Rh5BG095000

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0006276
Physical Location & Seq
Reverse (-)
8620210 .. 8624306
4097 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG095000.1

Sequence Viewer

Length: 1188 bp
ATGATTGCCACCGAAACAACCATGTTATCGGGCAGCAAGCTGAAGATCAAATTTTCCTGCAAAAGAATAGAAGTTGATCCAGGGAAAATAGGGCAATCCGATGACGGGAAAGTGTCGCGTGACTTTGGGAATACAGTGTCAGCCAGGGGTTTGAGCTCTGTTGCACAAACTTCTCTCCCGGGTGGTAAGAAGAGGGGACCCCCAGGGGATATTGAGGCTCCGAGAGAGAAGAAGCTGAAGATGGATCGTAAAGTGAAGGGTCAGTGTTCAACAATTCTGAATACACTGATTTCTCATAAGGACTCTTGGGCCTTCAGAAAACCAGTTGATCCTGTTGAGCTACAAATTCCTGATTATTTTGATGTCATCTCTTCTCCCATGGATTTGGGAACGATCAAATCAAAGCTGGACAGAAATTTGTATTTTGGTGCTGGAGAGTTCGCAGCTGATGTCAGATTGACCTTTTCTAATGCCATGCTCTATAATCCCCCGGGCAATCCTTTTCATCAGATGGCAAAAGACCTAAATACGAAGTTTGAGATGAAATGGAGACATCTGGATGTGAAGTGGAGTCAGGGAAGCTCGAAGGTTGATATGGGGAAAAATTCGTGTGGGCAAGTTAAGAAAATAACTGAAATAACTGATACGAGACTGAATACCCATAAATCTACTCCGTTTCAGAGTGTATCAGTGTCCAAAAGCCCAGTCCCCAGCAAAGAGAATGTTGGAGCTGCTTTTGGTGTAAGTGATGGTGAGGTAGAGCTTGCTAAAACAGTCAAGAACTCCACTCCAAAAATGTCGGGAAAGAACTTCAATAGAGGCTGCGATAGTGGTGGCAGACAATCTTCTGGCTCTAGAAGTGCAAAGCAGCCACCAAGCTTGGTTGGTAGCAAATGTGGAACGTGTGGCAACATTACATGCCGATGCAGCCTACGCACTGACTATCGCTCCTCAAGTGACATATCTTCTGAGAGGTCTGTAGGCAGAGAACAAAATCATCATTTGTCTATTGCCAATGTATCCGGACCGGATTGTCAAGCAAAAAGCTCTTCTACATCCCATATGAGCAAGTCAGATCCAGAGTCTGATGGGGCCGTAAGTGCTCTGGATGAGGAAACCATATGTCCCAGTTCTCAGCTTACAACCCCAGTCACAGATGCTGCTTCTGGAGAAGGTCAGTTTCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromodomain

Protein Analysis

395

Amino Acids

42.51

Weight (kDa)

9.16

Isoelectric Point (pI)

42.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 89 - 173 5.5e-21 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1032
AccII CGCG 1 cut(s) 118
AccIII TCCGGA 1 cut(s) 1022
AclWI GGATC 4 cut(s) 71, 252, 323, 1070
AcsI RAATTY 4 cut(s) 50, 345, 415, 604
AcuI CTGAAG 3 cut(s) 62, 257, 298
AfiI CCNNNNNNNGG 1 cut(s) 105
AflIII ACRYGT 1 cut(s) 902
AgsI TTSAA 2 cut(s) 270, 814
AjnI CCWGG 3 cut(s) 79, 143, 202
Alw21I GWGCWC 2 cut(s) 158, 1105
Alw26I GTCTC 2 cut(s) 544, 643
AlwI GGATC 4 cut(s) 71, 252, 323, 1070
AlwNI CAGNNNCTG 2 cut(s) 1085, 1160
Ama87I CYCGRG 2 cut(s) 178, 490
Aor13HI TCCGGA 1 cut(s) 1022
AoxI GGCC 2 cut(s) 309, 1092
ApeKI GCWGC 7 cut(s) 33, 443, 731, 822, 868, 927, 1160
ApoI RAATTY 4 cut(s) 50, 345, 415, 604
ArsI GACNNNNNNTTYG 2 cut(s) 690, 722
AspS9I GGNCC 4 cut(s) 197, 309, 1025, 1092
AsuC2I CCSGG 4 cut(s) 179, 180, 491, 492
AsuHPI GGTGA 1 cut(s) 764
AvaI CYCGRG 2 cut(s) 178, 490
AvaII GGWCC 2 cut(s) 197, 1025
BanII GRGCYC 1 cut(s) 158
Bbv12I GWGCWC 2 cut(s) 158, 1105
BbvI GCAGC 7 cut(s) 45, 455, 718, 809, 880, 939, 1147
BccI CCATC 4 cut(s) 235, 505, 743, 1082
BceAI ACGGC 1 cut(s) 1079
BciT130I CCWGG 3 cut(s) 81, 145, 204
BciVI GTATCC 1 cut(s) 1030
BcnI CCSGG 4 cut(s) 179, 180, 491, 492
BcoDI GTCTC 2 cut(s) 544, 643
BfaI CTAG 1 cut(s) 855
BfmI CTRYAG 1 cut(s) 978
BfuI GTATCC 1 cut(s) 1030
BisI GCNGC 7 cut(s) 34, 444, 732, 823, 869, 928, 1161
BlsI GCNGC 7 cut(s) 35, 445, 733, 824, 870, 929, 1162
Bme1390I CCNGG 7 cut(s) 81, 145, 179, 180, 204, 491, 492
Bme18I GGWCC 2 cut(s) 197, 1025
BmeT110I CYCGRG 2 cut(s) 178, 490
BmgT120I GGNCC 4 cut(s) 197, 309, 1025, 1092
BmiI GGNNCC 4 cut(s) 198, 199, 219, 1093
BmrFI CCNGG 7 cut(s) 81, 145, 179, 180, 204, 491, 492
BmrI ACTGGG 3 cut(s) 698, 1122, 1142
BmsI GCATC 2 cut(s) 914, 1147
BmuI ACTGGG 3 cut(s) 698, 1122, 1142
BpmI CTGGAG 2 cut(s) 453, 1188
BpuEI CTTGAG 1 cut(s) 937
BpuMI CCSGG 4 cut(s) 179, 180, 491, 492
BsaJI CCNNGG 8 cut(s) 80, 144, 178, 202, 203, 378, 489, 490
BsaWI WCCGGW 2 cut(s) 1022, 1027
BsaXI ACNNNNNCTCC 2 cut(s) 932, 962
Bsc4I CCNNNNNNNGG 1 cut(s) 105
Bse1I ACTGG 4 cut(s) 323, 704, 1128, 1148
BseAI TCCGGA 1 cut(s) 1022
BseBI CCWGG 3 cut(s) 81, 145, 204
BseDI CCNNGG 8 cut(s) 80, 144, 178, 202, 203, 378, 489, 490
BseGI GGATG 3 cut(s) 565, 1055, 1114
BseLI CCNNNNNNNGG 1 cut(s) 105
BseMII CTCAG 2 cut(s) 960, 1148
BseNI ACTGG 4 cut(s) 323, 704, 1128, 1148
BseRI GAGGAG 1 cut(s) 940
BseXI GCAGC 7 cut(s) 45, 455, 718, 809, 880, 939, 1147
BseYI CCCAGC 1 cut(s) 710
Bsh1236I CGCG 1 cut(s) 118
BshFI GGCC 2 cut(s) 311, 1094
BsiHKAI GWGCWC 2 cut(s) 158, 1105
BsiHKCI CYCGRG 2 cut(s) 178, 490
BsiSI CCGG 4 cut(s) 179, 491, 1023, 1028
BslFI GGGAC 3 cut(s) 210, 692, 1110
BslI CCNNNNNNNGG 1 cut(s) 105
BsmAI GTCTC 2 cut(s) 544, 643
BsmFI GGGAC 3 cut(s) 210, 692, 1110
BsnI GGCC 2 cut(s) 311, 1094
BsoBI CYCGRG 2 cut(s) 178, 490
Bsp1286I GDGCHC 2 cut(s) 158, 1105
Bsp13I TCCGGA 1 cut(s) 1022
Bsp143I GATC 6 cut(s) 45, 76, 244, 328, 393, 1075
Bsp19I CCATGG 1 cut(s) 378
BspANI GGCC 2 cut(s) 311, 1094
BspCNI CTCAG 2 cut(s) 961, 1147
BspEI TCCGGA 1 cut(s) 1022
BspFNI CGCG 1 cut(s) 118
BspLI GGNNCC 4 cut(s) 198, 199, 219, 1093
BspPI GGATC 4 cut(s) 71, 252, 323, 1070
BspQI GCTCTTC 1 cut(s) 1054
BsrI ACTGG 4 cut(s) 323, 704, 1128, 1148
BssECI CCNNGG 8 cut(s) 80, 144, 178, 202, 203, 378, 489, 490
BssMI GATC 6 cut(s) 45, 76, 244, 328, 393, 1075
BssT1I CCWWGG 1 cut(s) 378
Bst2UI CCWGG 3 cut(s) 81, 145, 204
Bst4CI ACNGT 2 cut(s) 136, 775
Bst6I CTCTTC 3 cut(s) 185, 376, 1054
BstC8I GCNNGC 2 cut(s) 38, 765
BstDEI CTNAG 3 cut(s) 969, 1134, 1185
BstDSI CCRYGG 1 cut(s) 378
BstF5I GGATG 3 cut(s) 565, 1055, 1114
BstFNI CGCG 1 cut(s) 118
BstKTI GATC 6 cut(s) 48, 79, 247, 331, 396, 1078
BstMAI GTCTC 2 cut(s) 544, 643
BstMBI GATC 6 cut(s) 45, 76, 244, 328, 393, 1075
BstMWI GCNNNNNNNGC 3 cut(s) 927, 933, 1100
BstNI CCWGG 3 cut(s) 81, 145, 204
BstNSI RCATGY 1 cut(s) 921
BstSCI CCNGG 7 cut(s) 79, 143, 177, 178, 202, 489, 490
BstSFI CTRYAG 1 cut(s) 978
BstUI CGCG 1 cut(s) 118
BstV1I GCAGC 7 cut(s) 45, 455, 718, 809, 880, 939, 1147
BstX2I RGATCY 1 cut(s) 1075
BstXI CCANNNNNNTGG 1 cut(s) 385
BstYI RGATCY 1 cut(s) 1075
BsuI GTATCC 1 cut(s) 1030
BsuRI GGCC 2 cut(s) 311, 1094
BtgI CCRYGG 1 cut(s) 378
BtsCI GGATG 3 cut(s) 565, 1055, 1114
BtsIMutI CAGTG 5 cut(s) 141, 269, 284, 696, 936
Cac8I GCNNGC 2 cut(s) 38, 765
CaiI CAGNNNCTG 2 cut(s) 1085, 1160
Cfr13I GGNCC 4 cut(s) 197, 309, 1025, 1092
Cfr9I CCCGGG 2 cut(s) 178, 490
CpoI CGGWCCG 1 cut(s) 1025
CspCI CAANNNNNGTGG 2 cut(s) 861, 896
CspI CGGWCCG 1 cut(s) 1025
CviAII CATG 4 cut(s) 22, 379, 475, 918
DdeI CTNAG 3 cut(s) 969, 1134, 1185
DpnI GATC 6 cut(s) 47, 78, 246, 330, 395, 1077
DpnII GATC 6 cut(s) 45, 76, 244, 328, 393, 1075
DrdI GACNNNNNNGTC 1 cut(s) 1032
DseDI GACNNNNNNGTC 1 cut(s) 1032
Eam1104I CTCTTC 3 cut(s) 185, 376, 1054
EarI CTCTTC 3 cut(s) 185, 376, 1054
Ecl136II GAGCTC 1 cut(s) 156
Eco130I CCWWGG 1 cut(s) 378
Eco24I GRGCYC 1 cut(s) 158
Eco47I GGWCC 2 cut(s) 197, 1025
Eco53kI GAGCTC 1 cut(s) 156
Eco57I CTGAAG 3 cut(s) 62, 257, 298
Eco88I CYCGRG 2 cut(s) 178, 490
EcoICRI GAGCTC 1 cut(s) 156
EcoO109I RGGNCCY 1 cut(s) 197
EcoRII CCWGG 3 cut(s) 79, 143, 202
EcoT14I CCWWGG 1 cut(s) 378
EcoT38I GRGCYC 1 cut(s) 158
ErhI CCWWGG 1 cut(s) 378
FaeI CATG 4 cut(s) 25, 382, 478, 921
FaqI GGGAC 3 cut(s) 210, 692, 1110
FatI CATG 4 cut(s) 21, 378, 474, 917
FauNDI CATATG 2 cut(s) 1062, 1121
Fnu4HI GCNGC 7 cut(s) 34, 444, 732, 823, 869, 928, 1161
FokI GGATG 3 cut(s) 572, 1042, 1121
FriOI GRGCYC 1 cut(s) 158
Fsp4HI GCNGC 7 cut(s) 34, 444, 732, 823, 869, 928, 1161
FspBI CTAG 1 cut(s) 855
GluI GCNGC 7 cut(s) 34, 444, 732, 823, 869, 928, 1161
GsaI CCCAGC 1 cut(s) 714
GsuI CTGGAG 2 cut(s) 453, 1188
HaeIII GGCC 2 cut(s) 311, 1094
HapII CCGG 4 cut(s) 179, 491, 1023, 1028
Hin1II CATG 4 cut(s) 25, 382, 478, 921
HindIII AAGCTT 1 cut(s) 877
HinfI GANTC 3 cut(s) 302, 571, 1082
HpaII CCGG 4 cut(s) 179, 491, 1023, 1028
HphI GGTGA 1 cut(s) 764
Hpy188III TCNNGA 9 cut(s) 350, 557, 778, 801, 855, 1023, 1079, 1106, 1167
HpyAV CCTTC 4 cut(s) 250, 322, 580, 1166
HpyCH4III ACNGT 2 cut(s) 136, 775
HpyCH4IV ACGT 1 cut(s) 902
HpyCH4V TGCA 4 cut(s) 60, 164, 863, 927
HpyF10VI GCNNNNNNNGC 3 cut(s) 927, 933, 1100
HpyF3I CTNAG 3 cut(s) 969, 1134, 1185
HpySE526I ACGT 1 cut(s) 902
Hsp92II CATG 4 cut(s) 25, 382, 478, 921
KflI GGGWCCC 1 cut(s) 197
Kpn2I TCCGGA 1 cut(s) 1022
Kzo9I GATC 6 cut(s) 45, 76, 244, 328, 393, 1075
LguI GCTCTTC 1 cut(s) 1054
LmnI GCTCC 3 cut(s) 223, 728, 953
Lsp1109I GCAGC 7 cut(s) 45, 455, 718, 809, 880, 939, 1147
LweI GCATC 2 cut(s) 914, 1147
MaeI CTAG 1 cut(s) 855
MaeII ACGT 1 cut(s) 902
MaeIII GTNAC 3 cut(s) 119, 956, 1150
MalI GATC 6 cut(s) 47, 78, 246, 330, 395, 1077
MboI GATC 6 cut(s) 45, 76, 244, 328, 393, 1075
MboII GAAGA 8 cut(s) 55, 202, 241, 250, 363, 837, 957, 1041
MflI RGATCY 1 cut(s) 1075
MhlI GDGCHC 2 cut(s) 158, 1105
MluCI AATT 5 cut(s) 50, 273, 345, 415, 604
MlyI GAGTC 3 cut(s) 296, 580, 1091
MmeI TCCRAC 1 cut(s) 706
MnlI CCTC 7 cut(s) 186, 208, 748, 812, 961, 966, 1105
MroI TCCGGA 1 cut(s) 1022
MseI TTAA 1 cut(s) 621
MslI CAYNNNNRTG 2 cut(s) 558, 922
MspA1I CMGCKG 1 cut(s) 446
MspI CCGG 4 cut(s) 179, 491, 1023, 1028
MspR9I CCNGG 7 cut(s) 81, 145, 179, 180, 204, 491, 492
MvaI CCWGG 3 cut(s) 81, 145, 204
MvnI CGCG 1 cut(s) 118
MwoI GCNNNNNNNGC 3 cut(s) 927, 933, 1100
NciI CCSGG 4 cut(s) 179, 180, 491, 492
NcoI CCATGG 1 cut(s) 378
NdeI CATATG 2 cut(s) 1062, 1121
NdeII GATC 6 cut(s) 45, 76, 244, 328, 393, 1075
NlaIII CATG 4 cut(s) 25, 382, 478, 921
NlaIV GGNNCC 4 cut(s) 198, 199, 219, 1093
NmuCI GTSAC 3 cut(s) 119, 956, 1150
NspI RCATGY 1 cut(s) 921
PasI CCCWGGG 1 cut(s) 203
PciSI GCTCTTC 1 cut(s) 1054
PkrI GCNGC 7 cut(s) 35, 445, 733, 824, 870, 929, 1162
PleI GAGTC 3 cut(s) 296, 579, 1090
PpsI GAGTC 3 cut(s) 296, 579, 1090
PpuMI RGGWCCY 1 cut(s) 197
Psp124BI GAGCTC 1 cut(s) 158
Psp5II RGGWCCY 1 cut(s) 197
Psp6I CCWGG 3 cut(s) 79, 143, 202
PspFI CCCAGC 1 cut(s) 710
PspGI CCWGG 3 cut(s) 79, 143, 202
PspN4I GGNNCC 4 cut(s) 198, 199, 219, 1093
PspPI GGNCC 4 cut(s) 197, 309, 1025, 1092
PspPPI RGGWCCY 1 cut(s) 197
PstNI CAGNNNCTG 2 cut(s) 1085, 1160
PsuI RGATCY 1 cut(s) 1075
PvuII CAGCTG 1 cut(s) 446
RseI CAYNNNNRTG 2 cut(s) 558, 922
Rsr2I CGGWCCG 1 cut(s) 1025
RsrII CGGWCCG 1 cut(s) 1025
SacI GAGCTC 1 cut(s) 158
SapI GCTCTTC 1 cut(s) 1054
SaqAI TTAA 1 cut(s) 621
SatI GCNGC 7 cut(s) 34, 444, 732, 823, 869, 928, 1161
Sau3AI GATC 6 cut(s) 45, 76, 244, 328, 393, 1075
Sau96I GGNCC 4 cut(s) 197, 309, 1025, 1092
SchI GAGTC 3 cut(s) 296, 580, 1091
ScrFI CCNGG 7 cut(s) 81, 145, 179, 180, 204, 491, 492
SduI GDGCHC 2 cut(s) 158, 1105
SfaNI GCATC 2 cut(s) 914, 1147
SfcI CTRYAG 1 cut(s) 978
SinI GGWCC 2 cut(s) 197, 1025
SmaI CCCGGG 2 cut(s) 180, 492
SmiMI CAYNNNNRTG 2 cut(s) 558, 922
SmlI CTYRAG 1 cut(s) 952
SmoI CTYRAG 1 cut(s) 952
Sse9I AATT 5 cut(s) 50, 273, 345, 415, 604
SspMI CTAG 1 cut(s) 855
SstI GAGCTC 1 cut(s) 158
StyD4I CCNGG 7 cut(s) 79, 143, 177, 178, 202, 489, 490
StyI CCWWGG 1 cut(s) 378
TaaI ACNGT 2 cut(s) 136, 775
TaiI ACGT 1 cut(s) 905
TaqI TCGA 1 cut(s) 584
TasI AATT 5 cut(s) 50, 273, 345, 415, 604
Tru1I TTAA 1 cut(s) 621
Tru9I TTAA 1 cut(s) 621
TscAI CASTG 5 cut(s) 141, 269, 291, 696, 943
TseFI GTSAC 3 cut(s) 119, 956, 1150
TseI GCWGC 7 cut(s) 33, 443, 731, 822, 868, 927, 1160
Tsp45I GTSAC 3 cut(s) 119, 956, 1150
TspDTI ATGAA 2 cut(s) 494, 557
TspGWI ACGGA 1 cut(s) 663
TspMI CCCGGG 2 cut(s) 178, 490
TspRI CASTG 5 cut(s) 141, 269, 291, 696, 943
VpaK11BI GGWCC 2 cut(s) 197, 1025
XapI RAATTY 4 cut(s) 50, 345, 415, 604
XbaI TCTAGA 1 cut(s) 854
XceI RCATGY 1 cut(s) 921
XmaI CCCGGG 2 cut(s) 178, 490
XspI CTAG 1 cut(s) 855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.