FvH4_3g06490

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0006276
Physical Location & Seq
Forward (+)
3723568 .. 3727901
4334 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g06490.t2

Sequence Viewer

Length: 1671 bp
ATGATTGCCACAGAAACAACCATGTTTTCGGGCAACAAGTTGAAGATCAAATTTTCCTGCAAAAGAGTAGAAGCTGAGGTTGGGAAAGTAGTAGAATCCGATGATGGGAAAGTGTCGCGTGACTTTGGGGATACAGTGTCTGCCAAGAGTTTGAGCTCTGTTGCACAATCTTCTCTCTCGGGTGGGAAGAAGAGGGGACCCCAAGGGGATATTGAGGCTCCGAGAGAGAAGAAGCTGAAGATGGATCGTAAATTGAAGAGTCAGTGTTCGACAATTCTGAATACACTGATTTCTCATAAGGACTCTTGGGCTTTCCGAACACCAGTTGATCCTGTTGAGCTACAAATTCCTGATTATTTTGATGTCATCTCTTCTCCCATGGATTTGGGAACAATTAAATTAAAGCTGGATAGGAATTTGTATTTTGGCGCTGGAGAGTTCGCATCTGATGTCAGGTTGACCTTTTCTAATGCCATGCTCTATAATCCTCCGGGCAATCCTTTTCATCAGATGGCAAAAGACTTAAATACAAAGTTTGAGATGAAATGGAGTCTTCTGGATGTGAAGTGGAGTCAGGGAAGCTCAAAGGTTGACAAAGGGGAAAATTCGTGTGGGCATATTAAGAAAATATCTGAAATAACTGATAGGAGACTGAATTCCCATCAATCTACTCCGTTTCAGAATGTATCAGTGACCAAAAGCTCAGTCCCATGCAAAGAGAATGGTGGAACTCTTGGTGCAAGTGATAGTGAGGTCAAGCTTGCCAAAACAGTCAAGTTCTCTACTGCAAAAGTGACGGGAAAGAACATTGATAGAGGCTGCAATAGTGGTGGCAGCCATTCTTCTGGCTCTAGAAGTGCAAAGCAGCTACCAAGCTTGGTTGGTAGCAAATGTAGAACATGTTGCAACATTACATGCCAATGCAGTCTACGCACTGAAAATCACTCAAGTGACATATCTCCTGAGAGGTCATTAGGCAAAGAACAAAATCATCAGTTGTCTACTGCCTATGTACCCGGACCGGATTGTCAAGCAAAAAGCTCTTCCACATCCCATATGAGAAAGTCAGATCCAGAGTCTGATGGGGCAGTAAGTGCTCTGGATGAGGAAACCATGTGCCCCAGTTCTCATCTCACAACCCCTGTCACTGATGCTACTTCTGGAGAAGAATGGAGCACTCCTATCTTTAGTGTTCCACTATCACCAAAAAAGGCTCTCCGTGCTGCCATGCTGAAGAGTCGCTTTGCGGATACTATTTTGAAAGCTCAACAGAAAAGTCTTCTTGATCAAGGTAATAGAAGTGATCCACTGAAGATGCAACAAGAGAAGGCAAGATTAGAGCGTAAGCAACGTGAAGAGAAGGCAAAGATTGAAGCTGAAATAAGAGCCGCGGAAGCTGCTGCACAAAAGCAGGCTGAGCTTGAATTGAAGGAGCGACAAGAAAGAGAAAGAGAAGAAGCTCGTCTTGCACTTGAAAAGGTGGAGAGGACTGTCGTTTTTGAGCAGAACTGCTATATCCTTGAGGAACTTAAAAAGTTAGCCGGGTATCATGGTGGCTCTTGGGGATCACACTTCCGATCACCACTGGAGCGACTTGGTTTGTTTATCAAGGACGAGTATACAGTAGATGTTGATGAATTGGAGGAAGGGGAAGAAGGGGAGATTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromodomain

Protein Analysis

557

Amino Acids

61.46

Weight (kDa)

8.27

Isoelectric Point (pI)

39.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 89 - 173 2.3e-19 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1026
AccI GTMKAC 3 cut(s) 928, 1001, 1619
AccII CGCG 2 cut(s) 118, 1391
AciI CCGC 3 cut(s) 1247, 1389, 1391
AclWI GGATC 5 cut(s) 252, 323, 1064, 1298, 1573
AcsI RAATTY 5 cut(s) 50, 345, 415, 604, 655
AcuI CTGAAG 3 cut(s) 257, 1253, 1331
AfaI GTAC 1 cut(s) 1014
AfiI CCNNNNNNNGG 1 cut(s) 105
AflIII ACRYGT 1 cut(s) 899
AgsI TTSAA 7 cut(s) 43, 256, 1261, 1373, 1424, 1429, 1475
AjuI GAANNNNNNNTTGG 2 cut(s) 63, 95
AleI CACNNNNGTG 1 cut(s) 948
Alw21I GWGCWC 3 cut(s) 158, 1099, 1178
Alw26I GTCTC 1 cut(s) 643
AlwI GGATC 5 cut(s) 252, 323, 1064, 1298, 1573
AlwNI CAGNNNCTG 2 cut(s) 140, 1079
Ama87I CYCGRG 1 cut(s) 178
ApeKI GCWGC 6 cut(s) 819, 834, 865, 1223, 1397, 1400
ApoI RAATTY 5 cut(s) 50, 345, 415, 604, 655
ArsI GACNNNNNNTTYG 2 cut(s) 690, 722
AspLEI GCGC 1 cut(s) 431
AspS9I GGNCC 2 cut(s) 197, 1019
AsuC2I CCSGG 3 cut(s) 492, 1017, 1543
AsuHPI GGTGA 2 cut(s) 1194, 1572
AvaI CYCGRG 1 cut(s) 178
AvaII GGWCC 2 cut(s) 197, 1019
BaeGI GKGCMC 1 cut(s) 1121
BanII GRGCYC 1 cut(s) 158
BbsI GAAGAC 2 cut(s) 545, 1271
Bbv12I GWGCWC 3 cut(s) 158, 1099, 1178
BbvCI CCTCAGC 1 cut(s) 75
BbvI GCAGC 6 cut(s) 806, 846, 877, 1210, 1384, 1387
BccI CCATC 5 cut(s) 98, 235, 505, 669, 1076
BciVI GTATCC 2 cut(s) 124, 1243
BclI TGATCA 1 cut(s) 1285
BcnI CCSGG 3 cut(s) 492, 1017, 1543
BcoDI GTCTC 1 cut(s) 643
BfaI CTAG 1 cut(s) 852
BfoI RGCGCY 1 cut(s) 432
BfuI GTATCC 2 cut(s) 124, 1243
BisI GCNGC 7 cut(s) 820, 835, 866, 1224, 1389, 1398, 1401
BlpI GCTNAGC 1 cut(s) 1416
BlsI GCNGC 7 cut(s) 821, 836, 867, 1225, 1390, 1399, 1402
Bme1390I CCNGG 3 cut(s) 492, 1017, 1543
Bme18I GGWCC 2 cut(s) 197, 1019
BmeT110I CYCGRG 1 cut(s) 178
BmgT120I GGNCC 2 cut(s) 197, 1019
BmiI GGNNCC 3 cut(s) 198, 199, 219
BmrFI CCNGG 3 cut(s) 492, 1017, 1543
BmrI ACTGGG 1 cut(s) 1116
BmsI GCATC 3 cut(s) 452, 1141, 1305
BmuI ACTGGG 1 cut(s) 1116
BpiI GAAGAC 2 cut(s) 545, 1271
BpmI CTGGAG 3 cut(s) 453, 1182, 1607
Bpu10I CCTNAGC 1 cut(s) 75
Bpu1102I GCTNAGC 1 cut(s) 1416
BpuEI CTTGAG 2 cut(s) 931, 1541
BpuMI CCSGG 3 cut(s) 492, 1017, 1543
BsaJI CCNNGG 3 cut(s) 202, 378, 1389
BsaWI WCCGGW 1 cut(s) 1021
Bsc4I CCNNNNNNNGG 1 cut(s) 105
Bse1I ACTGG 3 cut(s) 323, 1122, 1590
BseDI CCNNGG 3 cut(s) 202, 378, 1389
BseGI GGATG 3 cut(s) 565, 1049, 1108
BseLI CCNNNNNNNGG 1 cut(s) 105
BseMII CTCAG 4 cut(s) 66, 717, 954, 1407
BseNI ACTGG 3 cut(s) 323, 1122, 1590
BseSI GKGCMC 1 cut(s) 1121
BseXI GCAGC 6 cut(s) 806, 846, 877, 1210, 1384, 1387
BsgI GTGCAG 1 cut(s) 1386
Bsh1236I CGCG 2 cut(s) 118, 1391
BsiHKAI GWGCWC 3 cut(s) 158, 1099, 1178
BsiHKCI CYCGRG 1 cut(s) 178
BsiSI CCGG 4 cut(s) 491, 1017, 1022, 1542
BslFI GGGAC 2 cut(s) 210, 692
BslI CCNNNNNNNGG 1 cut(s) 105
BsmAI GTCTC 1 cut(s) 643
BsmFI GGGAC 2 cut(s) 210, 692
BsoBI CYCGRG 1 cut(s) 178
Bsp1286I GDGCHC 4 cut(s) 158, 1099, 1121, 1178
Bsp143I GATC 8 cut(s) 45, 244, 328, 1069, 1285, 1303, 1565, 1577
Bsp1720I GCTNAGC 1 cut(s) 1416
Bsp19I CCATGG 1 cut(s) 378
BspACI CCGC 3 cut(s) 1247, 1389, 1391
BspCNI CTCAG 4 cut(s) 67, 716, 955, 1408
BspFNI CGCG 2 cut(s) 118, 1391
BspLI GGNNCC 3 cut(s) 198, 199, 219
BspPI GGATC 5 cut(s) 252, 323, 1064, 1298, 1573
BspQI GCTCTTC 1 cut(s) 1048
BsrI ACTGG 3 cut(s) 323, 1122, 1590
BssECI CCNNGG 3 cut(s) 202, 378, 1389
BssMI GATC 8 cut(s) 45, 244, 328, 1069, 1285, 1303, 1565, 1577
BssNAI GTATAC 1 cut(s) 1620
BssT1I CCWWGG 2 cut(s) 202, 378
Bst1107I GTATAC 1 cut(s) 1620
Bst4CI ACNGT 4 cut(s) 136, 772, 1492, 1624
Bst6I CTCTTC 6 cut(s) 185, 251, 376, 1048, 1229, 1350
BstAPI GCANNNNNTGC 1 cut(s) 1094
BstC8I GCNNGC 2 cut(s) 762, 1413
BstDEI CTNAG 4 cut(s) 75, 703, 963, 1416
BstDSI CCRYGG 2 cut(s) 378, 1389
BstF5I GGATG 3 cut(s) 565, 1049, 1108
BstFNI CGCG 2 cut(s) 118, 1391
BstH2I RGCGCY 1 cut(s) 432
BstHHI GCGC 1 cut(s) 431
BstKTI GATC 8 cut(s) 48, 247, 331, 1072, 1288, 1306, 1568, 1580
BstMAI GTCTC 1 cut(s) 643
BstMBI GATC 8 cut(s) 45, 244, 328, 1069, 1285, 1303, 1565, 1577
BstMWI GCNNNNNNNGC 7 cut(s) 930, 1094, 1220, 1394, 1397, 1417, 1466
BstNSI RCATGY 2 cut(s) 903, 918
BstSCI CCNGG 3 cut(s) 490, 1015, 1541
BstSLI GKGCMC 1 cut(s) 1121
BstUI CGCG 2 cut(s) 118, 1391
BstV1I GCAGC 6 cut(s) 806, 846, 877, 1210, 1384, 1387
BstV2I GAAGAC 2 cut(s) 545, 1271
BstX2I RGATCY 1 cut(s) 1069
BstXI CCANNNNNNTGG 2 cut(s) 385, 845
BstYI RGATCY 1 cut(s) 1069
BstZ17I GTATAC 1 cut(s) 1620
BsuI GTATCC 2 cut(s) 124, 1243
BtgI CCRYGG 2 cut(s) 378, 1389
BtsCI GGATG 3 cut(s) 565, 1049, 1108
BtsIMutI CAGTG 8 cut(s) 141, 269, 284, 696, 933, 1146, 1307, 1583
Cac8I GCNNGC 2 cut(s) 762, 1413
CaiI CAGNNNCTG 2 cut(s) 140, 1079
CfoI GCGC 1 cut(s) 431
Cfr13I GGNCC 2 cut(s) 197, 1019
Cfr42I CCGCGG 1 cut(s) 1392
CpoI CGGWCCG 1 cut(s) 1019
Csp6I GTAC 1 cut(s) 1013
CspCI CAANNNNNGTGG 2 cut(s) 811, 846
CspI CGGWCCG 1 cut(s) 1019
CviAII CATG 9 cut(s) 22, 379, 475, 711, 900, 915, 1114, 1228, 1550
CviQI GTAC 1 cut(s) 1013
DdeI CTNAG 4 cut(s) 75, 703, 963, 1416
DpnI GATC 8 cut(s) 47, 246, 330, 1071, 1287, 1305, 1567, 1579
DpnII GATC 8 cut(s) 45, 244, 328, 1069, 1285, 1303, 1565, 1577
DrdI GACNNNNNNGTC 1 cut(s) 1026
DseDI GACNNNNNNGTC 1 cut(s) 1026
Eam1104I CTCTTC 6 cut(s) 185, 251, 376, 1048, 1229, 1350
EarI CTCTTC 6 cut(s) 185, 251, 376, 1048, 1229, 1350
Ecl136II GAGCTC 1 cut(s) 156
Eco130I CCWWGG 2 cut(s) 202, 378
Eco24I GRGCYC 1 cut(s) 158
Eco47I GGWCC 2 cut(s) 197, 1019
Eco53kI GAGCTC 1 cut(s) 156
Eco57I CTGAAG 3 cut(s) 257, 1253, 1331
Eco88I CYCGRG 1 cut(s) 178
EcoICRI GAGCTC 1 cut(s) 156
EcoO109I RGGNCCY 1 cut(s) 197
EcoRI GAATTC 1 cut(s) 655
EcoT14I CCWWGG 2 cut(s) 202, 378
EcoT38I GRGCYC 1 cut(s) 158
ErhI CCWWGG 2 cut(s) 202, 378
FaeI CATG 9 cut(s) 25, 382, 478, 714, 903, 918, 1117, 1231, 1553
FalI AAGNNNNNCTT 4 cut(s) 1226, 1258, 1449, 1481
FaqI GGGAC 2 cut(s) 210, 692
FatI CATG 9 cut(s) 21, 378, 474, 710, 899, 914, 1113, 1227, 1549
FauNDI CATATG 1 cut(s) 1056
FbaI TGATCA 1 cut(s) 1285
FblI GTMKAC 3 cut(s) 928, 1001, 1619
Fnu4HI GCNGC 7 cut(s) 820, 835, 866, 1224, 1389, 1398, 1401
FokI GGATG 3 cut(s) 572, 1036, 1115
FriOI GRGCYC 1 cut(s) 158
Fsp4HI GCNGC 7 cut(s) 820, 835, 866, 1224, 1389, 1398, 1401
FspBI CTAG 1 cut(s) 852
GlaI GCGC 1 cut(s) 430
GluI GCNGC 7 cut(s) 820, 835, 866, 1224, 1389, 1398, 1401
GsuI CTGGAG 3 cut(s) 453, 1182, 1607
HaeII RGCGCY 1 cut(s) 432
HapII CCGG 4 cut(s) 491, 1017, 1022, 1542
HhaI GCGC 1 cut(s) 431
Hin1II CATG 9 cut(s) 25, 382, 478, 714, 903, 918, 1117, 1231, 1553
Hin6I GCGC 1 cut(s) 429
HinP1I GCGC 1 cut(s) 429
HincII GTYRAC 2 cut(s) 459, 592
HindII GTYRAC 2 cut(s) 459, 592
HindIII AAGCTT 2 cut(s) 758, 874
HinfI GANTC 7 cut(s) 95, 259, 302, 550, 571, 1076, 1237
HpaII CCGG 4 cut(s) 491, 1017, 1022, 1542
HphI GGTGA 2 cut(s) 1194, 1572
Hpy166II GTNNAC 5 cut(s) 459, 592, 929, 1002, 1620
Hpy188III TCNNGA 8 cut(s) 350, 557, 852, 962, 1073, 1100, 1161, 1283
Hpy8I GTNNAC 5 cut(s) 459, 592, 929, 1002, 1620
HpyAV CCTTC 5 cut(s) 1321, 1354, 1423, 1640, 1649
HpyCH4III ACNGT 4 cut(s) 136, 772, 1492, 1624
HpyCH4IV ACGT 1 cut(s) 1351
HpyF10VI GCNNNNNNNGC 7 cut(s) 930, 1094, 1220, 1394, 1397, 1417, 1466
HpyF3I CTNAG 4 cut(s) 75, 703, 963, 1416
HpySE526I ACGT 1 cut(s) 1351
Hsp92II CATG 9 cut(s) 25, 382, 478, 714, 903, 918, 1117, 1231, 1553
HspAI GCGC 1 cut(s) 429
KflI GGGWCCC 1 cut(s) 197
Ksp22I TGATCA 1 cut(s) 1285
KspI CCGCGG 1 cut(s) 1392
Kzo9I GATC 8 cut(s) 45, 244, 328, 1069, 1285, 1303, 1565, 1577
LguI GCTCTTC 1 cut(s) 1048
LmnI GCTCC 4 cut(s) 223, 1173, 1432, 1588
Lsp1109I GCAGC 6 cut(s) 806, 846, 877, 1210, 1384, 1387
LweI GCATC 3 cut(s) 452, 1141, 1305
MaeI CTAG 1 cut(s) 852
MaeII ACGT 1 cut(s) 1351
MaeIII GTNAC 5 cut(s) 119, 691, 793, 950, 1144
MalI GATC 8 cut(s) 47, 246, 330, 1071, 1287, 1305, 1567, 1579
MboI GATC 8 cut(s) 45, 244, 328, 1069, 1285, 1303, 1565, 1577
MflI RGATCY 1 cut(s) 1069
MhlI GDGCHC 4 cut(s) 158, 1099, 1121, 1178
MlyI GAGTC 6 cut(s) 268, 296, 559, 580, 1085, 1246
MseI TTAA 5 cut(s) 396, 401, 524, 621, 1530
MslI CAYNNNNRTG 2 cut(s) 919, 948
MspA1I CMGCKG 1 cut(s) 1391
MspI CCGG 4 cut(s) 491, 1017, 1022, 1542
MspR9I CCNGG 3 cut(s) 492, 1017, 1543
MvnI CGCG 2 cut(s) 118, 1391
MwoI GCNNNNNNNGC 7 cut(s) 930, 1094, 1220, 1394, 1397, 1417, 1466
NciI CCSGG 3 cut(s) 492, 1017, 1543
NcoI CCATGG 1 cut(s) 378
NdeI CATATG 1 cut(s) 1056
NdeII GATC 8 cut(s) 45, 244, 328, 1069, 1285, 1303, 1565, 1577
NlaIII CATG 9 cut(s) 25, 382, 478, 714, 903, 918, 1117, 1231, 1553
NlaIV GGNNCC 3 cut(s) 198, 199, 219
NmuCI GTSAC 5 cut(s) 119, 691, 793, 950, 1144
NspI RCATGY 2 cut(s) 903, 918
OliI CACNNNNGTG 1 cut(s) 948
PciI ACATGT 1 cut(s) 899
PciSI GCTCTTC 1 cut(s) 1048
PfeI GAWTC 1 cut(s) 95
PkrI GCNGC 7 cut(s) 821, 836, 867, 1225, 1390, 1399, 1402
PleI GAGTC 6 cut(s) 267, 296, 558, 579, 1084, 1245
PpsI GAGTC 6 cut(s) 267, 296, 558, 579, 1084, 1245
PpuMI RGGWCCY 1 cut(s) 197
PscI ACATGT 1 cut(s) 899
Psp124BI GAGCTC 1 cut(s) 158
Psp5II RGGWCCY 1 cut(s) 197
PspN4I GGNNCC 3 cut(s) 198, 199, 219
PspPI GGNCC 2 cut(s) 197, 1019
PspPPI RGGWCCY 1 cut(s) 197
PstNI CAGNNNCTG 2 cut(s) 140, 1079
PsuI RGATCY 1 cut(s) 1069
RsaI GTAC 1 cut(s) 1014
RsaNI GTAC 1 cut(s) 1013
RseI CAYNNNNRTG 2 cut(s) 919, 948
Rsr2I CGGWCCG 1 cut(s) 1019
RsrII CGGWCCG 1 cut(s) 1019
SacI GAGCTC 1 cut(s) 158
SacII CCGCGG 1 cut(s) 1392
SapI GCTCTTC 1 cut(s) 1048
SaqAI TTAA 5 cut(s) 396, 401, 524, 621, 1530
SatI GCNGC 7 cut(s) 820, 835, 866, 1224, 1389, 1398, 1401
Sau3AI GATC 8 cut(s) 45, 244, 328, 1069, 1285, 1303, 1565, 1577
Sau96I GGNCC 2 cut(s) 197, 1019
SchI GAGTC 6 cut(s) 268, 296, 559, 580, 1085, 1246
ScrFI CCNGG 3 cut(s) 492, 1017, 1543
SduI GDGCHC 4 cut(s) 158, 1099, 1121, 1178
SfaNI GCATC 3 cut(s) 452, 1141, 1305
Sfr303I CCGCGG 1 cut(s) 1392
SgrBI CCGCGG 1 cut(s) 1392
SinI GGWCC 2 cut(s) 197, 1019
SmiMI CAYNNNNRTG 2 cut(s) 919, 948
SmlI CTYRAG 2 cut(s) 946, 1520
SmoI CTYRAG 2 cut(s) 946, 1520
SsiI CCGC 3 cut(s) 1247, 1389, 1391
SspMI CTAG 1 cut(s) 852
SstI GAGCTC 1 cut(s) 158
StyD4I CCNGG 3 cut(s) 490, 1015, 1541
StyI CCWWGG 2 cut(s) 202, 378
TaaI ACNGT 4 cut(s) 136, 772, 1492, 1624
TaiI ACGT 1 cut(s) 1354
TaqI TCGA 1 cut(s) 269
TauI GCSGC 1 cut(s) 1391
TfiI GAWTC 1 cut(s) 95
Tru1I TTAA 5 cut(s) 396, 401, 524, 621, 1530
Tru9I TTAA 5 cut(s) 396, 401, 524, 621, 1530
TscAI CASTG 8 cut(s) 141, 269, 291, 696, 940, 1153, 1314, 1590
TseFI GTSAC 5 cut(s) 119, 691, 793, 950, 1144
TseI GCWGC 6 cut(s) 819, 834, 865, 1223, 1397, 1400
Tsp45I GTSAC 5 cut(s) 119, 691, 793, 950, 1144
TspDTI ATGAA 3 cut(s) 494, 557, 1650
TspGWI ACGGA 2 cut(s) 663, 1208
TspRI CASTG 8 cut(s) 141, 269, 291, 696, 940, 1153, 1314, 1590
VpaK11BI GGWCC 2 cut(s) 197, 1019
XapI RAATTY 5 cut(s) 50, 345, 415, 604, 655
XbaI TCTAGA 1 cut(s) 851
XceI RCATGY 2 cut(s) 903, 918
XmiI GTMKAC 3 cut(s) 928, 1001, 1619
XspI CTAG 1 cut(s) 852
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.