Rh5AG098000

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0006276
Physical Location & Seq
Reverse (-)
9101763 .. 9105844
4082 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG098000.1

Sequence Viewer

Length: 1677 bp
ATGATTGCCACCGAAACAACCATGTTATCGGGCAGCAAGCTGAAGATCAAATTTTCCTGCAAAAGAATAGAAGTTGAGCCCGGGAAAATAGGGGAATCCGATGACGGGAAAGTGTCGCGTGACTTTGGGAATACAGTGTCAGCCAGGGGTTTGAGCTCTGTTGCACAAACTTCTCTCCCGGGTGGTAAGAAGAGGGGACCCTCAGGGGATATTGAGGCTCCGAGAGAGAAGAAGCTGAAGATGGATCGTAAAGTGAAGGGTCAGTGCTCAACAATTCTGAATACACTGATTTCTCATAAGGACTCTTGGGCCTTCAGAAAACCAGTTGATCCTGTTGAGCTACAAATTCCTGATTATTTTGATGTCATCTCTTCTCCCATGGATTTGGGAACGATCAAATCAAAGCTGGACAGAAATTTGTATTTTGGCGCTGGAGAGTTCGCAGCTGATGTCAGATTGACCTTTTCTAATGCCATGCTCTATAATCCCCCGGGCAATCCTTTTCATCAGATGGCAAAAGACCTAAATACAAAGTTTGAGATGAAATGGAGACAAGTGGATGTGAAGTGGAGTCAGGGAAGCTCGAAGGTTGATATGGGGAAAAATTCGTGTGGGCAAGTTAAGAAAATAACTGAAATAACTGATACGAGACTGAATTCCCATAAAACTACTCTGTTTCAGAGTGTATCAGTGTCCAAAAGCCCAGTCCTCAGCAGAGAGAATGTTGGAGCTGCTTTTGGTGCAAGTGATGGTGAGGTAGAGCTTGCCAAAACAGTCAAGAACTCCACTCCAAAAATGTCGGGAAAGAACTTCAATAGAGGCTGCGATAGTGGTGGCAGACAATCTTCTGGCTCTAGAAGTGCAAAGCAGCCACCAAGCTTGGTTGGTAGCAAATGTGGAACATGTGGCAACATTACATGCCGATGCAGCCTGCGCACTGACTATCGCTCCTCAAGTGACATATCTTCTGAGAGGTCTGTAGGCAGAGAACAAAATCATCATTTGTCTATTGCCAATGTATCCGGACTGGATTGTCAAGCAAAAGGCTCTTCTACATCCCATATGAGCAAGTCAGATCCAGAGTCTGATGGGGCCGTAAGTGCTCTGGATGAGGAAACCATATGTCCCAGTTCTCAGCTTACAACCCCAGTCACAGATGCTGCTTCTGGAGAAGAATGGAGCACACCTATTTTTAGTGTTCCACTATCACCAAAAAAGGCTCTCCGTGCTGCAATGCTGAAGAGTCGCTTTGCGGATACTATTTTGAAAGCTCAACAGAAAAGTCTACTTGATCAAGGTAATAGAAGTGATCCACTGAAGATGCAACAAGAAAAGGCGAGATTAGAGCGGAAGCAGCGTGAAGAGAAGGCAAGGATTGAAGCCGAAATAAGAGCTGCAGAAGCTGCCGCACAAAGGCAGGCTGAGCTTGAATTGAAGGAGCGACAAGAAAGAGAGAGAGAAGAAGCTCGTATTGCCCTTGAAAAGATGGAGAGGACTGTTGTGTTTGAGCAGAATTGCTATATCTTAGAGGAACTTAAAAGATTAGCCGGATATAATGGTGGCTCTTGGGGATCACACTTCCGTTCACCACTGGAGCGACTTGGTTTATTTATCAAGGAAGAGTATACAGTAGATGTTGATGAATTGGAGGAAGGGGAGGAAGGGGAGATTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromodomain

Protein Analysis

558

Amino Acids

61.47

Weight (kDa)

8.68

Isoelectric Point (pI)

43.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 89 - 173 9.5e-21 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1032
Acc16I TGCGCA 1 cut(s) 935
AccBSI CCGCTC 1 cut(s) 1348
AccI GTMKAC 2 cut(s) 1285, 1625
AccII CGCG 1 cut(s) 118
AccIII TCCGGA 1 cut(s) 1022
AciI CCGC 3 cut(s) 1253, 1348, 1407
AclWI GGATC 5 cut(s) 252, 323, 1070, 1304, 1579
AcsI RAATTY 5 cut(s) 50, 345, 415, 604, 655
AcuI CTGAAG 5 cut(s) 62, 257, 298, 1259, 1337
AfiI CCNNNNNNNGG 2 cut(s) 105, 1413
AflIII ACRYGT 1 cut(s) 902
AgsI TTSAA 6 cut(s) 814, 1267, 1379, 1430, 1435, 1481
AjnI CCWGG 1 cut(s) 143
Alw21I GWGCWC 4 cut(s) 158, 269, 1105, 1184
Alw26I GTCTC 2 cut(s) 544, 643
AlwI GGATC 5 cut(s) 252, 323, 1070, 1304, 1579
AlwNI CAGNNNCTG 3 cut(s) 1085, 1160, 1403
Ama87I CYCGRG 3 cut(s) 80, 178, 490
Aor13HI TCCGGA 1 cut(s) 1022
AoxI GGCC 2 cut(s) 309, 1092
ApoI RAATTY 5 cut(s) 50, 345, 415, 604, 655
ArsI GACNNNNNNTTYG 2 cut(s) 690, 722
AspLEI GCGC 2 cut(s) 431, 936
AspS9I GGNCC 3 cut(s) 197, 309, 1092
AsuC2I CCSGG 6 cut(s) 81, 82, 179, 180, 491, 492
AsuHPI GGTGA 3 cut(s) 764, 1200, 1578
AvaI CYCGRG 3 cut(s) 80, 178, 490
AvaII GGWCC 1 cut(s) 197
AxyI CCTNAGG 1 cut(s) 202
BanII GRGCYC 2 cut(s) 81, 158
Bbv12I GWGCWC 4 cut(s) 158, 269, 1105, 1184
BbvCI CCTCAGC 1 cut(s) 710
BccI CCATC 5 cut(s) 235, 505, 743, 1082, 1480
BceAI ACGGC 1 cut(s) 1079
BciT130I CCWGG 1 cut(s) 145
BciVI GTATCC 2 cut(s) 1030, 1249
BclI TGATCA 1 cut(s) 1291
BcnI CCSGG 6 cut(s) 81, 82, 179, 180, 491, 492
BcoDI GTCTC 2 cut(s) 544, 643
BfaI CTAG 1 cut(s) 855
BfmI CTRYAG 2 cut(s) 978, 1395
BfoI RGCGCY 1 cut(s) 432
BfuI GTATCC 2 cut(s) 1030, 1249
BlpI GCTNAGC 1 cut(s) 1422
Bme1390I CCNGG 7 cut(s) 81, 82, 145, 179, 180, 491, 492
Bme18I GGWCC 1 cut(s) 197
BmeT110I CYCGRG 3 cut(s) 80, 178, 490
BmgT120I GGNCC 3 cut(s) 197, 309, 1092
BmiI GGNNCC 4 cut(s) 198, 199, 219, 1093
BmrFI CCNGG 7 cut(s) 81, 82, 145, 179, 180, 491, 492
BmrI ACTGGG 3 cut(s) 698, 1122, 1142
BmsI GCATC 3 cut(s) 914, 1147, 1311
BmuI ACTGGG 3 cut(s) 698, 1122, 1142
BpmI CTGGAG 3 cut(s) 453, 1188, 1613
Bpu10I CCTNAGC 1 cut(s) 710
Bpu1102I GCTNAGC 1 cut(s) 1422
BpuEI CTTGAG 1 cut(s) 937
BpuMI CCSGG 6 cut(s) 81, 82, 179, 180, 491, 492
BsaJI CCNNGG 6 cut(s) 80, 144, 178, 378, 489, 490
BsaWI WCCGGW 1 cut(s) 1022
BsaXI ACNNNNNCTCC 3 cut(s) 932, 962, 1658
Bsc4I CCNNNNNNNGG 2 cut(s) 105, 1413
Bse1I ACTGG 6 cut(s) 323, 704, 1032, 1128, 1148, 1596
Bse21I CCTNAGG 1 cut(s) 202
Bse3DI GCAATG 1 cut(s) 1239
BseAI TCCGGA 1 cut(s) 1022
BseBI CCWGG 1 cut(s) 145
BseDI CCNNGG 6 cut(s) 80, 144, 178, 378, 489, 490
BseGI GGATG 3 cut(s) 565, 1055, 1114
BseLI CCNNNNNNNGG 2 cut(s) 105, 1413
BseMI GCAATG 1 cut(s) 1239
BseMII CTCAG 5 cut(s) 216, 724, 960, 1148, 1413
BseNI ACTGG 6 cut(s) 323, 704, 1032, 1128, 1148, 1596
BseRI GAGGAG 1 cut(s) 940
Bsh1236I CGCG 1 cut(s) 118
BshFI GGCC 2 cut(s) 311, 1094
BsiHKAI GWGCWC 4 cut(s) 158, 269, 1105, 1184
BsiHKCI CYCGRG 3 cut(s) 80, 178, 490
BsiSI CCGG 5 cut(s) 81, 179, 491, 1023, 1548
BslFI GGGAC 2 cut(s) 210, 1110
BslI CCNNNNNNNGG 2 cut(s) 105, 1413
BsmAI GTCTC 2 cut(s) 544, 643
BsmFI GGGAC 2 cut(s) 210, 1110
BsnI GGCC 2 cut(s) 311, 1094
BsoBI CYCGRG 3 cut(s) 80, 178, 490
Bsp1286I GDGCHC 5 cut(s) 81, 158, 269, 1105, 1184
Bsp13I TCCGGA 1 cut(s) 1022
Bsp143I GATC 8 cut(s) 45, 244, 328, 393, 1075, 1291, 1309, 1571
Bsp1720I GCTNAGC 1 cut(s) 1422
Bsp19I CCATGG 1 cut(s) 378
BspACI CCGC 3 cut(s) 1253, 1348, 1407
BspANI GGCC 2 cut(s) 311, 1094
BspCNI CTCAG 5 cut(s) 215, 723, 961, 1147, 1414
BspEI TCCGGA 1 cut(s) 1022
BspFNI CGCG 1 cut(s) 118
BspLI GGNNCC 4 cut(s) 198, 199, 219, 1093
BspMAI CTGCAG 1 cut(s) 1399
BspPI GGATC 5 cut(s) 252, 323, 1070, 1304, 1579
BspQI GCTCTTC 1 cut(s) 1054
BsrBI CCGCTC 1 cut(s) 1348
BsrDI GCAATG 1 cut(s) 1239
BsrI ACTGG 6 cut(s) 323, 704, 1032, 1128, 1148, 1596
BssECI CCNNGG 6 cut(s) 80, 144, 178, 378, 489, 490
BssMI GATC 8 cut(s) 45, 244, 328, 393, 1075, 1291, 1309, 1571
BssNAI GTATAC 1 cut(s) 1626
BssT1I CCWWGG 1 cut(s) 378
Bst1107I GTATAC 1 cut(s) 1626
Bst2UI CCWGG 1 cut(s) 145
Bst4CI ACNGT 4 cut(s) 136, 775, 1498, 1630
Bst6I CTCTTC 6 cut(s) 185, 376, 1054, 1235, 1356, 1614
BstAPI GCANNNNNTGC 1 cut(s) 1403
BstC8I GCNNGC 4 cut(s) 38, 765, 932, 1419
BstDEI CTNAG 6 cut(s) 202, 710, 969, 1134, 1422, 1525
BstDSI CCRYGG 1 cut(s) 378
BstF5I GGATG 3 cut(s) 565, 1055, 1114
BstFNI CGCG 1 cut(s) 118
BstH2I RGCGCY 1 cut(s) 432
BstHHI GCGC 2 cut(s) 431, 936
BstKTI GATC 8 cut(s) 48, 247, 331, 396, 1078, 1294, 1312, 1574
BstMAI GTCTC 2 cut(s) 544, 643
BstMBI GATC 8 cut(s) 45, 244, 328, 393, 1075, 1291, 1309, 1571
BstNI CCWGG 1 cut(s) 145
BstNSI RCATGY 2 cut(s) 906, 921
BstSCI CCNGG 7 cut(s) 79, 80, 143, 177, 178, 489, 490
BstSFI CTRYAG 2 cut(s) 978, 1395
BstUI CGCG 1 cut(s) 118
BstX2I RGATCY 1 cut(s) 1075
BstXI CCANNNNNNTGG 1 cut(s) 385
BstYI RGATCY 1 cut(s) 1075
BstZ17I GTATAC 1 cut(s) 1626
Bsu36I CCTNAGG 1 cut(s) 202
BsuI GTATCC 2 cut(s) 1030, 1249
BsuRI GGCC 2 cut(s) 311, 1094
BtgI CCRYGG 1 cut(s) 378
BtsCI GGATG 3 cut(s) 565, 1055, 1114
BtsIMutI CAGTG 7 cut(s) 141, 269, 284, 696, 936, 1313, 1589
Cac8I GCNNGC 4 cut(s) 38, 765, 932, 1419
CaiI CAGNNNCTG 3 cut(s) 1085, 1160, 1403
CfoI GCGC 2 cut(s) 431, 936
Cfr13I GGNCC 3 cut(s) 197, 309, 1092
Cfr9I CCCGGG 3 cut(s) 80, 178, 490
CspCI CAANNNNNGTGG 2 cut(s) 861, 896
CviAII CATG 5 cut(s) 22, 379, 475, 903, 918
DdeI CTNAG 6 cut(s) 202, 710, 969, 1134, 1422, 1525
DpnI GATC 8 cut(s) 47, 246, 330, 395, 1077, 1293, 1311, 1573
DpnII GATC 8 cut(s) 45, 244, 328, 393, 1075, 1291, 1309, 1571
DrdI GACNNNNNNGTC 1 cut(s) 1032
DseDI GACNNNNNNGTC 1 cut(s) 1032
Eam1104I CTCTTC 6 cut(s) 185, 376, 1054, 1235, 1356, 1614
EarI CTCTTC 6 cut(s) 185, 376, 1054, 1235, 1356, 1614
Ecl136II GAGCTC 1 cut(s) 156
Eco130I CCWWGG 1 cut(s) 378
Eco24I GRGCYC 2 cut(s) 81, 158
Eco47I GGWCC 1 cut(s) 197
Eco53kI GAGCTC 1 cut(s) 156
Eco57I CTGAAG 5 cut(s) 62, 257, 298, 1259, 1337
Eco81I CCTNAGG 1 cut(s) 202
Eco88I CYCGRG 3 cut(s) 80, 178, 490
EcoICRI GAGCTC 1 cut(s) 156
EcoO109I RGGNCCY 1 cut(s) 197
EcoRI GAATTC 1 cut(s) 655
EcoRII CCWGG 1 cut(s) 143
EcoT14I CCWWGG 1 cut(s) 378
EcoT38I GRGCYC 2 cut(s) 81, 158
ErhI CCWWGG 1 cut(s) 378
FaeI CATG 5 cut(s) 25, 382, 478, 906, 921
FalI AAGNNNNNCTT 2 cut(s) 1232, 1264
FaqI GGGAC 2 cut(s) 210, 1110
FatI CATG 5 cut(s) 21, 378, 474, 902, 917
FauNDI CATATG 2 cut(s) 1062, 1121
FbaI TGATCA 1 cut(s) 1291
FblI GTMKAC 2 cut(s) 1285, 1625
FokI GGATG 3 cut(s) 572, 1042, 1121
FriOI GRGCYC 2 cut(s) 81, 158
FspBI CTAG 1 cut(s) 855
FspI TGCGCA 1 cut(s) 935
GlaI GCGC 2 cut(s) 430, 935
GsuI CTGGAG 3 cut(s) 453, 1188, 1613
HaeII RGCGCY 1 cut(s) 432
HaeIII GGCC 2 cut(s) 311, 1094
HapII CCGG 5 cut(s) 81, 179, 491, 1023, 1548
HhaI GCGC 2 cut(s) 431, 936
Hin1II CATG 5 cut(s) 25, 382, 478, 906, 921
Hin6I GCGC 2 cut(s) 429, 934
HinP1I GCGC 2 cut(s) 429, 934
HindIII AAGCTT 1 cut(s) 877
HinfI GANTC 5 cut(s) 95, 302, 571, 1082, 1243
HpaII CCGG 5 cut(s) 81, 179, 491, 1023, 1548
HphI GGTGA 3 cut(s) 764, 1200, 1578
Hpy166II GTNNAC 3 cut(s) 1286, 1586, 1626
Hpy188III TCNNGA 8 cut(s) 350, 778, 801, 855, 1023, 1079, 1106, 1167
Hpy8I GTNNAC 3 cut(s) 1286, 1586, 1626
HpyAV CCTTC 7 cut(s) 250, 322, 580, 1360, 1429, 1646, 1655
HpyCH4III ACNGT 4 cut(s) 136, 775, 1498, 1630
HpyCH4V TGCA 8 cut(s) 60, 164, 743, 863, 927, 1232, 1324, 1397
HpyF3I CTNAG 6 cut(s) 202, 710, 969, 1134, 1422, 1525
Hsp92II CATG 5 cut(s) 25, 382, 478, 906, 921
HspAI GCGC 2 cut(s) 429, 934
KflI GGGWCCC 1 cut(s) 197
Kpn2I TCCGGA 1 cut(s) 1022
Ksp22I TGATCA 1 cut(s) 1291
Kzo9I GATC 8 cut(s) 45, 244, 328, 393, 1075, 1291, 1309, 1571
LguI GCTCTTC 1 cut(s) 1054
LmnI GCTCC 6 cut(s) 223, 728, 953, 1179, 1438, 1594
LweI GCATC 3 cut(s) 914, 1147, 1311
MaeI CTAG 1 cut(s) 855
MaeIII GTNAC 3 cut(s) 119, 956, 1150
MalI GATC 8 cut(s) 47, 246, 330, 395, 1077, 1293, 1311, 1573
MbiI CCGCTC 1 cut(s) 1348
MboI GATC 8 cut(s) 45, 244, 328, 393, 1075, 1291, 1309, 1571
MflI RGATCY 1 cut(s) 1075
MhlI GDGCHC 5 cut(s) 81, 158, 269, 1105, 1184
MluCI AATT 9 cut(s) 50, 273, 345, 415, 604, 655, 1430, 1513, 1643
MlyI GAGTC 4 cut(s) 296, 580, 1091, 1252
MmeI TCCRAC 1 cut(s) 706
MroI TCCGGA 1 cut(s) 1022
MseI TTAA 2 cut(s) 621, 1536
MslI CAYNNNNRTG 1 cut(s) 922
MspA1I CMGCKG 1 cut(s) 446
MspI CCGG 5 cut(s) 81, 179, 491, 1023, 1548
MspR9I CCNGG 7 cut(s) 81, 82, 145, 179, 180, 491, 492
MvaI CCWGG 1 cut(s) 145
MvnI CGCG 1 cut(s) 118
NciI CCSGG 6 cut(s) 81, 82, 179, 180, 491, 492
NcoI CCATGG 1 cut(s) 378
NdeI CATATG 2 cut(s) 1062, 1121
NdeII GATC 8 cut(s) 45, 244, 328, 393, 1075, 1291, 1309, 1571
NlaIII CATG 5 cut(s) 25, 382, 478, 906, 921
NlaIV GGNNCC 4 cut(s) 198, 199, 219, 1093
NmuCI GTSAC 3 cut(s) 119, 956, 1150
NsbI TGCGCA 1 cut(s) 935
NspI RCATGY 2 cut(s) 906, 921
PciI ACATGT 1 cut(s) 902
PciSI GCTCTTC 1 cut(s) 1054
PfeI GAWTC 1 cut(s) 95
PleI GAGTC 4 cut(s) 296, 579, 1090, 1251
PpsI GAGTC 4 cut(s) 296, 579, 1090, 1251
PpuMI RGGWCCY 1 cut(s) 197
PscI ACATGT 1 cut(s) 902
Psp124BI GAGCTC 1 cut(s) 158
Psp5II RGGWCCY 1 cut(s) 197
Psp6I CCWGG 1 cut(s) 143
PspGI CCWGG 1 cut(s) 143
PspN4I GGNNCC 4 cut(s) 198, 199, 219, 1093
PspPI GGNCC 3 cut(s) 197, 309, 1092
PspPPI RGGWCCY 1 cut(s) 197
PstI CTGCAG 1 cut(s) 1399
PstNI CAGNNNCTG 3 cut(s) 1085, 1160, 1403
PsuI RGATCY 1 cut(s) 1075
PvuII CAGCTG 1 cut(s) 446
RseI CAYNNNNRTG 1 cut(s) 922
SacI GAGCTC 1 cut(s) 158
SapI GCTCTTC 1 cut(s) 1054
SaqAI TTAA 2 cut(s) 621, 1536
Sau3AI GATC 8 cut(s) 45, 244, 328, 393, 1075, 1291, 1309, 1571
Sau96I GGNCC 3 cut(s) 197, 309, 1092
SchI GAGTC 4 cut(s) 296, 580, 1091, 1252
ScrFI CCNGG 7 cut(s) 81, 82, 145, 179, 180, 491, 492
SduI GDGCHC 5 cut(s) 81, 158, 269, 1105, 1184
SfaNI GCATC 3 cut(s) 914, 1147, 1311
SfcI CTRYAG 2 cut(s) 978, 1395
SinI GGWCC 1 cut(s) 197
SmaI CCCGGG 3 cut(s) 82, 180, 492
SmiMI CAYNNNNRTG 1 cut(s) 922
SmlI CTYRAG 1 cut(s) 952
SmoI CTYRAG 1 cut(s) 952
Sse9I AATT 9 cut(s) 50, 273, 345, 415, 604, 655, 1430, 1513, 1643
SsiI CCGC 3 cut(s) 1253, 1348, 1407
SspMI CTAG 1 cut(s) 855
SstI GAGCTC 1 cut(s) 158
StyD4I CCNGG 7 cut(s) 79, 80, 143, 177, 178, 489, 490
StyI CCWWGG 1 cut(s) 378
TaaI ACNGT 4 cut(s) 136, 775, 1498, 1630
TaqI TCGA 1 cut(s) 584
TasI AATT 9 cut(s) 50, 273, 345, 415, 604, 655, 1430, 1513, 1643
TauI GCSGC 1 cut(s) 1409
TfiI GAWTC 1 cut(s) 95
Tru1I TTAA 2 cut(s) 621, 1536
Tru9I TTAA 2 cut(s) 621, 1536
TscAI CASTG 7 cut(s) 141, 269, 291, 696, 943, 1320, 1596
TseFI GTSAC 3 cut(s) 119, 956, 1150
Tsp45I GTSAC 3 cut(s) 119, 956, 1150
TspDTI ATGAA 3 cut(s) 494, 557, 1656
TspGWI ACGGA 2 cut(s) 1214, 1571
TspMI CCCGGG 3 cut(s) 80, 178, 490
TspRI CASTG 7 cut(s) 141, 269, 291, 696, 943, 1320, 1596
VpaK11BI GGWCC 1 cut(s) 197
XapI RAATTY 5 cut(s) 50, 345, 415, 604, 655
XbaI TCTAGA 1 cut(s) 854
XceI RCATGY 2 cut(s) 906, 921
XmaI CCCGGG 3 cut(s) 80, 178, 490
XmiI GTMKAC 2 cut(s) 1285, 1625
XspI CTAG 1 cut(s) 855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.