AT5G47660
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013499
Physical Location & Seq
Forward (+)
19312747 .. 19314893
2147 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G47660.1

Sequence Viewer

Length: 1197 bp
ATGGAACTTCTCGCCGGCGACTGTCGGAAACGAGTCGGCGACGACTTTGAGGAAGATATTAACCCATTCGATGGTTCGGACGGTGGTTGCGGGTGGATGTACGGTACCCGTCAAATGGGTTCTAACGGAAACGACGACGCTTTGGCTACGCTCGCAGACTTGGCTTCGCCTCCTCAGAAATTGAAACCTATAAGGTGTGGCGTTAAGCTTCCGTCGTCGTCGGAGGATCGACATCCTCTTGATATTCTCGCCGGAACCCTAGATAGGCTGCCGGAGATGGGTTTTGGCTGCTTCGAAGCTCCTTTGGGATCGAAGATTGCTGACGTGGAGGAAAGTGGTCAATTGACTCGTGGGTTTTCAAAGGAAGAGGATGATTCTCTTCCTCCTCTTCAAATGGAGTTTCAAGCTCGAAATCGCATCTCTTGGGATGGTCTCTCTCTCAGCTCCTCTGTTGATAGCAGCGATAGTGACTCATCTCCAGACGTTCGCAAGACCGTCACGGGTAAAAGAAAGCGGGAAACAAGGGTAAAGCTGGAGCATTTCTTGGAGAAGCTTGTGGGGAGTATGATGAAGCGGCAGGAGAAGATGCATAATCAGTTGATTAATGTGATGGAGAAGATGGAAGTGGAGAGAATACGCCGTGAGGAAGCTTGGAGGCAACAGGAAACCGAGAGGATGACACAGAATGAAGAAGCACGGAAGCAAGAGATGGCACGCAACTTGTCTCTCATCTCTTTCATCAGAAGTGTTACTGGTGACGAGATCGAGATCCCTAAACAGTGTGAATTCCCGCAACCACTCCAGCAGATTCTTCCGGAACAATGTAAAGACGAGAAATGTGAATCCGCTCAGAGAGAAAGAGAGATAAAGTTTAGGTACTCAAGCGGCAGTGGCAGCAGTGGTAGAAGGTGGCCGCAAGAGGAAGTGCAGGCATTGATAAGTTCGAGAAGCGATGTGGAAGAGAAGACGGGGATCAACAAGGGAGCGATTTGGGATGAGATATCAGCAAGAATGAAAGAAAGAGGGTACGAAAGATCTGCGAAAAAGTGTAAGGAGAAGTGGGAGAACATGAACAAGTACTATAGGAGAGTGACGGAAGGTGGGCAGAAACAGCCTGAGCACAGCAAGACTCGCTCATACTTTGAGAAACTTGGAAATTTTTACAAGACCATTTCCTCGGGAGAGAGGGAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

398

Amino Acids

45.57

Weight (kDa)

5.91

Isoelectric Point (pI)

61.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 302 - 384 2.4e-22 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47660
fragaria_vesca FvH4_3g00330
malus_domestica MD05G1361500.v1.1 MD10G1338800.v1.1
prunus_persica Prupe.4G003900_v2.0.a1
pyrus_communis pycom05g32800 pycom10g28850
rosa_chinensis RchiOBHm_Chr5g0000511
rosa_laevigata RLG00000030873
rosa_multiflora Rmu_co7961544.1_g000001
rosa_roxburghii Rroxscaffold_1G00075670
rosa_rugosa Rorug04G0384300
rosa_samantha Rh5AG004200 Rh5BG005700 Rh5CG004600 Rh5DG004500 Rh5DG004600
rosa_wichuraiana Rw5G000430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 104
AccB1I GGYRCC 1 cut(s) 104
AccB7I CCANNNNNTGG 1 cut(s) 71
AccBSI CCGCTC 1 cut(s) 848
AccIII TCCGGA 1 cut(s) 814
AciI CCGC 7 cut(s) 90, 514, 574, 791, 846, 885, 914
AclWI GGATC 4 cut(s) 234, 316, 763, 980
AcoI YGGCCR 1 cut(s) 911
AcsI RAATTY 2 cut(s) 785, 1156
AfaI GTAC 5 cut(s) 101, 106, 878, 1028, 1079
AfiI CCNNNNNNNGG 4 cut(s) 71, 115, 264, 278
AgsI TTSAA 4 cut(s) 184, 360, 392, 404
AjiI CACGTC 1 cut(s) 325
AluBI AGCT 7 cut(s) 208, 299, 407, 444, 532, 553, 650
AluI AGCT 7 cut(s) 208, 299, 407, 444, 532, 553, 650
Alw21I GWGCWC 1 cut(s) 1122
Alw26I GTCTC 2 cut(s) 437, 729
AlwI GGATC 4 cut(s) 234, 316, 763, 980
Ama87I CYCGRG 1 cut(s) 1177
Aor13HI TCCGGA 1 cut(s) 814
AoxI GGCC 1 cut(s) 911
ApeKI GCWGC 4 cut(s) 268, 288, 459, 894
ApoI RAATTY 2 cut(s) 785, 1156
AseI ATTAAT 1 cut(s) 603
Asp718I GGTACC 1 cut(s) 104
AsuHPI GGTGA 1 cut(s) 767
AsuII TTCGAA 1 cut(s) 294
AvaI CYCGRG 1 cut(s) 1177
BanI GGYRCC 1 cut(s) 104
BauI CACGAG 1 cut(s) 348
BbsI GAAGAC 1 cut(s) 971
Bbv12I GWGCWC 1 cut(s) 1122
BbvI GCAGC 4 cut(s) 255, 275, 471, 906
BccI CCATC 6 cut(s) 65, 271, 422, 604, 613, 703
BceAI ACGGC 1 cut(s) 624
BcgI CGANNNNNNTGC 2 cut(s) 1019, 1053
BcoDI GTCTC 2 cut(s) 437, 729
BfaI CTAG 1 cut(s) 260
BfmI CTRYAG 1 cut(s) 1081
BglII AGATCT 1 cut(s) 1034
BisI GCNGC 7 cut(s) 269, 289, 460, 575, 886, 895, 914
BlsI GCNGC 7 cut(s) 270, 290, 461, 576, 887, 896, 915
BmcAI AGTACT 1 cut(s) 1079
BmeT110I CYCGRG 1 cut(s) 1177
BmgBI CACGTC 1 cut(s) 325
BmiI GGNNCC 2 cut(s) 106, 256
BmsI GCATC 2 cut(s) 426, 576
BpiI GAAGAC 1 cut(s) 971
BpmI CTGGAG 3 cut(s) 462, 554, 785
Bpu10I CCTNAGC 1 cut(s) 1116
Bpu14I TTCGAA 1 cut(s) 294
BpuEI CTTGAG 1 cut(s) 865
BsaBI GATNNNNATC 2 cut(s) 231, 767
BsaI GGTCTC 1 cut(s) 437
BsaJI CCNNGG 1 cut(s) 1176
BsaWI WCCGGW 1 cut(s) 814
Bsc4I CCNNNNNNNGG 4 cut(s) 71, 115, 264, 278
Bse118I RCCGGY 1 cut(s) 14
Bse1I ACTGG 1 cut(s) 757
Bse8I GATNNNNATC 2 cut(s) 231, 767
BseAI TCCGGA 1 cut(s) 814
BseDI CCNNGG 1 cut(s) 1176
BseGI GGATG 6 cut(s) 102, 232, 376, 433, 681, 1000
BseJI GATNNNNATC 2 cut(s) 231, 767
BseLI CCNNNNNNNGG 4 cut(s) 71, 115, 264, 278
BseMII CTCAG 4 cut(s) 188, 454, 863, 1107
BseNI ACTGG 1 cut(s) 757
BseRI GAGGAG 3 cut(s) 162, 375, 436
BseXI GCAGC 4 cut(s) 255, 275, 471, 906
BsgI GTGCAG 1 cut(s) 947
BshFI GGCC 1 cut(s) 913
BshNI GGYRCC 1 cut(s) 104
BsiHKAI GWGCWC 1 cut(s) 1122
BsiHKCI CYCGRG 1 cut(s) 1177
BsiSI CCGG 4 cut(s) 15, 252, 272, 815
BslI CCNNNNNNNGG 4 cut(s) 71, 115, 264, 278
BsmAI GTCTC 2 cut(s) 437, 729
BsnI GGCC 1 cut(s) 913
Bso31I GGTCTC 1 cut(s) 437
BsoBI CYCGRG 1 cut(s) 1177
Bsp119I TTCGAA 1 cut(s) 294
Bsp1286I GDGCHC 1 cut(s) 1122
Bsp13I TCCGGA 1 cut(s) 814
Bsp143I GATC 6 cut(s) 226, 308, 762, 768, 972, 1034
BspACI CCGC 7 cut(s) 90, 514, 574, 791, 846, 885, 914
BspANI GGCC 1 cut(s) 913
BspCNI CTCAG 4 cut(s) 187, 453, 862, 1108
BspEI TCCGGA 1 cut(s) 814
BspLI GGNNCC 2 cut(s) 106, 256
BspPI GGATC 4 cut(s) 234, 316, 763, 980
BspT104I TTCGAA 1 cut(s) 294
BspT107I GGYRCC 1 cut(s) 104
BspTNI GGTCTC 1 cut(s) 437
BsrBI CCGCTC 1 cut(s) 848
BsrFI RCCGGY 1 cut(s) 14
BsrI ACTGG 1 cut(s) 757
BssAI RCCGGY 1 cut(s) 14
BssECI CCNNGG 1 cut(s) 1176
BssMI GATC 6 cut(s) 226, 308, 762, 768, 972, 1034
BssSI CACGAG 1 cut(s) 348
Bst2BI CACGAG 1 cut(s) 348
Bst4CI ACNGT 5 cut(s) 23, 83, 104, 496, 780
Bst6I CTCTTC 4 cut(s) 360, 384, 393, 954
BstBI TTCGAA 1 cut(s) 294
BstC8I GCNNGC 4 cut(s) 16, 153, 715, 930
BstDEI CTNAG 4 cut(s) 174, 440, 849, 1116
BstF5I GGATG 6 cut(s) 102, 232, 376, 433, 681, 1000
BstKTI GATC 6 cut(s) 229, 311, 765, 771, 975, 1037
BstMAI GTCTC 2 cut(s) 437, 729
BstMBI GATC 6 cut(s) 226, 308, 762, 768, 972, 1034
BstMWI GCNNNNNNNGC 6 cut(s) 152, 161, 891, 894, 1111, 1131
BstSFI CTRYAG 1 cut(s) 1081
BstV1I GCAGC 4 cut(s) 255, 275, 471, 906
BstV2I GAAGAC 1 cut(s) 971
BstX2I RGATCY 2 cut(s) 768, 1034
BstYI RGATCY 2 cut(s) 768, 1034
BsuRI GGCC 1 cut(s) 913
BtgZI GCGATG 1 cut(s) 966
BtrI CACGTC 1 cut(s) 325
BtsCI GGATG 6 cut(s) 102, 232, 376, 433, 681, 1000
BtsI GCAGTG 2 cut(s) 895, 904
BtsIMutI CAGTG 3 cut(s) 785, 895, 904
Cac8I GCNNGC 4 cut(s) 16, 153, 715, 930
Cfr10I RCCGGY 1 cut(s) 14
CseI GACGC 1 cut(s) 146
Csp6I GTAC 5 cut(s) 100, 105, 877, 1027, 1078
CviAII CATG 1 cut(s) 1069
CviQI GTAC 5 cut(s) 100, 105, 877, 1027, 1078
DdeI CTNAG 4 cut(s) 174, 440, 849, 1116
DpnI GATC 6 cut(s) 228, 310, 764, 770, 974, 1036
DpnII GATC 6 cut(s) 226, 308, 762, 768, 972, 1034
EaeI YGGCCR 1 cut(s) 911
Eam1104I CTCTTC 4 cut(s) 360, 384, 393, 954
EarI CTCTTC 4 cut(s) 360, 384, 393, 954
Eco31I GGTCTC 1 cut(s) 437
Eco32I GATATC 1 cut(s) 1002
Eco88I CYCGRG 1 cut(s) 1177
EcoRI GAATTC 1 cut(s) 785
EcoRV GATATC 1 cut(s) 1002
EcoT22I ATGCAT 1 cut(s) 591
FaeI CATG 1 cut(s) 1072
FaiI YATR 6 cut(s) 191, 566, 591, 1070, 1083, 1138
FatI CATG 1 cut(s) 1068
FauI CCCGC 3 cut(s) 83, 507, 798
Fnu4HI GCNGC 7 cut(s) 269, 289, 460, 575, 886, 895, 914
FokI GGATG 6 cut(s) 109, 219, 383, 440, 688, 1007
Fsp4HI GCNGC 7 cut(s) 269, 289, 460, 575, 886, 895, 914
FspBI CTAG 1 cut(s) 260
GluI GCNGC 7 cut(s) 269, 289, 460, 575, 886, 895, 914
GsuI CTGGAG 3 cut(s) 462, 554, 785
HaeIII GGCC 1 cut(s) 913
HapII CCGG 4 cut(s) 15, 252, 272, 815
HgaI GACGC 1 cut(s) 146
Hin1II CATG 1 cut(s) 1072
HindIII AAGCTT 3 cut(s) 206, 551, 648
HinfI GANTC 7 cut(s) 33, 346, 374, 470, 808, 842, 1129
HpaII CCGG 4 cut(s) 15, 252, 272, 815
HphI GGTGA 1 cut(s) 767
Hpy188I TCNGA 6 cut(s) 27, 79, 177, 223, 743, 852
Hpy188III TCNNGA 6 cut(s) 239, 479, 766, 815, 945, 1179
Hpy99I CGWCG 6 cut(s) 44, 137, 140, 217, 220, 223
HpyAV CCTTC 2 cut(s) 900, 1091
HpyCH4III ACNGT 5 cut(s) 23, 83, 104, 496, 780
HpyCH4IV ACGT 2 cut(s) 324, 483
HpyCH4V TGCA 2 cut(s) 589, 928
HpyF10VI GCNNNNNNNGC 6 cut(s) 152, 161, 891, 894, 1111, 1131
HpyF3I CTNAG 4 cut(s) 174, 440, 849, 1116
HpySE526I ACGT 2 cut(s) 324, 483
Hsp92II CATG 1 cut(s) 1072
Kpn2I TCCGGA 1 cut(s) 814
KpnI GGTACC 1 cut(s) 108
KroI GCCGGC 1 cut(s) 14
KroNI GCCGGC 1 cut(s) 16
Kzo9I GATC 6 cut(s) 226, 308, 762, 768, 972, 1034
LmnI GCTCC 4 cut(s) 304, 449, 535, 983
Lsp1109I GCAGC 4 cut(s) 255, 275, 471, 906
LweI GCATC 2 cut(s) 426, 576
MaeI CTAG 1 cut(s) 260
MaeII ACGT 2 cut(s) 324, 483
MaeIII GTNAC 5 cut(s) 467, 496, 748, 755, 1090
MalI GATC 6 cut(s) 228, 310, 764, 770, 974, 1036
MbiI CCGCTC 1 cut(s) 848
MboI GATC 6 cut(s) 226, 308, 762, 768, 972, 1034
MfeI CAATTG 1 cut(s) 341
MflI RGATCY 2 cut(s) 768, 1034
MhlI GDGCHC 1 cut(s) 1122
MluCI AATT 4 cut(s) 179, 341, 785, 1156
MlyI GAGTC 4 cut(s) 42, 340, 464, 1123
MmeI TCCRAC 2 cut(s) 5, 201
Mph1103I ATGCAT 1 cut(s) 591
MreI CGCCGGCG 1 cut(s) 14
MroI TCCGGA 1 cut(s) 814
MroNI GCCGGC 1 cut(s) 14
MseI TTAA 3 cut(s) 60, 204, 603
MspI CCGG 4 cut(s) 15, 252, 272, 815
MunI CAATTG 1 cut(s) 341
MwoI GCNNNNNNNGC 6 cut(s) 152, 161, 891, 894, 1111, 1131
NaeI GCCGGC 1 cut(s) 16
NdeII GATC 6 cut(s) 226, 308, 762, 768, 972, 1034
NgoMIV GCCGGC 1 cut(s) 14
NlaIII CATG 1 cut(s) 1072
NlaIV GGNNCC 2 cut(s) 106, 256
NmuCI GTSAC 4 cut(s) 467, 496, 755, 1090
NsiI ATGCAT 1 cut(s) 591
NspV TTCGAA 1 cut(s) 294
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PdiI GCCGGC 1 cut(s) 16
PfeI GAWTC 3 cut(s) 374, 808, 842
PflMI CCANNNNNTGG 1 cut(s) 71
PkrI GCNGC 7 cut(s) 270, 290, 461, 576, 887, 896, 915
PleI GAGTC 4 cut(s) 41, 340, 464, 1123
PpsI GAGTC 4 cut(s) 41, 340, 464, 1123
PshBI ATTAAT 1 cut(s) 603
PspN4I GGNNCC 2 cut(s) 106, 256
PsuI RGATCY 2 cut(s) 768, 1034
RsaI GTAC 5 cut(s) 101, 106, 878, 1028, 1079
RsaNI GTAC 5 cut(s) 100, 105, 877, 1027, 1078
SaqAI TTAA 3 cut(s) 60, 204, 603
SatI GCNGC 7 cut(s) 269, 289, 460, 575, 886, 895, 914
Sau3AI GATC 6 cut(s) 226, 308, 762, 768, 972, 1034
ScaI AGTACT 1 cut(s) 1079
SchI GAGTC 4 cut(s) 42, 340, 464, 1123
SduI GDGCHC 1 cut(s) 1122
SfaNI GCATC 2 cut(s) 426, 576
SfcI CTRYAG 1 cut(s) 1081
SfuI TTCGAA 1 cut(s) 294
SgrAI CRCCGGYG 1 cut(s) 14
SmlI CTYRAG 1 cut(s) 880
SmoI CTYRAG 1 cut(s) 880
Sse9I AATT 4 cut(s) 179, 341, 785, 1156
SsiI CCGC 7 cut(s) 90, 514, 574, 791, 846, 885, 914
SspMI CTAG 1 cut(s) 260
TaaI ACNGT 5 cut(s) 23, 83, 104, 496, 780
TaiI ACGT 2 cut(s) 327, 486
TaqI TCGA 7 cut(s) 69, 229, 294, 311, 409, 765, 944
TasI AATT 4 cut(s) 179, 341, 785, 1156
TatI WGTACW 1 cut(s) 1077
TauI GCSGC 3 cut(s) 577, 888, 916
TfiI GAWTC 3 cut(s) 374, 808, 842
Tru1I TTAA 3 cut(s) 60, 204, 603
Tru9I TTAA 3 cut(s) 60, 204, 603
TscAI CASTG 3 cut(s) 785, 895, 904
TseFI GTSAC 4 cut(s) 467, 496, 755, 1090
TseI GCWGC 4 cut(s) 268, 288, 459, 894
Tsp45I GTSAC 4 cut(s) 467, 496, 755, 1090
TspDTI ATGAA 5 cut(s) 584, 702, 727, 1028, 1085
TspGWI ACGGA 4 cut(s) 141, 201, 712, 1109
TspRI CASTG 3 cut(s) 785, 895, 904
Van91I CCANNNNNTGG 1 cut(s) 71
VspI ATTAAT 1 cut(s) 603
XapI RAATTY 2 cut(s) 785, 1156
XspI CTAG 1 cut(s) 260
ZrmI AGTACT 1 cut(s) 1079
Zsp2I ATGCAT 1 cut(s) 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.