Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0006276

Physical Location & Seq

Genomic Coordinates Reverse (-)

9418367 .. 9428009

Gene Structure 9643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g09881.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGAAAACTTATGGTGAAATAAATTATCATCCTTTCTTAATACCAACACAATCTCTGGATAATATTATGCATGGGTTGCTGCAACGTTCTACGGTTCACTCGGGGCTTTCTCTCTCTCACTCTTACTTACTGCAATTGTTTTCTCTCTCATTTCTCCCTCCGACACTCTCTCTGGCTCTCTGCTCCTCCGTCGATCCGGCGGCGACTTCGTTCGCTCACTCTCGCTTCCACGCACGCCCACCTCCGCGATTCCATTTCGTCAAACACTCCACTCCTCCTCCGTTTAGTGTTCCACTTTCACCAACTAAGGCTCTTCATGCTGCAAGGCACAGGCTTCAATTTGCGCATACTTTTGTGAAATCCCAACAAAACGGTAAGAGAATTGATCCACTCAAGTTCCAACAAGATAAGGCCGTATTTGAGAGGGTGCAGCGTGAAGAGATTGCAAGGCTTGAAGCGATACTAAGAGAAAAAGATAGACAAGAAGCTCGTATTGCCCTTGAAGAGGTGGAGAGGACAGTTGTGTTTGAGGACAACTGCTATATCCTTAAAGAACTTAAACAGTTATCCGGATACTATGATCGTCGCCGTTGGCGATCGCACTTCCGATCACCTCTGGAGCGACTTGGCTTATTTCTCAAGGATGACACCCTAGAGGTTGATGAATTGGAGGAAAGGGATGATGAATTGGAGGAAGGGGAAATCGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bromodomain

Protein Analysis

237

Amino Acids

27.47

Weight (kDa)

6.87

Isoelectric Point (pI)

58.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46550
fragaria_vesca	FvH4_3g06490 FvH4_3g06490 FvH4_3g06490 FvH4_3g06490 FvH4_3g25510 FvH4_3g25881 FvH4_7g09881
malus_domestica	MD05G1292900.v1.1 MD10G1268800.v1.1
prunus_persica	Prupe.4G072500_v2.0.a1
pyrus_communis	pycom05g26940 pycom10g22530
rosa_chinensis	RchiOBHm_Chr5g0012791
rosa_laevigata	RLG00000031956
rosa_multiflora	Rmu_co8165396.1_g000001 Rmu_sc0006811.1_g000013
rosa_roxburghii	Rroxscaffold_1G00063800
rosa_rugosa	Rorug05G0004000 Rorug05G0004100 Rorug05G0004200.1 Rorug05G0004300
rosa_samantha	Rh5AG098000 Rh5BG095000 Rh5CG106900 Rh5DG093700
rosa_wichuraiana	Rw5G008570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	345
AccII	CGCG	1 cut(s)	247
AccIII	TCCGGA	1 cut(s)	569
AciI	CCGC	2 cut(s)	200, 245
AclI	AACGTT	1 cut(s)	85
AclWI	GGATC	2 cut(s)	188, 380
AfiI	CCNNNNNNNGG	1 cut(s)	505
AgsI	TTSAA	3 cut(s)	338, 455, 503
AluBI	AGCT	1 cut(s)	488
AluI	AGCT	1 cut(s)	488
AlwI	GGATC	2 cut(s)	188, 380
Ama87I	CYCGRG	1 cut(s)	100
Aor13HI	TCCGGA	1 cut(s)	569
AoxI	GGCC	1 cut(s)	411
ApeKI	GCWGC	3 cut(s)	79, 320, 430
AsiSI	GCGATCGC	1 cut(s)	599
AspLEI	GCGC	1 cut(s)	346
AsuHPI	GGTGA	3 cut(s)	26, 291, 603
AvaI	CYCGRG	1 cut(s)	100
BbvI	GCAGC	3 cut(s)	66, 307, 442
BceAI	ACGGC	2 cut(s)	398, 573
BciVI	GTATCC	1 cut(s)	566
BfaI	CTAG	1 cut(s)	653
BfuI	GTATCC	1 cut(s)	566
BisI	GCNGC	4 cut(s)	80, 201, 321, 431
BlsI	GCNGC	4 cut(s)	81, 202, 322, 432
BmeT110I	CYCGRG	1 cut(s)	100
BpmI	CTGGAG	1 cut(s)	638
BpuEI	CTTGAG	2 cut(s)	377, 623
BsaWI	WCCGGW	1 cut(s)	569
BsaXI	ACNNNNNCTCC	2 cut(s)	262, 292
Bsc4I	CCNNNNNNNGG	1 cut(s)	505
BseAI	TCCGGA	1 cut(s)	569
BseGI	GGATG	3 cut(s)	28, 649, 685
BseLI	CCNNNNNNNGG	1 cut(s)	505
BseRI	GAGGAG	3 cut(s)	175, 264, 267
BseXI	GCAGC	3 cut(s)	66, 307, 442
BsgI	GTGCAG	1 cut(s)	449
Bsh1236I	CGCG	1 cut(s)	247
Bsh1285I	CGRYCG	1 cut(s)	599
BshFI	GGCC	1 cut(s)	413
BsiEI	CGRYCG	1 cut(s)	599
BsiHKCI	CYCGRG	1 cut(s)	100
BsiSI	CCGG	2 cut(s)	197, 570
BslI	CCNNNNNNNGG	1 cut(s)	505
BsnI	GGCC	1 cut(s)	413
BsoBI	CYCGRG	1 cut(s)	100
Bsp13I	TCCGGA	1 cut(s)	569
Bsp143I	GATC	5 cut(s)	193, 385, 580, 596, 608
BspACI	CCGC	2 cut(s)	200, 245
BspANI	GGCC	1 cut(s)	413
BspEI	TCCGGA	1 cut(s)	569
BspFNI	CGCG	1 cut(s)	247
BspPI	GGATC	2 cut(s)	188, 380
BspQI	GCTCTTC	1 cut(s)	318
BssMI	GATC	5 cut(s)	193, 385, 580, 596, 608
Bst4CI	ACNGT	4 cut(s)	94, 374, 520, 564
Bst6I	CTCTTC	3 cut(s)	318, 432, 498
BstAPI	GCANNNNNTGC	1 cut(s)	76
BstC8I	GCNNGC	1 cut(s)	235
BstDEI	CTNAG	2 cut(s)	306, 464
BstENI	CCTNNNNNAGG	1 cut(s)	503
BstF5I	GGATG	3 cut(s)	28, 649, 685
BstFNI	CGCG	1 cut(s)	247
BstHHI	GCGC	1 cut(s)	346
BstKTI	GATC	5 cut(s)	196, 388, 583, 599, 611
BstMBI	GATC	5 cut(s)	193, 385, 580, 596, 608
BstMCI	CGRYCG	1 cut(s)	599
BstMWI	GCNNNNNNNGC	3 cut(s)	76, 317, 494
BstUI	CGCG	1 cut(s)	247
BstV1I	GCAGC	3 cut(s)	66, 307, 442
BsuI	GTATCC	1 cut(s)	566
BsuRI	GGCC	1 cut(s)	413
BtsCI	GGATG	3 cut(s)	28, 649, 685
Cac8I	GCNNGC	1 cut(s)	235
CfoI	GCGC	1 cut(s)	346
CviAII	CATG	2 cut(s)	71, 317
CviJI	RGCY	8 cut(s)	106, 176, 311, 334, 413, 451, 488, 630
CviKI_1	RGCY	8 cut(s)	106, 176, 311, 334, 413, 451, 488, 630
DdeI	CTNAG	2 cut(s)	306, 464
DpnI	GATC	5 cut(s)	195, 387, 582, 598, 610
DpnII	GATC	5 cut(s)	193, 385, 580, 596, 608
Eam1104I	CTCTTC	3 cut(s)	318, 432, 498
EarI	CTCTTC	3 cut(s)	318, 432, 498
Eco88I	CYCGRG	1 cut(s)	100
EcoNI	CCTNNNNNAGG	1 cut(s)	503
EcoT22I	ATGCAT	1 cut(s)	72
FaeI	CATG	2 cut(s)	74, 320
FaiI	YATR	7 cut(s)	12, 68, 72, 318, 348, 543, 579
FatI	CATG	2 cut(s)	70, 316
Fnu4HI	GCNGC	4 cut(s)	80, 201, 321, 431
FokI	GGATG	3 cut(s)	15, 656, 692
Fsp4HI	GCNGC	4 cut(s)	80, 201, 321, 431
FspBI	CTAG	1 cut(s)	653
FspI	TGCGCA	1 cut(s)	345
GlaI	GCGC	1 cut(s)	345
GluI	GCNGC	4 cut(s)	80, 201, 321, 431
GsuI	CTGGAG	1 cut(s)	638
HaeIII	GGCC	1 cut(s)	413
HapII	CCGG	2 cut(s)	197, 570
HhaI	GCGC	1 cut(s)	346
Hin1II	CATG	2 cut(s)	74, 320
Hin6I	GCGC	1 cut(s)	344
HinP1I	GCGC	1 cut(s)	344
HinfI	GANTC	1 cut(s)	249
HpaII	CCGG	2 cut(s)	197, 570
HphI	GGTGA	3 cut(s)	26, 291, 603
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	2 cut(s)	162, 608
Hpy188III	TCNNGA	3 cut(s)	56, 570, 617
Hpy8I	GTNNAC	1 cut(s)	97
Hpy99I	CGWCG	2 cut(s)	194, 588
HpyAV	CCTTC	1 cut(s)	689
HpyCH4III	ACNGT	4 cut(s)	94, 374, 520, 564
HpyCH4IV	ACGT	1 cut(s)	85
HpyCH4V	TGCA	6 cut(s)	70, 82, 133, 323, 430, 446
HpyF10VI	GCNNNNNNNGC	3 cut(s)	76, 317, 494
HpyF3I	CTNAG	2 cut(s)	306, 464
HpySE526I	ACGT	1 cut(s)	85
Hsp92II	CATG	2 cut(s)	74, 320
HspAI	GCGC	1 cut(s)	344
Kpn2I	TCCGGA	1 cut(s)	569
Kzo9I	GATC	5 cut(s)	193, 385, 580, 596, 608
LguI	GCTCTTC	1 cut(s)	318
LmnI	GCTCC	2 cut(s)	188, 619
LpnPI	CCDG	6 cut(s)	41, 158, 210, 316, 583, 602
Lsp1109I	GCAGC	3 cut(s)	66, 307, 442
MaeI	CTAG	1 cut(s)	653
MaeII	ACGT	1 cut(s)	85
MalI	GATC	5 cut(s)	195, 387, 582, 598, 610
MboI	GATC	5 cut(s)	193, 385, 580, 596, 608
MboII	GAAGA	3 cut(s)	305, 449, 515
MfeI	CAATTG	1 cut(s)	134
MluCI	AATT	6 cut(s)	22, 134, 338, 381, 665, 686
MmeI	TCCRAC	2 cut(s)	185, 424
Mph1103I	ATGCAT	1 cut(s)	72
MroI	TCCGGA	1 cut(s)	569
MseI	TTAA	3 cut(s)	38, 549, 558
MspI	CCGG	2 cut(s)	197, 570
MunI	CAATTG	1 cut(s)	134
MvnI	CGCG	1 cut(s)	247
MwoI	GCNNNNNNNGC	3 cut(s)	76, 317, 494
NdeII	GATC	5 cut(s)	193, 385, 580, 596, 608
NlaIII	CATG	2 cut(s)	74, 320
NsbI	TGCGCA	1 cut(s)	345
NsiI	ATGCAT	1 cut(s)	72
PciSI	GCTCTTC	1 cut(s)	318
PcsI	WCGNNNNNNNCGW	1 cut(s)	592
PfeI	GAWTC	1 cut(s)	249
PkrI	GCNGC	4 cut(s)	81, 202, 322, 432
Ple19I	CGATCG	1 cut(s)	599
Psp1406I	AACGTT	1 cut(s)	85
PvuI	CGATCG	1 cut(s)	599
RgaI	GCGATCGC	1 cut(s)	599
SapI	GCTCTTC	1 cut(s)	318
SaqAI	TTAA	3 cut(s)	38, 549, 558
SatI	GCNGC	4 cut(s)	80, 201, 321, 431
Sau3AI	GATC	5 cut(s)	193, 385, 580, 596, 608
SetI	ASST	6 cut(s)	88, 244, 490, 510, 616, 660
SfaAI	GCGATCGC	1 cut(s)	599
SgfI	GCGATCGC	1 cut(s)	599
SmlI	CTYRAG	2 cut(s)	392, 638
SmoI	CTYRAG	2 cut(s)	392, 638
Sse9I	AATT	6 cut(s)	22, 134, 338, 381, 665, 686
SsiI	CCGC	2 cut(s)	200, 245
SspI	AATATT	1 cut(s)	64
SspMI	CTAG	1 cut(s)	653
TaaI	ACNGT	4 cut(s)	94, 374, 520, 564
TaiI	ACGT	1 cut(s)	88
TaqI	TCGA	1 cut(s)	192
TasI	AATT	6 cut(s)	22, 134, 338, 381, 665, 686
TauI	GCSGC	1 cut(s)	203
TfiI	GAWTC	1 cut(s)	249
Tru1I	TTAA	3 cut(s)	38, 549, 558
Tru9I	TTAA	3 cut(s)	38, 549, 558
TseI	GCWGC	3 cut(s)	79, 320, 430
TspDTI	ATGAA	4 cut(s)	17, 305, 678, 699
TspGWI	ACGGA	2 cut(s)	178, 270
XagI	CCTNNNNNAGG	1 cut(s)	503
XspI	CTAG	1 cut(s)	653
Zsp2I	ATGCAT	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.