Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8165396.1

Orthogroup ID

OG0006276

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 485

Gene Structure 484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8165396.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 220 bp

ctgcgcactgactatcgctcctcaagtgacatatcttctgagaggtctgtaggcagagaacaaaatcatcatttgtctattgccaatgtatccggactggattgtcaagcaaaaggctcttctacatcccatatgagcaagtcagatccagagtctgatggggccgtaagtgctctggatgaggaaaccatatgtcccagttctcagcttacaaccccag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bromodomain

Protein Analysis

73

Amino Acids

7.75

Weight (kDa)

4.87

Isoelectric Point (pI)

59.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46550
fragaria_vesca	FvH4_3g06490 FvH4_3g06490 FvH4_3g06490 FvH4_3g06490 FvH4_3g25510 FvH4_3g25881 FvH4_7g09881
malus_domestica	MD05G1292900.v1.1 MD10G1268800.v1.1
prunus_persica	Prupe.4G072500_v2.0.a1
pyrus_communis	pycom05g26940 pycom10g22530
rosa_chinensis	RchiOBHm_Chr5g0012791
rosa_laevigata	RLG00000031956
rosa_multiflora	Rmu_co8165396.1_g000001 Rmu_sc0006811.1_g000013
rosa_roxburghii	Rroxscaffold_1G00063800
rosa_rugosa	Rorug05G0004000 Rorug05G0004100 Rorug05G0004200.1 Rorug05G0004300
rosa_samantha	Rh5AG098000 Rh5BG095000 Rh5CG106900 Rh5DG093700
rosa_wichuraiana	Rw5G008570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	102
Acc16I	TGCGCA	1 cut(s)	5
AccIII	TCCGGA	1 cut(s)	92
AclWI	GGATC	1 cut(s)	140
AluBI	AGCT	1 cut(s)	208
AluI	AGCT	1 cut(s)	208
Alw21I	GWGCWC	1 cut(s)	175
AlwI	GGATC	1 cut(s)	140
AlwNI	CAGNNNCTG	1 cut(s)	155
Aor13HI	TCCGGA	1 cut(s)	92
AoxI	GGCC	1 cut(s)	162
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	1 cut(s)	162
Bbv12I	GWGCWC	1 cut(s)	175
BccI	CCATC	1 cut(s)	152
BceAI	ACGGC	1 cut(s)	149
BciVI	GTATCC	1 cut(s)	100
BfmI	CTRYAG	1 cut(s)	48
BfuI	GTATCC	1 cut(s)	100
BmgT120I	GGNCC	1 cut(s)	162
BmiI	GGNNCC	1 cut(s)	163
BmrI	ACTGGG	1 cut(s)	192
BmuI	ACTGGG	1 cut(s)	192
BpuEI	CTTGAG	1 cut(s)	7
BsaWI	WCCGGW	1 cut(s)	92
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bse1I	ACTGG	2 cut(s)	102, 198
BseAI	TCCGGA	1 cut(s)	92
BseGI	GGATG	2 cut(s)	125, 184
BseMII	CTCAG	2 cut(s)	30, 218
BseNI	ACTGG	2 cut(s)	102, 198
BseRI	GAGGAG	1 cut(s)	10
BshFI	GGCC	1 cut(s)	164
BsiHKAI	GWGCWC	1 cut(s)	175
BsiSI	CCGG	1 cut(s)	93
BslFI	GGGAC	1 cut(s)	180
BsmFI	GGGAC	1 cut(s)	180
BsnI	GGCC	1 cut(s)	164
Bsp1286I	GDGCHC	1 cut(s)	175
Bsp13I	TCCGGA	1 cut(s)	92
Bsp143I	GATC	1 cut(s)	145
BspANI	GGCC	1 cut(s)	164
BspCNI	CTCAG	2 cut(s)	31, 217
BspEI	TCCGGA	1 cut(s)	92
BspLI	GGNNCC	1 cut(s)	163
BspPI	GGATC	1 cut(s)	140
BspQI	GCTCTTC	1 cut(s)	124
BsrI	ACTGG	2 cut(s)	102, 198
BssMI	GATC	1 cut(s)	145
Bst6I	CTCTTC	1 cut(s)	124
BstDEI	CTNAG	2 cut(s)	39, 204
BstF5I	GGATG	2 cut(s)	125, 184
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	1 cut(s)	148
BstMBI	GATC	1 cut(s)	145
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstSFI	CTRYAG	1 cut(s)	48
BstX2I	RGATCY	1 cut(s)	145
BstYI	RGATCY	1 cut(s)	145
BsuI	GTATCC	1 cut(s)	100
BsuRI	GGCC	1 cut(s)	164
BtsCI	GGATG	2 cut(s)	125, 184
BtsIMutI	CAGTG	1 cut(s)	6
CaiI	CAGNNNCTG	1 cut(s)	155
CfoI	GCGC	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	162
CviJI	RGCY	3 cut(s)	117, 164, 208
CviKI_1	RGCY	3 cut(s)	117, 164, 208
DdeI	CTNAG	2 cut(s)	39, 204
DpnI	GATC	1 cut(s)	147
DpnII	GATC	1 cut(s)	145
DrdI	GACNNNNNNGTC	1 cut(s)	102
DseDI	GACNNNNNNGTC	1 cut(s)	102
Eam1104I	CTCTTC	1 cut(s)	124
EarI	CTCTTC	1 cut(s)	124
FaiI	YATR	5 cut(s)	32, 132, 134, 191, 193
FaqI	GGGAC	1 cut(s)	180
FauNDI	CATATG	2 cut(s)	132, 191
FokI	GGATG	2 cut(s)	112, 191
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	1 cut(s)	5
HaeIII	GGCC	1 cut(s)	164
HapII	CCGG	1 cut(s)	93
HhaI	GCGC	1 cut(s)	6
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HinfI	GANTC	1 cut(s)	152
HpaII	CCGG	1 cut(s)	93
Hpy188I	TCNGA	3 cut(s)	40, 145, 157
Hpy188III	TCNNGA	3 cut(s)	93, 149, 176
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
HpyF3I	CTNAG	2 cut(s)	39, 204
HspAI	GCGC	1 cut(s)	4
Kpn2I	TCCGGA	1 cut(s)	92
Kzo9I	GATC	1 cut(s)	145
LguI	GCTCTTC	1 cut(s)	124
LmnI	GCTCC	1 cut(s)	23
LpnPI	CCDG	5 cut(s)	83, 106, 161, 162, 211
MaeIII	GTNAC	1 cut(s)	26
MalI	GATC	1 cut(s)	147
MboI	GATC	1 cut(s)	145
MboII	GAAGA	2 cut(s)	27, 111
MflI	RGATCY	1 cut(s)	145
MhlI	GDGCHC	1 cut(s)	175
MlyI	GAGTC	1 cut(s)	161
MnlI	CCTC	3 cut(s)	31, 36, 175
MroI	TCCGGA	1 cut(s)	92
MspI	CCGG	1 cut(s)	93
MwoI	GCNNNNNNNGC	1 cut(s)	170
NdeI	CATATG	2 cut(s)	132, 191
NdeII	GATC	1 cut(s)	145
NlaIV	GGNNCC	1 cut(s)	163
NmuCI	GTSAC	1 cut(s)	26
NsbI	TGCGCA	1 cut(s)	5
PciSI	GCTCTTC	1 cut(s)	124
PleI	GAGTC	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	160
PspN4I	GGNNCC	1 cut(s)	163
PspPI	GGNCC	1 cut(s)	162
PstNI	CAGNNNCTG	1 cut(s)	155
PsuI	RGATCY	1 cut(s)	145
SapI	GCTCTTC	1 cut(s)	124
Sau3AI	GATC	1 cut(s)	145
Sau96I	GGNCC	1 cut(s)	162
SchI	GAGTC	1 cut(s)	161
SduI	GDGCHC	1 cut(s)	175
SetI	ASST	2 cut(s)	47, 210
SfcI	CTRYAG	1 cut(s)	48
SgeI	CNNG	8 cut(s)	36, 105, 110, 119, 151, 161, 188, 210
SmlI	CTYRAG	1 cut(s)	22
SmoI	CTYRAG	1 cut(s)	22
TscAI	CASTG	1 cut(s)	13
TseFI	GTSAC	1 cut(s)	26
Tsp45I	GTSAC	1 cut(s)	26
TspRI	CASTG	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.