Rorug05G0004300

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0006276
Physical Location & Seq
Reverse (-)
290642 .. 292476
1835 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0004300.1

Sequence Viewer

Length: 711 bp
ATGGAACAGGGAGGTTTCCATGGCTACCAAAAGACCCAAAACACGAGCTCCGGGCTGAAACTGTCAGAGATCAACATGAGGCTGGCTGAGATCAGCCACACCAAGAATAGCGCTGCTATCACCAACAATGGTGCTGCTGCTGCTGATGAGAATGAATGCACTGTGCGAGAGCAAGACCGTTTCATGCCCATTGCCAATGTGATCAGAATCATGCGCAAGATCCTGCCCCCGCATGCCAAGATCTCAGACGACGCCAAGGAAACAATCCAAGAGTGTGTCTCAGAGTACATCAGCTTCATCACAGGGGAGGCCAATGAGCGTTGTCAGCGTGAGCAGCGCAAGACCATTACTGCCGAAGACGTGCTGTGGGCAATGAGCAAGCTGGGGTTCGATGACTACATTGAGCCCCTCACTCTCTACCTCCACCGCTTCCGCGAGATGGAGGGAGATCGTGGCTCCATGAGGGCCGAGACTTTGATGAAGACTAGTAGTAGGGCAATGACTGCGGCAGAGTATCATGCAGCTGCAGCAGGCTCTTTCGCTGGTTTTGCTCCTTTTCATCACCATGGCTTTTTCGGATACTTGAAGGATGCGTCCATATCCAATGGGGCAGCTGGTACATCTTTGTCCCAGCAGGCTAATGCTGTTGCTGCAATGGCAAATGGTGATCACCAGGCATCACATTCCCAGTATGATGATAACAATAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromodomain

Protein Analysis

236

Amino Acids

26.03

Weight (kDa)

5.92

Isoelectric Point (pI)

30.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 44 - 125 1.4e-07 Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF PF00808 61 - 125 4.9e-26 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 215
AccII CGCG 1 cut(s) 435
AciI CCGC 4 cut(s) 230, 427, 433, 506
AclWI GGATC 1 cut(s) 214
AcyI GRCGYC 1 cut(s) 252
AfaI GTAC 2 cut(s) 287, 619
AfeI AGCGCT 1 cut(s) 112
AfiI CCNNNNNNNGG 1 cut(s) 439
AgsI TTSAA 1 cut(s) 586
AhlI ACTAGT 1 cut(s) 485
AjiI CACGTC 1 cut(s) 361
AjnI CCWGG 1 cut(s) 672
AluBI AGCT 5 cut(s) 48, 294, 382, 524, 614
AluI AGCT 5 cut(s) 48, 294, 382, 524, 614
Alw21I GWGCWC 1 cut(s) 50
Alw26I GTCTC 2 cut(s) 283, 464
AlwI GGATC 1 cut(s) 214
Aor51HI AGCGCT 1 cut(s) 112
AoxI GGCC 2 cut(s) 309, 465
AspLEI GCGC 3 cut(s) 113, 216, 339
AspS9I GGNCC 1 cut(s) 465
AsuC2I CCSGG 1 cut(s) 52
AsuHPI GGTGA 4 cut(s) 112, 554, 662, 677
BanII GRGCYC 2 cut(s) 50, 408
BarI GAAGNNNNNNTAC 2 cut(s) 278, 310
BauI CACGAG 1 cut(s) 43
BbsI GAAGAC 2 cut(s) 363, 488
Bbv12I GWGCWC 1 cut(s) 50
BccI CCATC 1 cut(s) 433
BciT130I CCWGG 1 cut(s) 674
BciVI GTATCC 1 cut(s) 572
BclI TGATCA 2 cut(s) 201, 667
BcnI CCSGG 1 cut(s) 52
BcoDI GTCTC 2 cut(s) 283, 464
BcuI ACTAGT 1 cut(s) 485
BfaI CTAG 1 cut(s) 486
BfmI CTRYAG 1 cut(s) 525
BfoI RGCGCY 1 cut(s) 114
BfuI GTATCC 1 cut(s) 572
BglII AGATCT 1 cut(s) 240
Bme1390I CCNGG 2 cut(s) 52, 674
BmgBI CACGTC 1 cut(s) 361
BmgT120I GGNCC 1 cut(s) 465
BmiI GGNNCC 1 cut(s) 457
BmrFI CCNGG 2 cut(s) 52, 674
BmrI ACTGGG 1 cut(s) 682
BmsI GCATC 2 cut(s) 580, 686
BmuI ACTGGG 1 cut(s) 682
BpiI GAAGAC 2 cut(s) 363, 488
BplI GAGNNNNNCTC 2 cut(s) 263, 295
BpuMI CCSGG 1 cut(s) 52
BsaBI GATNNNNATC 1 cut(s) 206
BsaHI GRCGYC 1 cut(s) 252
BsaJI CCNNGG 3 cut(s) 19, 255, 565
BsaXI ACNNNNNCTCC 2 cut(s) 32, 62
Bsc4I CCNNNNNNNGG 1 cut(s) 439
Bse1I ACTGG 1 cut(s) 688
Bse3DI GCAATG 4 cut(s) 189, 378, 504, 660
Bse8I GATNNNNATC 1 cut(s) 206
BseBI CCWGG 1 cut(s) 674
BseDI CCNNGG 3 cut(s) 19, 255, 565
BseGI GGATG 1 cut(s) 595
BseJI GATNNNNATC 1 cut(s) 206
BseLI CCNNNNNNNGG 1 cut(s) 439
BseMI GCAATG 4 cut(s) 189, 378, 504, 660
BseMII CTCAG 3 cut(s) 78, 258, 294
BseNI ACTGG 1 cut(s) 688
BseYI CCCAGC 2 cut(s) 382, 630
Bsh1236I CGCG 1 cut(s) 435
BshFI GGCC 2 cut(s) 311, 467
BsiHKAI GWGCWC 1 cut(s) 50
BsiSI CCGG 1 cut(s) 51
BslFI GGGAC 1 cut(s) 613
BslI CCNNNNNNNGG 1 cut(s) 439
BsmAI GTCTC 2 cut(s) 283, 464
BsmFI GGGAC 1 cut(s) 613
BsmI GAATGC 1 cut(s) 161
BsnI GGCC 2 cut(s) 311, 467
Bsp1286I GDGCHC 2 cut(s) 50, 408
Bsp143I GATC 7 cut(s) 69, 90, 201, 219, 240, 448, 667
Bsp19I CCATGG 2 cut(s) 19, 565
BspACI CCGC 4 cut(s) 230, 427, 433, 506
BspANI GGCC 2 cut(s) 311, 467
BspCNI CTCAG 3 cut(s) 79, 257, 293
BspFNI CGCG 1 cut(s) 435
BspLI GGNNCC 1 cut(s) 457
BspMAI CTGCAG 1 cut(s) 529
BspPI GGATC 1 cut(s) 214
BsrDI GCAATG 4 cut(s) 189, 378, 504, 660
BsrI ACTGG 1 cut(s) 688
BssECI CCNNGG 3 cut(s) 19, 255, 565
BssMI GATC 7 cut(s) 69, 90, 201, 219, 240, 448, 667
BssNI GRCGYC 1 cut(s) 252
BssSI CACGAG 1 cut(s) 43
BssT1I CCWWGG 3 cut(s) 19, 255, 565
Bst2BI CACGAG 1 cut(s) 43
Bst2UI CCWGG 1 cut(s) 674
Bst4CI ACNGT 3 cut(s) 63, 163, 179
BstACI GRCGYC 1 cut(s) 252
BstAPI GCANNNNNTGC 1 cut(s) 503
BstC8I GCNNGC 5 cut(s) 84, 234, 380, 532, 636
BstDEI CTNAG 3 cut(s) 87, 244, 280
BstDSI CCRYGG 2 cut(s) 19, 565
BstF5I GGATG 1 cut(s) 595
BstFNI CGCG 1 cut(s) 435
BstH2I RGCGCY 1 cut(s) 114
BstHHI GCGC 3 cut(s) 113, 216, 339
BstKTI GATC 7 cut(s) 72, 93, 204, 222, 243, 451, 670
BstMAI GTCTC 2 cut(s) 283, 464
BstMBI GATC 7 cut(s) 69, 90, 201, 219, 240, 448, 667
BstMWI GCNNNNNNNGC 8 cut(s) 140, 325, 334, 503, 527, 548, 650, 656
BstNI CCWGG 1 cut(s) 674
BstNSI RCATGY 1 cut(s) 236
BstSCI CCNGG 2 cut(s) 50, 672
BstSFI CTRYAG 1 cut(s) 525
BstUI CGCG 1 cut(s) 435
BstV2I GAAGAC 2 cut(s) 363, 488
BstX2I RGATCY 2 cut(s) 219, 240
BstYI RGATCY 2 cut(s) 219, 240
BsuI GTATCC 1 cut(s) 572
BsuRI GGCC 2 cut(s) 311, 467
BtgI CCRYGG 2 cut(s) 19, 565
BtrI CACGTC 1 cut(s) 361
BtsCI GGATG 1 cut(s) 595
BtsIMutI CAGTG 1 cut(s) 159
Cac8I GCNNGC 5 cut(s) 84, 234, 380, 532, 636
CfoI GCGC 3 cut(s) 113, 216, 339
Cfr13I GGNCC 1 cut(s) 465
CseI GACGC 2 cut(s) 260, 582
Csp6I GTAC 2 cut(s) 286, 618
CviAII CATG 8 cut(s) 20, 76, 184, 211, 233, 460, 518, 566
CviQI GTAC 2 cut(s) 286, 618
DdeI CTNAG 3 cut(s) 87, 244, 280
DpnI GATC 7 cut(s) 71, 92, 203, 221, 242, 450, 669
DpnII GATC 7 cut(s) 69, 90, 201, 219, 240, 448, 667
Ecl136II GAGCTC 1 cut(s) 48
Eco130I CCWWGG 3 cut(s) 19, 255, 565
Eco24I GRGCYC 2 cut(s) 50, 408
Eco47III AGCGCT 1 cut(s) 112
Eco53kI GAGCTC 1 cut(s) 48
EcoICRI GAGCTC 1 cut(s) 48
EcoRII CCWGG 1 cut(s) 672
EcoT14I CCWWGG 3 cut(s) 19, 255, 565
EcoT38I GRGCYC 2 cut(s) 50, 408
ErhI CCWWGG 3 cut(s) 19, 255, 565
FaeI CATG 8 cut(s) 23, 79, 187, 214, 236, 463, 521, 569
FaqI GGGAC 1 cut(s) 613
FatI CATG 8 cut(s) 19, 75, 183, 210, 232, 459, 517, 565
FauI CCCGC 1 cut(s) 237
FbaI TGATCA 2 cut(s) 201, 667
FokI GGATG 1 cut(s) 602
FriOI GRGCYC 2 cut(s) 50, 408
FspBI CTAG 1 cut(s) 486
FspI TGCGCA 1 cut(s) 215
GlaI GCGC 3 cut(s) 112, 215, 338
GsaI CCCAGC 2 cut(s) 386, 634
HaeII RGCGCY 1 cut(s) 114
HaeIII GGCC 2 cut(s) 311, 467
HapII CCGG 1 cut(s) 51
HgaI GACGC 2 cut(s) 260, 582
HhaI GCGC 3 cut(s) 113, 216, 339
Hin1I GRCGYC 1 cut(s) 252
Hin1II CATG 8 cut(s) 23, 79, 187, 214, 236, 463, 521, 569
Hin6I GCGC 3 cut(s) 111, 214, 337
HinP1I GCGC 3 cut(s) 111, 214, 337
HinfI GANTC 1 cut(s) 207
HpaII CCGG 1 cut(s) 51
HphI GGTGA 4 cut(s) 112, 554, 662, 677
Hpy188I TCNGA 5 cut(s) 67, 206, 247, 283, 578
Hpy99I CGWCG 1 cut(s) 254
HpyAV CCTTC 1 cut(s) 580
HpyCH4III ACNGT 3 cut(s) 63, 163, 179
HpyCH4IV ACGT 1 cut(s) 360
HpyCH4V TGCA 4 cut(s) 159, 521, 527, 653
HpyF10VI GCNNNNNNNGC 8 cut(s) 140, 325, 334, 503, 527, 548, 650, 656
HpyF3I CTNAG 3 cut(s) 87, 244, 280
HpySE526I ACGT 1 cut(s) 360
Hsp92I GRCGYC 1 cut(s) 252
Hsp92II CATG 8 cut(s) 23, 79, 187, 214, 236, 463, 521, 569
HspAI GCGC 3 cut(s) 111, 214, 337
Ksp22I TGATCA 2 cut(s) 201, 667
Kzo9I GATC 7 cut(s) 69, 90, 201, 219, 240, 448, 667
LmnI GCTCC 3 cut(s) 53, 461, 556
LweI GCATC 2 cut(s) 580, 686
MaeI CTAG 1 cut(s) 486
MaeII ACGT 1 cut(s) 360
MalI GATC 7 cut(s) 71, 92, 203, 221, 242, 450, 669
MboI GATC 7 cut(s) 69, 90, 201, 219, 240, 448, 667
MboII GAAGA 2 cut(s) 368, 493
MflI RGATCY 2 cut(s) 219, 240
MhlI GDGCHC 2 cut(s) 50, 408
MnlI CCTC 7 cut(s) 5, 72, 301, 419, 431, 436, 456
MslI CAYNNNNRTG 1 cut(s) 564
MspA1I CMGCKG 2 cut(s) 524, 614
MspI CCGG 1 cut(s) 51
MspR9I CCNGG 2 cut(s) 52, 674
Mva1269I GAATGC 1 cut(s) 161
MvaI CCWGG 1 cut(s) 674
MvnI CGCG 1 cut(s) 435
MwoI GCNNNNNNNGC 8 cut(s) 140, 325, 334, 503, 527, 548, 650, 656
NciI CCSGG 1 cut(s) 52
NcoI CCATGG 2 cut(s) 19, 565
NdeII GATC 7 cut(s) 69, 90, 201, 219, 240, 448, 667
NlaIII CATG 8 cut(s) 23, 79, 187, 214, 236, 463, 521, 569
NlaIV GGNNCC 1 cut(s) 457
NmeAIII GCCGAG 1 cut(s) 493
NsbI TGCGCA 1 cut(s) 215
NspI RCATGY 1 cut(s) 236
PaeI GCATGC 1 cut(s) 236
PctI GAATGC 1 cut(s) 161
PfeI GAWTC 1 cut(s) 207
Psp124BI GAGCTC 1 cut(s) 50
Psp6I CCWGG 1 cut(s) 672
PspFI CCCAGC 2 cut(s) 382, 630
PspGI CCWGG 1 cut(s) 672
PspN4I GGNNCC 1 cut(s) 457
PspPI GGNCC 1 cut(s) 465
PstI CTGCAG 1 cut(s) 529
PsuI RGATCY 2 cut(s) 219, 240
PvuII CAGCTG 2 cut(s) 524, 614
RsaI GTAC 2 cut(s) 287, 619
RsaNI GTAC 2 cut(s) 286, 618
RseI CAYNNNNRTG 1 cut(s) 564
SacI GAGCTC 1 cut(s) 50
Sau3AI GATC 7 cut(s) 69, 90, 201, 219, 240, 448, 667
Sau96I GGNCC 1 cut(s) 465
ScrFI CCNGG 2 cut(s) 52, 674
SduI GDGCHC 2 cut(s) 50, 408
SetI ASST 8 cut(s) 16, 50, 296, 363, 384, 423, 526, 616
SfaNI GCATC 2 cut(s) 580, 686
SfcI CTRYAG 1 cut(s) 525
SmiMI CAYNNNNRTG 1 cut(s) 564
SpeI ACTAGT 1 cut(s) 485
SphI GCATGC 1 cut(s) 236
SsiI CCGC 4 cut(s) 230, 427, 433, 506
SspMI CTAG 1 cut(s) 486
SstI GAGCTC 1 cut(s) 50
StyD4I CCNGG 2 cut(s) 50, 672
StyI CCWWGG 3 cut(s) 19, 255, 565
TaaI ACNGT 3 cut(s) 63, 163, 179
TaiI ACGT 1 cut(s) 363
TaqI TCGA 1 cut(s) 390
TatI WGTACW 1 cut(s) 285
TauI GCSGC 1 cut(s) 509
TfiI GAWTC 1 cut(s) 207
TscAI CASTG 1 cut(s) 166
TspDTI ATGAA 5 cut(s) 168, 172, 286, 494, 548
TspRI CASTG 1 cut(s) 166
XceI RCATGY 1 cut(s) 236
XspI CTAG 1 cut(s) 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.