Transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G46550 |
| fragaria_vesca | FvH4_3g06490 FvH4_3g06490 FvH4_3g06490 FvH4_3g06490 FvH4_3g25510 FvH4_3g25881 FvH4_7g09881 |
| malus_domestica | MD05G1292900.v1.1 MD10G1268800.v1.1 |
| prunus_persica | Prupe.4G072500_v2.0.a1 |
| pyrus_communis | pycom05g26940 pycom10g22530 |
| rosa_chinensis | RchiOBHm_Chr5g0012791 |
| rosa_laevigata | RLG00000031956 |
| rosa_multiflora | Rmu_co8165396.1_g000001 Rmu_sc0006811.1_g000013 |
| rosa_roxburghii | Rroxscaffold_1G00063800 |
| rosa_rugosa | Rorug05G0004000 Rorug05G0004100 Rorug05G0004200.1 Rorug05G0004300 |
| rosa_samantha | Rh5AG098000 Rh5BG095000 Rh5CG106900 Rh5DG093700 |
| rosa_wichuraiana | Rw5G008570 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 401 |
| Acc36I | ACCTGC | 1 cut(s) | 1079 |
| AccBSI | CCGCTC | 1 cut(s) | 454 |
| AccII | CGCG | 1 cut(s) | 750 |
| AciI | CCGC | 4 cut(s) | 392, 454, 748, 808 |
| AclWI | GGATC | 3 cut(s) | 113, 126, 383 |
| AcsI | RAATTY | 1 cut(s) | 976 |
| AcuI | CTGAAG | 2 cut(s) | 131, 566 |
| AdeI | CACNNNGTG | 1 cut(s) | 235 |
| AfaI | GTAC | 1 cut(s) | 307 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 284, 356, 535 |
| AjnI | CCWGG | 1 cut(s) | 645 |
| Alw21I | GWGCWC | 2 cut(s) | 88, 300 |
| Alw26I | GTCTC | 2 cut(s) | 175, 993 |
| AlwI | GGATC | 3 cut(s) | 113, 126, 383 |
| Ama87I | CYCGRG | 1 cut(s) | 1041 |
| AoxI | GGCC | 1 cut(s) | 92 |
| ApeKI | GCWGC | 6 cut(s) | 200, 272, 368, 460, 716, 817 |
| ApoI | RAATTY | 1 cut(s) | 976 |
| AspS9I | GGNCC | 4 cut(s) | 92, 626, 745, 1018 |
| AsuC2I | CCSGG | 1 cut(s) | 90 |
| AsuHPI | GGTGA | 2 cut(s) | 339, 633 |
| AvaI | CYCGRG | 1 cut(s) | 1041 |
| AvaII | GGWCC | 3 cut(s) | 626, 745, 1018 |
| BamHI | GGATCC | 1 cut(s) | 118 |
| BanII | GRGCYC | 2 cut(s) | 88, 300 |
| BauI | CACGAG | 1 cut(s) | 172 |
| BbsI | GAAGAC | 1 cut(s) | 353 |
| Bbv12I | GWGCWC | 2 cut(s) | 88, 300 |
| BbvCI | CCTCAGC | 1 cut(s) | 720 |
| BbvI | GCAGC | 6 cut(s) | 187, 259, 355, 472, 728, 804 |
| BccI | CCATC | 3 cut(s) | 29, 109, 1075 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 455, 489, 1032, 1066 |
| BciT130I | CCWGG | 1 cut(s) | 647 |
| BclI | TGATCA | 1 cut(s) | 280 |
| BcnI | CCSGG | 1 cut(s) | 90 |
| BcoDI | GTCTC | 2 cut(s) | 175, 993 |
| BfaI | CTAG | 1 cut(s) | 870 |
| BfuAI | ACCTGC | 1 cut(s) | 1079 |
| BisI | GCNGC | 6 cut(s) | 201, 273, 369, 461, 717, 818 |
| BlsI | GCNGC | 6 cut(s) | 202, 274, 370, 462, 718, 819 |
| Bme1390I | CCNGG | 2 cut(s) | 90, 647 |
| Bme18I | GGWCC | 3 cut(s) | 626, 745, 1018 |
| BmeT110I | CYCGRG | 1 cut(s) | 1041 |
| BmgT120I | GGNCC | 4 cut(s) | 92, 626, 745, 1018 |
| BmiI | GGNNCC | 3 cut(s) | 93, 120, 627 |
| BmrFI | CCNGG | 2 cut(s) | 90, 647 |
| BmsI | GCATC | 2 cut(s) | 58, 64 |
| BpiI | GAAGAC | 1 cut(s) | 353 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 70, 102 |
| BpmI | CTGGAG | 1 cut(s) | 668 |
| Bpu10I | CCTNAGC | 1 cut(s) | 720 |
| BpuEI | CTTGAG | 1 cut(s) | 653 |
| BpuMI | CCSGG | 1 cut(s) | 90 |
| BsaI | GGTCTC | 1 cut(s) | 175 |
| BsaJI | CCNNGG | 2 cut(s) | 89, 645 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 538, 568 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 284, 356, 535 |
| Bse1I | ACTGG | 1 cut(s) | 303 |
| Bse3DI | GCAATG | 1 cut(s) | 1048 |
| BseBI | CCWGG | 1 cut(s) | 647 |
| BseDI | CCNNGG | 2 cut(s) | 89, 645 |
| BseGI | GGATG | 2 cut(s) | 679, 1067 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 284, 356, 535 |
| BseMI | GCAATG | 1 cut(s) | 1048 |
| BseMII | CTCAG | 2 cut(s) | 50, 711 |
| BseNI | ACTGG | 1 cut(s) | 303 |
| BseRI | GAGGAG | 4 cut(s) | 559, 741, 744, 856 |
| BseXI | GCAGC | 6 cut(s) | 187, 259, 355, 472, 728, 804 |
| BsgI | GTGCAG | 1 cut(s) | 258 |
| Bsh1236I | CGCG | 1 cut(s) | 750 |
| BshFI | GGCC | 1 cut(s) | 94 |
| BsiHKAI | GWGCWC | 2 cut(s) | 88, 300 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1041 |
| BsiSI | CCGG | 1 cut(s) | 89 |
| BslFI | GGGAC | 1 cut(s) | 639 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 284, 356, 535 |
| BsmAI | GTCTC | 2 cut(s) | 175, 993 |
| BsmFI | GGGAC | 1 cut(s) | 639 |
| BsnI | GGCC | 1 cut(s) | 94 |
| Bso31I | GGTCTC | 1 cut(s) | 175 |
| BsoBI | CYCGRG | 1 cut(s) | 1041 |
| Bsp1286I | GDGCHC | 2 cut(s) | 88, 300 |
| Bsp143I | GATC | 5 cut(s) | 45, 118, 280, 375, 638 |
| BspACI | CCGC | 4 cut(s) | 392, 454, 748, 808 |
| BspANI | GGCC | 1 cut(s) | 94 |
| BspCNI | CTCAG | 2 cut(s) | 51, 712 |
| BspFNI | CGCG | 1 cut(s) | 750 |
| BspLI | GGNNCC | 3 cut(s) | 93, 120, 627 |
| BspMI | ACCTGC | 1 cut(s) | 1079 |
| BspPI | GGATC | 3 cut(s) | 113, 126, 383 |
| BspTNI | GGTCTC | 1 cut(s) | 175 |
| BsrBI | CCGCTC | 1 cut(s) | 454 |
| BsrDI | GCAATG | 1 cut(s) | 1048 |
| BsrI | ACTGG | 1 cut(s) | 303 |
| BssECI | CCNNGG | 2 cut(s) | 89, 645 |
| BssMI | GATC | 5 cut(s) | 45, 118, 280, 375, 638 |
| BssSI | CACGAG | 1 cut(s) | 172 |
| Bst2BI | CACGAG | 1 cut(s) | 172 |
| Bst2UI | CCWGG | 1 cut(s) | 647 |
| Bst4CI | ACNGT | 2 cut(s) | 310, 895 |
| Bst6I | CTCTTC | 3 cut(s) | 71, 149, 462 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 847 |
| BstC8I | GCNNGC | 2 cut(s) | 300, 815 |
| BstDEI | CTNAG | 3 cut(s) | 59, 72, 720 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 533 |
| BstF5I | GGATG | 2 cut(s) | 679, 1067 |
| BstFNI | CGCG | 1 cut(s) | 750 |
| BstKTI | GATC | 5 cut(s) | 48, 121, 283, 378, 641 |
| BstMAI | GTCTC | 2 cut(s) | 175, 993 |
| BstMBI | GATC | 5 cut(s) | 45, 118, 280, 375, 638 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 187, 272, 460, 524, 814, 847 |
| BstNI | CCWGG | 1 cut(s) | 647 |
| BstNSI | RCATGY | 1 cut(s) | 817 |
| BstSCI | CCNGG | 2 cut(s) | 88, 645 |
| BstUI | CGCG | 1 cut(s) | 750 |
| BstV1I | GCAGC | 6 cut(s) | 187, 259, 355, 472, 728, 804 |
| BstV2I | GAAGAC | 1 cut(s) | 353 |
| BstX2I | RGATCY | 1 cut(s) | 118 |
| BstYI | RGATCY | 1 cut(s) | 118 |
| BsuRI | GGCC | 1 cut(s) | 94 |
| BtsCI | GGATG | 2 cut(s) | 679, 1067 |
| BveI | ACCTGC | 1 cut(s) | 1079 |
| Cac8I | GCNNGC | 2 cut(s) | 300, 815 |
| Cfr13I | GGNCC | 4 cut(s) | 92, 626, 745, 1018 |
| CseI | GACGC | 1 cut(s) | 404 |
| Csp6I | GTAC | 1 cut(s) | 306 |
| CviAII | CATG | 4 cut(s) | 284, 365, 814, 842 |
| CviQI | GTAC | 1 cut(s) | 306 |
| DdeI | CTNAG | 3 cut(s) | 59, 72, 720 |
| DpnI | GATC | 5 cut(s) | 47, 120, 282, 377, 640 |
| DpnII | GATC | 5 cut(s) | 45, 118, 280, 375, 638 |
| DraIII | CACNNNGTG | 1 cut(s) | 235 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 401 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 401 |
| Eam1104I | CTCTTC | 3 cut(s) | 71, 149, 462 |
| EarI | CTCTTC | 3 cut(s) | 71, 149, 462 |
| Ecl136II | GAGCTC | 2 cut(s) | 86, 298 |
| Eco24I | GRGCYC | 2 cut(s) | 88, 300 |
| Eco31I | GGTCTC | 1 cut(s) | 175 |
| Eco47I | GGWCC | 3 cut(s) | 626, 745, 1018 |
| Eco53kI | GAGCTC | 2 cut(s) | 86, 298 |
| Eco57I | CTGAAG | 2 cut(s) | 131, 566 |
| Eco88I | CYCGRG | 1 cut(s) | 1041 |
| EcoICRI | GAGCTC | 2 cut(s) | 86, 298 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 533 |
| EcoRII | CCWGG | 1 cut(s) | 645 |
| EcoT38I | GRGCYC | 2 cut(s) | 88, 300 |
| FaeI | CATG | 4 cut(s) | 287, 368, 817, 845 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 371, 403, 431, 463 |
| FaqI | GGGAC | 1 cut(s) | 639 |
| FatI | CATG | 4 cut(s) | 283, 364, 813, 841 |
| FauI | CCCGC | 1 cut(s) | 447 |
| FbaI | TGATCA | 1 cut(s) | 280 |
| Fnu4HI | GCNGC | 6 cut(s) | 201, 273, 369, 461, 717, 818 |
| FokI | GGATG | 2 cut(s) | 686, 1054 |
| FriOI | GRGCYC | 2 cut(s) | 88, 300 |
| Fsp4HI | GCNGC | 6 cut(s) | 201, 273, 369, 461, 717, 818 |
| FspBI | CTAG | 1 cut(s) | 870 |
| GluI | GCNGC | 6 cut(s) | 201, 273, 369, 461, 717, 818 |
| GsuI | CTGGAG | 1 cut(s) | 668 |
| HaeIII | GGCC | 1 cut(s) | 94 |
| HapII | CCGG | 1 cut(s) | 89 |
| HgaI | GACGC | 1 cut(s) | 404 |
| Hin1II | CATG | 4 cut(s) | 287, 368, 817, 845 |
| HindIII | AAGCTT | 1 cut(s) | 380 |
| HinfI | GANTC | 3 cut(s) | 141, 159, 754 |
| HpaII | CCGG | 1 cut(s) | 89 |
| HphI | GGTGA | 2 cut(s) | 339, 633 |
| Hpy166II | GTNNAC | 1 cut(s) | 225 |
| Hpy188I | TCNGA | 4 cut(s) | 60, 604, 638, 759 |
| Hpy188III | TCNNGA | 4 cut(s) | 32, 584, 1021, 1041 |
| Hpy8I | GTNNAC | 1 cut(s) | 225 |
| HpyAV | CCTTC | 4 cut(s) | 132, 494, 590, 736 |
| HpyCH4III | ACNGT | 2 cut(s) | 310, 895 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 187, 272, 460, 524, 814, 847 |
| HpyF3I | CTNAG | 3 cut(s) | 59, 72, 720 |
| Hsp92II | CATG | 4 cut(s) | 287, 368, 817, 845 |
| Ksp22I | TGATCA | 1 cut(s) | 280 |
| Kzo9I | GATC | 5 cut(s) | 45, 118, 280, 375, 638 |
| LmnI | GCTCC | 5 cut(s) | 83, 91, 457, 523, 649 |
| Lsp1109I | GCAGC | 6 cut(s) | 187, 259, 355, 472, 728, 804 |
| LweI | GCATC | 2 cut(s) | 58, 64 |
| MaeI | CTAG | 1 cut(s) | 870 |
| MaeIII | GTNAC | 2 cut(s) | 235, 493 |
| MalI | GATC | 5 cut(s) | 47, 120, 282, 377, 640 |
| MbiI | CCGCTC | 1 cut(s) | 454 |
| MboI | GATC | 5 cut(s) | 45, 118, 280, 375, 638 |
| MboII | GAAGA | 8 cut(s) | 88, 115, 124, 166, 353, 479, 524, 772 |
| MflI | RGATCY | 1 cut(s) | 118 |
| MhlI | GDGCHC | 2 cut(s) | 88, 300 |
| MluCI | AATT | 5 cut(s) | 14, 261, 699, 976, 982 |
| MmeI | TCCRAC | 1 cut(s) | 454 |
| MseI | TTAA | 5 cut(s) | 51, 591, 698, 1100, 1108 |
| MspA1I | CMGCKG | 1 cut(s) | 719 |
| MspI | CCGG | 1 cut(s) | 89 |
| MspR9I | CCNGG | 2 cut(s) | 90, 647 |
| MvaI | CCWGG | 1 cut(s) | 647 |
| MvnI | CGCG | 1 cut(s) | 750 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 187, 272, 460, 524, 814, 847 |
| NciI | CCSGG | 1 cut(s) | 90 |
| NdeII | GATC | 5 cut(s) | 45, 118, 280, 375, 638 |
| NlaIII | CATG | 4 cut(s) | 287, 368, 817, 845 |
| NlaIV | GGNNCC | 3 cut(s) | 93, 120, 627 |
| NmeAIII | GCCGAG | 2 cut(s) | 120, 876 |
| NmuCI | GTSAC | 2 cut(s) | 235, 493 |
| NspI | RCATGY | 1 cut(s) | 817 |
| PaeI | GCATGC | 1 cut(s) | 817 |
| PaeR7I | CTCGAG | 1 cut(s) | 1041 |
| PfeI | GAWTC | 3 cut(s) | 141, 159, 754 |
| PkrI | GCNGC | 6 cut(s) | 202, 274, 370, 462, 718, 819 |
| Psp124BI | GAGCTC | 2 cut(s) | 88, 300 |
| Psp6I | CCWGG | 1 cut(s) | 645 |
| PspGI | CCWGG | 1 cut(s) | 645 |
| PspN4I | GGNNCC | 3 cut(s) | 93, 120, 627 |
| PspPI | GGNCC | 4 cut(s) | 92, 626, 745, 1018 |
| PsuI | RGATCY | 1 cut(s) | 118 |
| PvuII | CAGCTG | 1 cut(s) | 719 |
| RsaI | GTAC | 1 cut(s) | 307 |
| RsaNI | GTAC | 1 cut(s) | 306 |
| SacI | GAGCTC | 2 cut(s) | 88, 300 |
| SaqAI | TTAA | 5 cut(s) | 51, 591, 698, 1100, 1108 |
| SatI | GCNGC | 6 cut(s) | 201, 273, 369, 461, 717, 818 |
| Sau3AI | GATC | 5 cut(s) | 45, 118, 280, 375, 638 |
| Sau96I | GGNCC | 4 cut(s) | 92, 626, 745, 1018 |
| ScrFI | CCNGG | 2 cut(s) | 90, 647 |
| SduI | GDGCHC | 2 cut(s) | 88, 300 |
| SfaNI | GCATC | 2 cut(s) | 58, 64 |
| Sfr274I | CTCGAG | 1 cut(s) | 1041 |
| SinI | GGWCC | 3 cut(s) | 626, 745, 1018 |
| SlaI | CTCGAG | 1 cut(s) | 1041 |
| SmlI | CTYRAG | 2 cut(s) | 668, 1041 |
| SmoI | CTYRAG | 2 cut(s) | 668, 1041 |
| SphI | GCATGC | 1 cut(s) | 817 |
| Sse9I | AATT | 5 cut(s) | 14, 261, 699, 976, 982 |
| SsiI | CCGC | 4 cut(s) | 392, 454, 748, 808 |
| SspI | AATATT | 1 cut(s) | 904 |
| SspMI | CTAG | 1 cut(s) | 870 |
| SstI | GAGCTC | 2 cut(s) | 88, 300 |
| StyD4I | CCNGG | 2 cut(s) | 88, 645 |
| TaaI | ACNGT | 2 cut(s) | 310, 895 |
| TaqI | TCGA | 2 cut(s) | 465, 1042 |
| TasI | AATT | 5 cut(s) | 14, 261, 699, 976, 982 |
| TatI | WGTACW | 1 cut(s) | 305 |
| TfiI | GAWTC | 3 cut(s) | 141, 159, 754 |
| Tru1I | TTAA | 5 cut(s) | 51, 591, 698, 1100, 1108 |
| Tru9I | TTAA | 5 cut(s) | 51, 591, 698, 1100, 1108 |
| TseFI | GTSAC | 2 cut(s) | 235, 493 |
| TseI | GCWGC | 6 cut(s) | 200, 272, 368, 460, 716, 817 |
| Tsp45I | GTSAC | 2 cut(s) | 235, 493 |
| TspDTI | ATGAA | 5 cut(s) | 353, 772, 900, 914, 934 |
| VpaK11BI | GGWCC | 3 cut(s) | 626, 745, 1018 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 533 |
| XapI | RAATTY | 1 cut(s) | 976 |
| XceI | RCATGY | 1 cut(s) | 817 |
| XhoI | CTCGAG | 1 cut(s) | 1041 |
| XspI | CTAG | 1 cut(s) | 870 |