Rh5DG093700

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0006276
Physical Location & Seq
Reverse (-)
8607988 .. 8612109
4122 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG093700.1

Sequence Viewer

Length: 1323 bp
ATGATTGCCACCGAAACAACCATGTTATCGGGCAGCAAGCTGAAGATCAAATTTTCCTGCAAAAGAATAGAAGTTGAGCCCGATGACGGGAAAGTGTCGCGTGACTTTGGGAATACAGTGTCAGCCAGGGGTTTGAGCTCTGTTGCACAAACTTCTCTTCCGGGTGGTAAGAAGAGGGGACCCTCAGGGGACATTGAGGCTCCGAGAGAGAAGAAGTTGAAGATGGATCGTAAAGTGAAGGGTCAGTGCTCAACAATTCTGAATTCACTGATTTCTCATAAGGACTCTTGGGCCTTCAGAAAACCAGTTGATCCTGTTGAGCTACAAATTCCTGATTATTTTGATGTCATCTCTTCTCCCATGGATTTGGGAACGATCAAATCAAAGCTGGACAGAAATTTGTATTTTGGCGCTGGAGAGTTCGCAGCTGATGTCAGATTGACCTTTTCTAATGCCATGCTCTATAATCCCCCGGGCAATCCTTTTCATCAGATGGCAAAAGACCTAAATACAAAGTTTGAGATGAAATGGAGACAAGTGGATGTGAAGTGGAGTCAGGGAAGCTCGAAGGTTGATATGGGGAAAAATTCCTGTGGGCAAGTTAAGAAAATAACTGAAATAACTGATACGAGACTGAATTCCCATAAAACTACTCTGTTTCAGAGTGTATCAGTGTCCAAAAGCCCAGTCCTCAGCAGAGAGAATGTTGGAGCTGCTTTTGGTGCAAGTGATGGTGAGGTAGAGCTTGCCAAAACAGTCAAGAACGCCACTCCAAAAATGTCGGGAAAGAACTTCAATAGAGGCTGCGATAGTGGTGGCAGACAATCTTCTGGCTCTAGAAGTGCAAAGCAGCCACCAAGCTTGGTTGGTAGCAAATGTGGAACATGTGGCAACATTACATGCCGATGCAGCCTGCGCACTGACTATCGCTCCTCAAGTGACATATCTTCTGAGAGGTCTGTAGGCAGAGAACAAAATCATCATTTGTCTATTGCCAATGTATCCGGACTGGATTGTCAAGCAAAAGGCTCTTCTACATCCCATATGAGCAAGTCAGATCCAGAGTCTGATGGGGCCGTAAGTGCTCTGGATGAGGAAACCATATGTCCCAGTTCTCAGCTTACAACCCCAGTCACAGATGCTACTTCTGGAGAAGAATGGAGCACACCTATTTTTAGTGTTCCACTATCACCAAAAAAGGCTCTCCGTGCTGCAATGCTGAAGAGTCGCTTTGCGGATACTATTTTGAAAGCTCAACAGAAAAGTCTGCTTGATCAAGTAAGACTTATCTTTTTGATAAAAGATCATGCAAGTTTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromodomain

Protein Analysis

440

Amino Acids

47.75

Weight (kDa)

9.35

Isoelectric Point (pI)

39.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 83 - 167 1.5e-20 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1014
Acc16I TGCGCA 1 cut(s) 917
AccII CGCG 1 cut(s) 100
AccIII TCCGGA 1 cut(s) 1004
AciI CCGC 1 cut(s) 1235
AclWI GGATC 3 cut(s) 234, 305, 1052
AcsI RAATTY 6 cut(s) 50, 262, 327, 397, 586, 637
AcuI CTGAAG 3 cut(s) 62, 280, 1241
AfiI CCNNNNNNNGG 2 cut(s) 86, 87
AflIII ACRYGT 1 cut(s) 884
AgsI TTSAA 3 cut(s) 220, 796, 1249
AjnI CCWGG 1 cut(s) 125
Alw21I GWGCWC 4 cut(s) 140, 251, 1087, 1166
Alw26I GTCTC 2 cut(s) 526, 625
AlwI GGATC 3 cut(s) 234, 305, 1052
AlwNI CAGNNNCTG 1 cut(s) 1067
Ama87I CYCGRG 1 cut(s) 472
Aor13HI TCCGGA 1 cut(s) 1004
AoxI GGCC 2 cut(s) 291, 1074
ApeKI GCWGC 7 cut(s) 33, 425, 713, 804, 850, 909, 1211
ApoI RAATTY 6 cut(s) 50, 262, 327, 397, 586, 637
ArsI GACNNNNNNTTYG 2 cut(s) 672, 704
AspLEI GCGC 2 cut(s) 413, 918
AspS9I GGNCC 3 cut(s) 179, 291, 1074
AsuC2I CCSGG 3 cut(s) 162, 473, 474
AsuHPI GGTGA 2 cut(s) 746, 1182
AvaI CYCGRG 1 cut(s) 472
AvaII GGWCC 1 cut(s) 179
AxyI CCTNAGG 1 cut(s) 184
BanII GRGCYC 2 cut(s) 81, 140
Bbv12I GWGCWC 4 cut(s) 140, 251, 1087, 1166
BbvCI CCTCAGC 1 cut(s) 692
BbvI GCAGC 7 cut(s) 45, 437, 700, 791, 862, 921, 1198
BccI CCATC 4 cut(s) 217, 487, 725, 1064
BceAI ACGGC 1 cut(s) 1061
BciT130I CCWGG 1 cut(s) 127
BciVI GTATCC 2 cut(s) 1012, 1231
BclI TGATCA 1 cut(s) 1273
BcnI CCSGG 3 cut(s) 162, 473, 474
BcoDI GTCTC 2 cut(s) 526, 625
BfaI CTAG 1 cut(s) 837
BfmI CTRYAG 1 cut(s) 960
BfoI RGCGCY 1 cut(s) 414
BfuI GTATCC 2 cut(s) 1012, 1231
BisI GCNGC 7 cut(s) 34, 426, 714, 805, 851, 910, 1212
BlsI GCNGC 7 cut(s) 35, 427, 715, 806, 852, 911, 1213
Bme1390I CCNGG 4 cut(s) 127, 162, 473, 474
Bme18I GGWCC 1 cut(s) 179
BmeT110I CYCGRG 1 cut(s) 472
BmgT120I GGNCC 3 cut(s) 179, 291, 1074
BmiI GGNNCC 4 cut(s) 180, 181, 201, 1075
BmrFI CCNGG 4 cut(s) 127, 162, 473, 474
BmrI ACTGGG 3 cut(s) 680, 1104, 1124
BmsI GCATC 2 cut(s) 896, 1129
BmuI ACTGGG 3 cut(s) 680, 1104, 1124
BpmI CTGGAG 2 cut(s) 435, 1170
Bpu10I CCTNAGC 1 cut(s) 692
BpuEI CTTGAG 1 cut(s) 919
BpuMI CCSGG 3 cut(s) 162, 473, 474
BsaJI CCNNGG 4 cut(s) 126, 360, 471, 472
BsaWI WCCGGW 1 cut(s) 1004
BsaXI ACNNNNNCTCC 2 cut(s) 914, 944
Bsc4I CCNNNNNNNGG 2 cut(s) 86, 87
Bse1I ACTGG 5 cut(s) 305, 686, 1014, 1110, 1130
Bse21I CCTNAGG 1 cut(s) 184
Bse3DI GCAATG 1 cut(s) 1221
BseAI TCCGGA 1 cut(s) 1004
BseBI CCWGG 1 cut(s) 127
BseDI CCNNGG 4 cut(s) 126, 360, 471, 472
BseGI GGATG 3 cut(s) 547, 1037, 1096
BseLI CCNNNNNNNGG 2 cut(s) 86, 87
BseMI GCAATG 1 cut(s) 1221
BseMII CTCAG 4 cut(s) 198, 706, 942, 1130
BseNI ACTGG 5 cut(s) 305, 686, 1014, 1110, 1130
BseRI GAGGAG 1 cut(s) 922
BseXI GCAGC 7 cut(s) 45, 437, 700, 791, 862, 921, 1198
Bsh1236I CGCG 1 cut(s) 100
BshFI GGCC 2 cut(s) 293, 1076
BsiHKAI GWGCWC 4 cut(s) 140, 251, 1087, 1166
BsiHKCI CYCGRG 1 cut(s) 472
BsiSI CCGG 3 cut(s) 161, 473, 1005
BslFI GGGAC 3 cut(s) 192, 203, 1092
BslI CCNNNNNNNGG 2 cut(s) 86, 87
BsmAI GTCTC 2 cut(s) 526, 625
BsmFI GGGAC 3 cut(s) 192, 203, 1092
BsnI GGCC 2 cut(s) 293, 1076
BsoBI CYCGRG 1 cut(s) 472
Bsp1286I GDGCHC 5 cut(s) 81, 140, 251, 1087, 1166
Bsp13I TCCGGA 1 cut(s) 1004
Bsp143I GATC 7 cut(s) 45, 226, 310, 375, 1057, 1273, 1303
Bsp19I CCATGG 1 cut(s) 360
BspACI CCGC 1 cut(s) 1235
BspANI GGCC 2 cut(s) 293, 1076
BspCNI CTCAG 4 cut(s) 197, 705, 943, 1129
BspEI TCCGGA 1 cut(s) 1004
BspFNI CGCG 1 cut(s) 100
BspLI GGNNCC 4 cut(s) 180, 181, 201, 1075
BspPI GGATC 3 cut(s) 234, 305, 1052
BspQI GCTCTTC 1 cut(s) 1036
BsrDI GCAATG 1 cut(s) 1221
BsrI ACTGG 5 cut(s) 305, 686, 1014, 1110, 1130
BssECI CCNNGG 4 cut(s) 126, 360, 471, 472
BssMI GATC 7 cut(s) 45, 226, 310, 375, 1057, 1273, 1303
BssT1I CCWWGG 1 cut(s) 360
Bst2UI CCWGG 1 cut(s) 127
Bst4CI ACNGT 2 cut(s) 118, 757
Bst6I CTCTTC 5 cut(s) 162, 167, 358, 1036, 1217
BstC8I GCNNGC 3 cut(s) 38, 747, 914
BstDEI CTNAG 4 cut(s) 184, 692, 951, 1116
BstDSI CCRYGG 1 cut(s) 360
BstF5I GGATG 3 cut(s) 547, 1037, 1096
BstFNI CGCG 1 cut(s) 100
BstH2I RGCGCY 1 cut(s) 414
BstHHI GCGC 2 cut(s) 413, 918
BstKTI GATC 7 cut(s) 48, 229, 313, 378, 1060, 1276, 1306
BstMAI GTCTC 2 cut(s) 526, 625
BstMBI GATC 7 cut(s) 45, 226, 310, 375, 1057, 1273, 1303
BstMWI GCNNNNNNNGC 5 cut(s) 722, 909, 915, 1082, 1208
BstNI CCWGG 1 cut(s) 127
BstNSI RCATGY 2 cut(s) 888, 903
BstSCI CCNGG 4 cut(s) 125, 160, 471, 472
BstSFI CTRYAG 1 cut(s) 960
BstUI CGCG 1 cut(s) 100
BstV1I GCAGC 7 cut(s) 45, 437, 700, 791, 862, 921, 1198
BstX2I RGATCY 1 cut(s) 1057
BstXI CCANNNNNNTGG 1 cut(s) 367
BstYI RGATCY 1 cut(s) 1057
Bsu36I CCTNAGG 1 cut(s) 184
BsuI GTATCC 2 cut(s) 1012, 1231
BsuRI GGCC 2 cut(s) 293, 1076
BtgI CCRYGG 1 cut(s) 360
BtsCI GGATG 3 cut(s) 547, 1037, 1096
BtsIMutI CAGTG 5 cut(s) 123, 251, 266, 678, 918
Cac8I GCNNGC 3 cut(s) 38, 747, 914
CaiI CAGNNNCTG 1 cut(s) 1067
CfoI GCGC 2 cut(s) 413, 918
Cfr13I GGNCC 3 cut(s) 179, 291, 1074
Cfr9I CCCGGG 1 cut(s) 472
CspCI CAANNNNNGTGG 2 cut(s) 843, 878
CviAII CATG 6 cut(s) 22, 361, 457, 885, 900, 1307
DdeI CTNAG 4 cut(s) 184, 692, 951, 1116
DpnI GATC 7 cut(s) 47, 228, 312, 377, 1059, 1275, 1305
DpnII GATC 7 cut(s) 45, 226, 310, 375, 1057, 1273, 1303
DrdI GACNNNNNNGTC 1 cut(s) 1014
DseDI GACNNNNNNGTC 1 cut(s) 1014
Eam1104I CTCTTC 5 cut(s) 162, 167, 358, 1036, 1217
EarI CTCTTC 5 cut(s) 162, 167, 358, 1036, 1217
Ecl136II GAGCTC 1 cut(s) 138
Eco130I CCWWGG 1 cut(s) 360
Eco24I GRGCYC 2 cut(s) 81, 140
Eco47I GGWCC 1 cut(s) 179
Eco53kI GAGCTC 1 cut(s) 138
Eco57I CTGAAG 3 cut(s) 62, 280, 1241
Eco81I CCTNAGG 1 cut(s) 184
Eco88I CYCGRG 1 cut(s) 472
EcoICRI GAGCTC 1 cut(s) 138
EcoO109I RGGNCCY 1 cut(s) 179
EcoRI GAATTC 2 cut(s) 262, 637
EcoRII CCWGG 1 cut(s) 125
EcoT14I CCWWGG 1 cut(s) 360
EcoT38I GRGCYC 2 cut(s) 81, 140
ErhI CCWWGG 1 cut(s) 360
FaeI CATG 6 cut(s) 25, 364, 460, 888, 903, 1310
FalI AAGNNNNNCTT 4 cut(s) 1214, 1246, 1269, 1301
FaqI GGGAC 3 cut(s) 192, 203, 1092
FatI CATG 6 cut(s) 21, 360, 456, 884, 899, 1306
FauNDI CATATG 2 cut(s) 1044, 1103
FbaI TGATCA 1 cut(s) 1273
Fnu4HI GCNGC 7 cut(s) 34, 426, 714, 805, 851, 910, 1212
FokI GGATG 3 cut(s) 554, 1024, 1103
FriOI GRGCYC 2 cut(s) 81, 140
Fsp4HI GCNGC 7 cut(s) 34, 426, 714, 805, 851, 910, 1212
FspBI CTAG 1 cut(s) 837
FspI TGCGCA 1 cut(s) 917
GlaI GCGC 2 cut(s) 412, 917
GluI GCNGC 7 cut(s) 34, 426, 714, 805, 851, 910, 1212
GsuI CTGGAG 2 cut(s) 435, 1170
HaeII RGCGCY 1 cut(s) 414
HaeIII GGCC 2 cut(s) 293, 1076
HapII CCGG 3 cut(s) 161, 473, 1005
HhaI GCGC 2 cut(s) 413, 918
Hin1II CATG 6 cut(s) 25, 364, 460, 888, 903, 1310
Hin6I GCGC 2 cut(s) 411, 916
HinP1I GCGC 2 cut(s) 411, 916
HindIII AAGCTT 1 cut(s) 859
HinfI GANTC 4 cut(s) 284, 553, 1064, 1225
HpaII CCGG 3 cut(s) 161, 473, 1005
HphI GGTGA 2 cut(s) 746, 1182
Hpy188I TCNGA 9 cut(s) 204, 261, 299, 437, 492, 663, 952, 1057, 1069
Hpy188III TCNNGA 8 cut(s) 332, 760, 783, 837, 1005, 1061, 1088, 1149
HpyAV CCTTC 3 cut(s) 232, 304, 562
HpyCH4III ACNGT 2 cut(s) 118, 757
HpyCH4V TGCA 7 cut(s) 60, 146, 725, 845, 909, 1214, 1310
HpyF10VI GCNNNNNNNGC 5 cut(s) 722, 909, 915, 1082, 1208
HpyF3I CTNAG 4 cut(s) 184, 692, 951, 1116
Hsp92II CATG 6 cut(s) 25, 364, 460, 888, 903, 1310
HspAI GCGC 2 cut(s) 411, 916
KflI GGGWCCC 1 cut(s) 179
Kpn2I TCCGGA 1 cut(s) 1004
Ksp22I TGATCA 1 cut(s) 1273
Kzo9I GATC 7 cut(s) 45, 226, 310, 375, 1057, 1273, 1303
LguI GCTCTTC 1 cut(s) 1036
LmnI GCTCC 4 cut(s) 205, 710, 935, 1161
Lsp1109I GCAGC 7 cut(s) 45, 437, 700, 791, 862, 921, 1198
LweI GCATC 2 cut(s) 896, 1129
MaeI CTAG 1 cut(s) 837
MaeIII GTNAC 3 cut(s) 101, 938, 1132
MalI GATC 7 cut(s) 47, 228, 312, 377, 1059, 1275, 1305
MboI GATC 7 cut(s) 45, 226, 310, 375, 1057, 1273, 1303
MflI RGATCY 1 cut(s) 1057
MhlI GDGCHC 5 cut(s) 81, 140, 251, 1087, 1166
MluCI AATT 7 cut(s) 50, 255, 262, 327, 397, 586, 637
MlyI GAGTC 4 cut(s) 278, 562, 1073, 1234
MmeI TCCRAC 1 cut(s) 688
MnlI CCTC 9 cut(s) 168, 190, 193, 701, 730, 794, 943, 948, 1087
MroI TCCGGA 1 cut(s) 1004
MseI TTAA 1 cut(s) 603
MslI CAYNNNNRTG 1 cut(s) 904
MspA1I CMGCKG 1 cut(s) 428
MspI CCGG 3 cut(s) 161, 473, 1005
MspR9I CCNGG 4 cut(s) 127, 162, 473, 474
MvaI CCWGG 1 cut(s) 127
MvnI CGCG 1 cut(s) 100
MwoI GCNNNNNNNGC 5 cut(s) 722, 909, 915, 1082, 1208
NciI CCSGG 3 cut(s) 162, 473, 474
NcoI CCATGG 1 cut(s) 360
NdeI CATATG 2 cut(s) 1044, 1103
NdeII GATC 7 cut(s) 45, 226, 310, 375, 1057, 1273, 1303
NlaIII CATG 6 cut(s) 25, 364, 460, 888, 903, 1310
NlaIV GGNNCC 4 cut(s) 180, 181, 201, 1075
NmuCI GTSAC 3 cut(s) 101, 938, 1132
NsbI TGCGCA 1 cut(s) 917
NspI RCATGY 2 cut(s) 888, 903
PciI ACATGT 1 cut(s) 884
PciSI GCTCTTC 1 cut(s) 1036
PkrI GCNGC 7 cut(s) 35, 427, 715, 806, 852, 911, 1213
PleI GAGTC 4 cut(s) 278, 561, 1072, 1233
PpsI GAGTC 4 cut(s) 278, 561, 1072, 1233
PpuMI RGGWCCY 1 cut(s) 179
PscI ACATGT 1 cut(s) 884
Psp124BI GAGCTC 1 cut(s) 140
Psp5II RGGWCCY 1 cut(s) 179
Psp6I CCWGG 1 cut(s) 125
PspGI CCWGG 1 cut(s) 125
PspN4I GGNNCC 4 cut(s) 180, 181, 201, 1075
PspPI GGNCC 3 cut(s) 179, 291, 1074
PspPPI RGGWCCY 1 cut(s) 179
PstNI CAGNNNCTG 1 cut(s) 1067
PsuI RGATCY 1 cut(s) 1057
PvuII CAGCTG 1 cut(s) 428
RseI CAYNNNNRTG 1 cut(s) 904
SacI GAGCTC 1 cut(s) 140
SapI GCTCTTC 1 cut(s) 1036
SaqAI TTAA 1 cut(s) 603
SatI GCNGC 7 cut(s) 34, 426, 714, 805, 851, 910, 1212
Sau3AI GATC 7 cut(s) 45, 226, 310, 375, 1057, 1273, 1303
Sau96I GGNCC 3 cut(s) 179, 291, 1074
SchI GAGTC 4 cut(s) 278, 562, 1073, 1234
ScrFI CCNGG 4 cut(s) 127, 162, 473, 474
SduI GDGCHC 5 cut(s) 81, 140, 251, 1087, 1166
SfaNI GCATC 2 cut(s) 896, 1129
SfcI CTRYAG 1 cut(s) 960
SinI GGWCC 1 cut(s) 179
SmaI CCCGGG 1 cut(s) 474
SmiMI CAYNNNNRTG 1 cut(s) 904
SmlI CTYRAG 1 cut(s) 934
SmoI CTYRAG 1 cut(s) 934
Sse9I AATT 7 cut(s) 50, 255, 262, 327, 397, 586, 637
SsiI CCGC 1 cut(s) 1235
SspMI CTAG 1 cut(s) 837
SstI GAGCTC 1 cut(s) 140
StyD4I CCNGG 4 cut(s) 125, 160, 471, 472
StyI CCWWGG 1 cut(s) 360
TaaI ACNGT 2 cut(s) 118, 757
TaqI TCGA 1 cut(s) 566
TasI AATT 7 cut(s) 50, 255, 262, 327, 397, 586, 637
Tru1I TTAA 1 cut(s) 603
Tru9I TTAA 1 cut(s) 603
TscAI CASTG 5 cut(s) 123, 251, 273, 678, 925
TseFI GTSAC 3 cut(s) 101, 938, 1132
TseI GCWGC 7 cut(s) 33, 425, 713, 804, 850, 909, 1211
Tsp45I GTSAC 3 cut(s) 101, 938, 1132
TspDTI ATGAA 2 cut(s) 476, 539
TspGWI ACGGA 1 cut(s) 1196
TspMI CCCGGG 1 cut(s) 472
TspRI CASTG 5 cut(s) 123, 251, 273, 678, 925
VpaK11BI GGWCC 1 cut(s) 179
XapI RAATTY 6 cut(s) 50, 262, 327, 397, 586, 637
XbaI TCTAGA 1 cut(s) 836
XceI RCATGY 2 cut(s) 888, 903
XmaI CCCGGG 1 cut(s) 472
XspI CTAG 1 cut(s) 837
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.