Rw5G008570

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0006276
Physical Location & Seq
Reverse (-)
9348454 .. 9351607
3154 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G008570.1

Sequence Viewer

Length: 1659 bp
ATGATTGCCACCGAAACAACCATGTTATCGGGCAGCAAGCTGAAGATCAAATTTTCCTGCAAAAGAATAGAAGTTGAGCCCGATGACGGGAAAGTGTCGCGTGACTTTGGGAATACAGTGTCAGCCAGGGGTTTGAGCTCTGTTGCACAAACTTCTCTCCCGGGTGGTAAGAAGAGGGGACCCTCAGGGGATATTGAGGCTCCGAGAGAGAAGAAGCTGAAGATGGATCGTAAAGTGAAGGGTCAGTGCTCAACAATTCTGAATACACTGATTTCTCATAAGGACTCTTGGGCCTTCAGAAAACCAGTTGATCCTGTTGAGCTACAAATTCCTGATTATTTTGATGTCATCTCTTCTCCCATGGATTTGGGAACGATCAAATCAAAGCTGGACAGAAATTTGTATTTTGGCGCTGGAGAGTTCGCAGCTGATGTCAGATTGACCTTTTCTAATGCCATGCTCTATAATCCCCCGGGCAATCCTTTTCATCAGATGGCAAAAGACCTAAATACAAAGTTTGAGATGAAATGGAGACAAGTGGATGTGAAGTGGAGTCAGGGAAGCTCGAAGGTTGATATGGGGAAAAATTCGTGTGGGCAAGTTAAGAAAATAACTGAAATAACTGATACGAGACTGAATTCCCATAAATCTACTCTGTTTCAGAGTGTATCAGTGTCCAAAAGCCCAGTCCTCAGCAGAGAGAATGTTGGAGCTGCTTTTGGTGCAAGTGATGGTGAGGTAGAGCTTGCCAAAACAGTCAAGAACTCCACTCCAAAAATGTCGGGAAAGAACTTCAATAGAGGCTGCGATAGTGGTGGCAGACAATCTTCTGGCTCTAGAAGTGCAAAGCAGCCACCAAGCTTGGTTGGTAGCAAATGTGGAACATGTGGCAACATTACATGCCGATGCAGCCTGCGCACTGACTATCGCTCCTCAAGTGACATATCTTCTGAGAGGTCTGTAGGCAGAGAACAAAATCATCATTTGTCTATTGCCAATGTATCCGAACTGGATTGTCAAGCAAAAGGCTCTTCTACATCCCATATGAGCAAGTCAGATCCAGAGTCTGATGGGGCCGTAAGTGCTCTGGATGAGGAAACCATATGTCCCAGTTCTCAGCTTACAACCCCAGTCACAGATGCTGCTTCTGGAGAAGAATGGAGCACACCTATTTTTAGTGTTCCACTATCACCAAAAAAGGCTCTCCGTGCTGCAATGCTGAAGAGTCGCTTTGCGGATACTATTTTGAAAGCTCAACAGAAAAGTCTGCTTGATCAAGGTAATAGAAGTGATCCACTGAAGATGCAACAAGAAAAGGCGAGATTAGAGCGGAAGCAGCGTGAAGAGAAGGCAAGGATTGAAGCCGAAATAAGAGCTGCGGAAGCTGCAGCACAAAGGCAGGCTGAGCTTGAATTGAAGGAGCGACAAGAAAGAGAGAGAGAAGAAGCTCGTATTGCCCTTGAAAAGATGGAGAGGACTGTTGTGTTTGAGCAGAATTGCTATATCTTAGAGGAACTTAAAAGATTAGCCGGATATAATGGTGGCTCTTGGGGATCACACTTCCGTTCACCACTGGAGCGACTTGGTTTATTTATCAAGGAAGAGTATACAGTAGATGTTGATGAATTGGAGGAAGGGGAGGAAGGGGAGATTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromodomain

Protein Analysis

552

Amino Acids

60.96

Weight (kDa)

8.58

Isoelectric Point (pI)

44.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 83 - 167 9.3e-21 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 917
AccBSI CCGCTC 1 cut(s) 1330
AccI GTMKAC 1 cut(s) 1607
AccII CGCG 1 cut(s) 100
AciI CCGC 3 cut(s) 1235, 1330, 1379
AclWI GGATC 5 cut(s) 234, 305, 1052, 1286, 1561
AcsI RAATTY 5 cut(s) 50, 327, 397, 586, 637
AcuI CTGAAG 5 cut(s) 62, 239, 280, 1241, 1319
AfiI CCNNNNNNNGG 2 cut(s) 86, 87
AflIII ACRYGT 1 cut(s) 884
AgsI TTSAA 6 cut(s) 796, 1249, 1361, 1412, 1417, 1463
AjnI CCWGG 1 cut(s) 125
Alw21I GWGCWC 4 cut(s) 140, 251, 1087, 1166
Alw26I GTCTC 2 cut(s) 526, 625
AlwI GGATC 5 cut(s) 234, 305, 1052, 1286, 1561
AlwNI CAGNNNCTG 2 cut(s) 1067, 1142
Ama87I CYCGRG 2 cut(s) 160, 472
AoxI GGCC 2 cut(s) 291, 1074
ApoI RAATTY 5 cut(s) 50, 327, 397, 586, 637
ArsI GACNNNNNNTTYG 2 cut(s) 672, 704
AspLEI GCGC 2 cut(s) 413, 918
AspS9I GGNCC 3 cut(s) 179, 291, 1074
AsuC2I CCSGG 4 cut(s) 161, 162, 473, 474
AsuHPI GGTGA 3 cut(s) 746, 1182, 1560
AvaI CYCGRG 2 cut(s) 160, 472
AvaII GGWCC 1 cut(s) 179
AxyI CCTNAGG 1 cut(s) 184
BanII GRGCYC 2 cut(s) 81, 140
Bbv12I GWGCWC 4 cut(s) 140, 251, 1087, 1166
BbvCI CCTCAGC 1 cut(s) 692
BccI CCATC 5 cut(s) 217, 487, 725, 1064, 1462
BceAI ACGGC 1 cut(s) 1061
BciT130I CCWGG 1 cut(s) 127
BciVI GTATCC 2 cut(s) 1012, 1231
BclI TGATCA 1 cut(s) 1273
BcnI CCSGG 4 cut(s) 161, 162, 473, 474
BcoDI GTCTC 2 cut(s) 526, 625
BfaI CTAG 1 cut(s) 837
BfmI CTRYAG 2 cut(s) 960, 1386
BfoI RGCGCY 1 cut(s) 414
BfuI GTATCC 2 cut(s) 1012, 1231
BlpI GCTNAGC 1 cut(s) 1404
Bme1390I CCNGG 5 cut(s) 127, 161, 162, 473, 474
Bme18I GGWCC 1 cut(s) 179
BmeT110I CYCGRG 2 cut(s) 160, 472
BmgT120I GGNCC 3 cut(s) 179, 291, 1074
BmiI GGNNCC 4 cut(s) 180, 181, 201, 1075
BmrFI CCNGG 5 cut(s) 127, 161, 162, 473, 474
BmrI ACTGGG 3 cut(s) 680, 1104, 1124
BmsI GCATC 3 cut(s) 896, 1129, 1293
BmuI ACTGGG 3 cut(s) 680, 1104, 1124
BpmI CTGGAG 3 cut(s) 435, 1170, 1595
Bpu10I CCTNAGC 1 cut(s) 692
Bpu1102I GCTNAGC 1 cut(s) 1404
BpuEI CTTGAG 1 cut(s) 919
BpuMI CCSGG 4 cut(s) 161, 162, 473, 474
BsaJI CCNNGG 5 cut(s) 126, 160, 360, 471, 472
BsaXI ACNNNNNCTCC 3 cut(s) 914, 944, 1640
Bsc4I CCNNNNNNNGG 2 cut(s) 86, 87
Bse1I ACTGG 6 cut(s) 305, 686, 1014, 1110, 1130, 1578
Bse21I CCTNAGG 1 cut(s) 184
Bse3DI GCAATG 1 cut(s) 1221
BseBI CCWGG 1 cut(s) 127
BseDI CCNNGG 5 cut(s) 126, 160, 360, 471, 472
BseGI GGATG 3 cut(s) 547, 1037, 1096
BseLI CCNNNNNNNGG 2 cut(s) 86, 87
BseMI GCAATG 1 cut(s) 1221
BseMII CTCAG 5 cut(s) 198, 706, 942, 1130, 1395
BseNI ACTGG 6 cut(s) 305, 686, 1014, 1110, 1130, 1578
BseRI GAGGAG 1 cut(s) 922
Bsh1236I CGCG 1 cut(s) 100
BshFI GGCC 2 cut(s) 293, 1076
BsiHKAI GWGCWC 4 cut(s) 140, 251, 1087, 1166
BsiHKCI CYCGRG 2 cut(s) 160, 472
BsiSI CCGG 3 cut(s) 161, 473, 1530
BslFI GGGAC 2 cut(s) 192, 1092
BslI CCNNNNNNNGG 2 cut(s) 86, 87
BsmAI GTCTC 2 cut(s) 526, 625
BsmFI GGGAC 2 cut(s) 192, 1092
BsnI GGCC 2 cut(s) 293, 1076
BsoBI CYCGRG 2 cut(s) 160, 472
Bsp1286I GDGCHC 5 cut(s) 81, 140, 251, 1087, 1166
Bsp143I GATC 8 cut(s) 45, 226, 310, 375, 1057, 1273, 1291, 1553
Bsp1720I GCTNAGC 1 cut(s) 1404
Bsp19I CCATGG 1 cut(s) 360
BspACI CCGC 3 cut(s) 1235, 1330, 1379
BspANI GGCC 2 cut(s) 293, 1076
BspCNI CTCAG 5 cut(s) 197, 705, 943, 1129, 1396
BspFNI CGCG 1 cut(s) 100
BspLI GGNNCC 4 cut(s) 180, 181, 201, 1075
BspMAI CTGCAG 1 cut(s) 1390
BspPI GGATC 5 cut(s) 234, 305, 1052, 1286, 1561
BspQI GCTCTTC 1 cut(s) 1036
BsrBI CCGCTC 1 cut(s) 1330
BsrDI GCAATG 1 cut(s) 1221
BsrI ACTGG 6 cut(s) 305, 686, 1014, 1110, 1130, 1578
BssECI CCNNGG 5 cut(s) 126, 160, 360, 471, 472
BssMI GATC 8 cut(s) 45, 226, 310, 375, 1057, 1273, 1291, 1553
BssNAI GTATAC 1 cut(s) 1608
BssT1I CCWWGG 1 cut(s) 360
Bst1107I GTATAC 1 cut(s) 1608
Bst2UI CCWGG 1 cut(s) 127
Bst4CI ACNGT 4 cut(s) 118, 757, 1480, 1612
Bst6I CTCTTC 6 cut(s) 167, 358, 1036, 1217, 1338, 1596
BstC8I GCNNGC 4 cut(s) 38, 747, 914, 1401
BstDEI CTNAG 6 cut(s) 184, 692, 951, 1116, 1404, 1507
BstDSI CCRYGG 1 cut(s) 360
BstF5I GGATG 3 cut(s) 547, 1037, 1096
BstFNI CGCG 1 cut(s) 100
BstH2I RGCGCY 1 cut(s) 414
BstHHI GCGC 2 cut(s) 413, 918
BstKTI GATC 8 cut(s) 48, 229, 313, 378, 1060, 1276, 1294, 1556
BstMAI GTCTC 2 cut(s) 526, 625
BstMBI GATC 8 cut(s) 45, 226, 310, 375, 1057, 1273, 1291, 1553
BstNI CCWGG 1 cut(s) 127
BstNSI RCATGY 2 cut(s) 888, 903
BstSCI CCNGG 5 cut(s) 125, 159, 160, 471, 472
BstSFI CTRYAG 2 cut(s) 960, 1386
BstUI CGCG 1 cut(s) 100
BstX2I RGATCY 1 cut(s) 1057
BstXI CCANNNNNNTGG 1 cut(s) 367
BstYI RGATCY 1 cut(s) 1057
BstZ17I GTATAC 1 cut(s) 1608
Bsu36I CCTNAGG 1 cut(s) 184
BsuI GTATCC 2 cut(s) 1012, 1231
BsuRI GGCC 2 cut(s) 293, 1076
BtgI CCRYGG 1 cut(s) 360
BtsCI GGATG 3 cut(s) 547, 1037, 1096
BtsIMutI CAGTG 7 cut(s) 123, 251, 266, 678, 918, 1295, 1571
Cac8I GCNNGC 4 cut(s) 38, 747, 914, 1401
CaiI CAGNNNCTG 2 cut(s) 1067, 1142
CfoI GCGC 2 cut(s) 413, 918
Cfr13I GGNCC 3 cut(s) 179, 291, 1074
Cfr9I CCCGGG 2 cut(s) 160, 472
CspCI CAANNNNNGTGG 2 cut(s) 843, 878
CviAII CATG 5 cut(s) 22, 361, 457, 885, 900
DdeI CTNAG 6 cut(s) 184, 692, 951, 1116, 1404, 1507
DpnI GATC 8 cut(s) 47, 228, 312, 377, 1059, 1275, 1293, 1555
DpnII GATC 8 cut(s) 45, 226, 310, 375, 1057, 1273, 1291, 1553
Eam1104I CTCTTC 6 cut(s) 167, 358, 1036, 1217, 1338, 1596
EarI CTCTTC 6 cut(s) 167, 358, 1036, 1217, 1338, 1596
Ecl136II GAGCTC 1 cut(s) 138
Eco130I CCWWGG 1 cut(s) 360
Eco24I GRGCYC 2 cut(s) 81, 140
Eco47I GGWCC 1 cut(s) 179
Eco53kI GAGCTC 1 cut(s) 138
Eco57I CTGAAG 5 cut(s) 62, 239, 280, 1241, 1319
Eco81I CCTNAGG 1 cut(s) 184
Eco88I CYCGRG 2 cut(s) 160, 472
EcoICRI GAGCTC 1 cut(s) 138
EcoO109I RGGNCCY 1 cut(s) 179
EcoRI GAATTC 1 cut(s) 637
EcoRII CCWGG 1 cut(s) 125
EcoT14I CCWWGG 1 cut(s) 360
EcoT38I GRGCYC 2 cut(s) 81, 140
ErhI CCWWGG 1 cut(s) 360
FaeI CATG 5 cut(s) 25, 364, 460, 888, 903
FalI AAGNNNNNCTT 2 cut(s) 1214, 1246
FaqI GGGAC 2 cut(s) 192, 1092
FatI CATG 5 cut(s) 21, 360, 456, 884, 899
FauNDI CATATG 2 cut(s) 1044, 1103
FbaI TGATCA 1 cut(s) 1273
FblI GTMKAC 1 cut(s) 1607
FokI GGATG 3 cut(s) 554, 1024, 1103
FriOI GRGCYC 2 cut(s) 81, 140
FspBI CTAG 1 cut(s) 837
FspI TGCGCA 1 cut(s) 917
GlaI GCGC 2 cut(s) 412, 917
GsuI CTGGAG 3 cut(s) 435, 1170, 1595
HaeII RGCGCY 1 cut(s) 414
HaeIII GGCC 2 cut(s) 293, 1076
HapII CCGG 3 cut(s) 161, 473, 1530
HhaI GCGC 2 cut(s) 413, 918
Hin1II CATG 5 cut(s) 25, 364, 460, 888, 903
Hin6I GCGC 2 cut(s) 411, 916
HinP1I GCGC 2 cut(s) 411, 916
HindIII AAGCTT 1 cut(s) 859
HinfI GANTC 4 cut(s) 284, 553, 1064, 1225
HpaII CCGG 3 cut(s) 161, 473, 1530
HphI GGTGA 3 cut(s) 746, 1182, 1560
Hpy166II GTNNAC 2 cut(s) 1568, 1608
Hpy188III TCNNGA 7 cut(s) 332, 760, 783, 837, 1061, 1088, 1149
Hpy8I GTNNAC 2 cut(s) 1568, 1608
HpyAV CCTTC 7 cut(s) 232, 304, 562, 1342, 1411, 1628, 1637
HpyCH4III ACNGT 4 cut(s) 118, 757, 1480, 1612
HpyCH4V TGCA 8 cut(s) 60, 146, 725, 845, 909, 1214, 1306, 1388
HpyF3I CTNAG 6 cut(s) 184, 692, 951, 1116, 1404, 1507
Hsp92II CATG 5 cut(s) 25, 364, 460, 888, 903
HspAI GCGC 2 cut(s) 411, 916
KflI GGGWCCC 1 cut(s) 179
Ksp22I TGATCA 1 cut(s) 1273
Kzo9I GATC 8 cut(s) 45, 226, 310, 375, 1057, 1273, 1291, 1553
LguI GCTCTTC 1 cut(s) 1036
LmnI GCTCC 6 cut(s) 205, 710, 935, 1161, 1420, 1576
LweI GCATC 3 cut(s) 896, 1129, 1293
MaeI CTAG 1 cut(s) 837
MaeIII GTNAC 3 cut(s) 101, 938, 1132
MalI GATC 8 cut(s) 47, 228, 312, 377, 1059, 1275, 1293, 1555
MbiI CCGCTC 1 cut(s) 1330
MboI GATC 8 cut(s) 45, 226, 310, 375, 1057, 1273, 1291, 1553
MflI RGATCY 1 cut(s) 1057
MhlI GDGCHC 5 cut(s) 81, 140, 251, 1087, 1166
MluCI AATT 9 cut(s) 50, 255, 327, 397, 586, 637, 1412, 1495, 1625
MlyI GAGTC 4 cut(s) 278, 562, 1073, 1234
MmeI TCCRAC 1 cut(s) 688
MseI TTAA 2 cut(s) 603, 1518
MslI CAYNNNNRTG 1 cut(s) 904
MspA1I CMGCKG 1 cut(s) 428
MspI CCGG 3 cut(s) 161, 473, 1530
MspR9I CCNGG 5 cut(s) 127, 161, 162, 473, 474
MvaI CCWGG 1 cut(s) 127
MvnI CGCG 1 cut(s) 100
NciI CCSGG 4 cut(s) 161, 162, 473, 474
NcoI CCATGG 1 cut(s) 360
NdeI CATATG 2 cut(s) 1044, 1103
NdeII GATC 8 cut(s) 45, 226, 310, 375, 1057, 1273, 1291, 1553
NlaIII CATG 5 cut(s) 25, 364, 460, 888, 903
NlaIV GGNNCC 4 cut(s) 180, 181, 201, 1075
NmuCI GTSAC 3 cut(s) 101, 938, 1132
NsbI TGCGCA 1 cut(s) 917
NspI RCATGY 2 cut(s) 888, 903
PciI ACATGT 1 cut(s) 884
PciSI GCTCTTC 1 cut(s) 1036
PleI GAGTC 4 cut(s) 278, 561, 1072, 1233
PpsI GAGTC 4 cut(s) 278, 561, 1072, 1233
PpuMI RGGWCCY 1 cut(s) 179
PscI ACATGT 1 cut(s) 884
Psp124BI GAGCTC 1 cut(s) 140
Psp5II RGGWCCY 1 cut(s) 179
Psp6I CCWGG 1 cut(s) 125
PspGI CCWGG 1 cut(s) 125
PspN4I GGNNCC 4 cut(s) 180, 181, 201, 1075
PspPI GGNCC 3 cut(s) 179, 291, 1074
PspPPI RGGWCCY 1 cut(s) 179
PstI CTGCAG 1 cut(s) 1390
PstNI CAGNNNCTG 2 cut(s) 1067, 1142
PsuI RGATCY 1 cut(s) 1057
PvuII CAGCTG 1 cut(s) 428
RseI CAYNNNNRTG 1 cut(s) 904
SacI GAGCTC 1 cut(s) 140
SapI GCTCTTC 1 cut(s) 1036
SaqAI TTAA 2 cut(s) 603, 1518
Sau3AI GATC 8 cut(s) 45, 226, 310, 375, 1057, 1273, 1291, 1553
Sau96I GGNCC 3 cut(s) 179, 291, 1074
SchI GAGTC 4 cut(s) 278, 562, 1073, 1234
ScrFI CCNGG 5 cut(s) 127, 161, 162, 473, 474
SduI GDGCHC 5 cut(s) 81, 140, 251, 1087, 1166
SfaNI GCATC 3 cut(s) 896, 1129, 1293
SfcI CTRYAG 2 cut(s) 960, 1386
SinI GGWCC 1 cut(s) 179
SmaI CCCGGG 2 cut(s) 162, 474
SmiMI CAYNNNNRTG 1 cut(s) 904
SmlI CTYRAG 1 cut(s) 934
SmoI CTYRAG 1 cut(s) 934
Sse9I AATT 9 cut(s) 50, 255, 327, 397, 586, 637, 1412, 1495, 1625
SsiI CCGC 3 cut(s) 1235, 1330, 1379
SspMI CTAG 1 cut(s) 837
SstI GAGCTC 1 cut(s) 140
StyD4I CCNGG 5 cut(s) 125, 159, 160, 471, 472
StyI CCWWGG 1 cut(s) 360
TaaI ACNGT 4 cut(s) 118, 757, 1480, 1612
TaqI TCGA 1 cut(s) 566
TasI AATT 9 cut(s) 50, 255, 327, 397, 586, 637, 1412, 1495, 1625
Tru1I TTAA 2 cut(s) 603, 1518
Tru9I TTAA 2 cut(s) 603, 1518
TscAI CASTG 7 cut(s) 123, 251, 273, 678, 925, 1302, 1578
TseFI GTSAC 3 cut(s) 101, 938, 1132
Tsp45I GTSAC 3 cut(s) 101, 938, 1132
TspDTI ATGAA 3 cut(s) 476, 539, 1638
TspGWI ACGGA 2 cut(s) 1196, 1553
TspMI CCCGGG 2 cut(s) 160, 472
TspRI CASTG 7 cut(s) 123, 251, 273, 678, 925, 1302, 1578
VpaK11BI GGWCC 1 cut(s) 179
XapI RAATTY 5 cut(s) 50, 327, 397, 586, 637
XbaI TCTAGA 1 cut(s) 836
XceI RCATGY 2 cut(s) 888, 903
XmaI CCCGGG 2 cut(s) 160, 472
XmiI GTMKAC 1 cut(s) 1607
XspI CTAG 1 cut(s) 837
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.