Mph1103I | ATGCAT | 1 cut(s) | 1066 |
| MscI | TGGCCA | 1 cut(s) | 512 |
| MseI | TTAA | 4 cut(s) | 45, 141, 618, 1589 |
| MslI | CAYNNNNRTG | 3 cut(s) | 297, 1006, 1457 |
| Msp20I | TGGCCA | 1 cut(s) | 512 |
| MspA1I | CMGCKG | 1 cut(s) | 443 |
| MspI | CCGG | 1 cut(s) | 965 |
| MspR9I | CCNGG | 3 cut(s) | 177, 965, 1334 |
| Mva1269I | GAATGC | 1 cut(s) | 949 |
| MvaI | CCWGG | 2 cut(s) | 177, 1334 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 203, 969, 1145, 1271, 1445, 1448, 1517 |
| NciI | CCSGG | 1 cut(s) | 965 |
| NcoI | CCATGG | 2 cut(s) | 375, 471 |
| NmuCI | GTSAC | 6 cut(s) | 116, 135, 250, 679, 775, 1022 |
| NsiI | ATGCAT | 1 cut(s) | 1066 |
| NspI | RCATGY | 1 cut(s) | 1005 |
| PctI | GAATGC | 1 cut(s) | 949 |
| PfeI | GAWTC | 7 cut(s) | 212, 271, 568, 643, 739, 1127, 1596 |
| PfoI | TCCNGGA | 1 cut(s) | 1332 |
| Ple19I | CGATCG | 1 cut(s) | 1667 |
| PleI | GAGTC | 3 cut(s) | 1019, 1638, 1738 |
| PpsI | GAGTC | 3 cut(s) | 1019, 1638, 1738 |
| PsiI | TTATAA | 1 cut(s) | 1694 |
| Psp124BI | GAGCTC | 1 cut(s) | 1267 |
| Psp6I | CCWGG | 2 cut(s) | 175, 1332 |
| PspEI | GGTNACC | 1 cut(s) | 775 |
| PspFI | CCCAGC | 1 cut(s) | 1172 |
| PspGI | CCWGG | 2 cut(s) | 175, 1332 |
| PspPI | GGNCC | 2 cut(s) | 690, 786 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1130, 1205 |
| PsuI | RGATCY | 2 cut(s) | 1120, 1566 |
| PvuI | CGATCG | 1 cut(s) | 1667 |
| PvuII | CAGCTG | 1 cut(s) | 443 |
| RsaI | GTAC | 1 cut(s) | 419 |
| RsaNI | GTAC | 1 cut(s) | 418 |
| RseI | CAYNNNNRTG | 3 cut(s) | 297, 1006, 1457 |
| SacI | GAGCTC | 1 cut(s) | 1267 |
| SaqAI | TTAA | 4 cut(s) | 45, 141, 618, 1589 |
| Sau96I | GGNCC | 2 cut(s) | 690, 786 |
| SchI | GAGTC | 3 cut(s) | 1019, 1639, 1739 |
| ScrFI | CCNGG | 3 cut(s) | 177, 965, 1334 |
| SduI | GDGCHC | 2 cut(s) | 389, 1267 |
| SfaNI | GCATC | 6 cut(s) | 136, 998, 1073, 1192, 1356, 1521 |
| SinI | GGWCC | 2 cut(s) | 690, 786 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 297, 1006, 1457 |
| SmlI | CTYRAG | 1 cut(s) | 1523 |
| SmoI | CTYRAG | 1 cut(s) | 1523 |
| Sse9I | AATT | 7 cut(s) | 47, 63, 563, 615, 878, 1515, 1734 |
| SsiI | CCGC | 4 cut(s) | 421, 1011, 1291, 1449 |
| SspI | AATATT | 2 cut(s) | 496, 1706 |
| SspMI | CTAG | 1 cut(s) | 1571 |
| SstI | GAGCTC | 1 cut(s) | 1267 |
| StyD4I | CCNGG | 3 cut(s) | 175, 963, 1332 |
| StyI | CCWWGG | 2 cut(s) | 375, 471 |
| TaaI | ACNGT | 4 cut(s) | 859, 1543, 1625, 1680 |
| TaiI | ACGT | 1 cut(s) | 257 |
| TaqI | TCGA | 4 cut(s) | 210, 581, 1006, 1513 |
| TaqII | GACCGA | 1 cut(s) | 1623 |
| TasI | AATT | 7 cut(s) | 47, 63, 563, 615, 878, 1515, 1734 |
| TauI | GCSGC | 2 cut(s) | 1293, 1451 |
| TfiI | GAWTC | 7 cut(s) | 212, 271, 568, 643, 739, 1127, 1596 |
| Tru1I | TTAA | 4 cut(s) | 45, 141, 618, 1589 |
| Tru9I | TTAA | 4 cut(s) | 45, 141, 618, 1589 |
| TscAI | CASTG | 6 cut(s) | 266, 288, 433, 684, 864, 913 |
| TseFI | GTSAC | 6 cut(s) | 116, 135, 250, 679, 775, 1022 |
| TseI | GCWGC | 8 cut(s) | 194, 440, 862, 1205, 1274, 1399, 1439, 1483 |
| Tsp45I | GTSAC | 6 cut(s) | 116, 135, 250, 679, 775, 1022 |
| TspGWI | ACGGA | 2 cut(s) | 1259, 1504 |
| TspRI | CASTG | 6 cut(s) | 266, 288, 433, 684, 864, 913 |
| VpaK11BI | GGWCC | 2 cut(s) | 690, 786 |
| XapI | RAATTY | 1 cut(s) | 47 |
| XceI | RCATGY | 1 cut(s) | 1005 |
| XmiI | GTMKAC | 2 cut(s) | 477, 922 |
| XspI | CTAG | 1 cut(s) | 1571 |
| Zsp2I | ATGCAT | 1 cut(s) | 1066 |