FvH4_3g00330
MYB Family

Trihelix transcription factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
193336 .. 196048
2713 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g00330.t1

Sequence Viewer

Length: 1419 bp
ATGGAGGTGCTGACCGGCGACCGGAATATGCCGGACCCAGCAGCAGCAGAAGGTGAGGAGTTCCCGGCGCACATAACCCCATTATTCACTGAGCCACACCAACAACTTGTCTTTGACAATCCAACGGCGGCTGCTATGTCGCCACAGAAGCTCCGTATCAGGTGCAACGGCAGGTCTGCTCTACCAGATGATGCTGATCTCGCCTTACTCGACAAAGGCTTGTCACCACGTAATGATGTTGATGAGGCACACGGTGTACAATTCGTGAATTGGAAGCGGAAGAGAAAGAGAACATCGTCTTGTGCTAGTTCTACAAGAAAGAGCAGAAGGCTTGAAAAGCTCGAGCATTTTCTGGAAAGTCTGGTAAACAAAATGCTGGAGAAGCAGGAACAGATGCATATGAAGTTGATAGAAATGGTACAAGACAAGGAGAAAGAGAGAATAGCCAAAGAAGAAGCCTGGAAACAGCAGGAGTTGGAGAGGATCATAAGGGATGAGGAGGTAAGGGCGCAAGAGACATCACGCAGCCTTGCCATCGTTAACTTTATACAAAATCTTTTGGGCAGTGATGTTCAACTCCCCCAACCAGCTCCAATTGTAGCACAACCAGTAGCAGCTGTACCTTCTAGTTCCCATCATGACCATCAATGTGTGGAAGAAAATGATAAGCTTCACAAAGACTGTCATGTTCAAGTTCCCCAACCAGCTCCACTTGTAGCACAATCAGTAGCAACAGTACCTCCTACTTCTAATGATGACCATCAATGTGCGGAACAAAATGATAATCTTCACAAAGACACGGCCACTGTCAAGTGTAGTGCAACAGCAACTGATAAAAGATGGATCCAAGCTGAAGCGCAGGCACTTATAGGGCTGTGGGCTAGTGTGGAGCATAAGTTCCGCACCCCATCAAATTCTGGCCCTGGAGCTCTATGGGAGGAGATAGCTCTTGGGATGAACAGTATGGGCTTTGATCGCACAGGGAAGAAGTGTAAAGAGAAATGGGAAAACATGAACAAGTACTTCAAAAAGGCAATCACAAATGACAGAAAGCGTTCTGCGAATGACAAGACTTGTCAATATTTTAATGAATTGGAGTTGCTCTACAAAAGTGGACTTCTGAATCTGGGGAATGTCGGCTTTAGTCCCCCAAGCAATCTGGAGAATGGCGGGTTTAGTCCCACAAGCAATCTGGGGAATGGCAGTTGTAGTCCCACAAGCAATATGGGGAATGGCAGCCTTAGTCCCACAAGCAATATGGGGAATGGCGGCTTTAGTCCTACAAACAACCAGAAGAGTGGAAACGAGTCCCAACAGTGCGTGCCCAGTGACACTAGTCTTCTAACTCGTGCCACAATACCGTTTCAGATCGATGAAGCTTCAGAGAGAACAAGAGTAGTGGTTTCTCCTGCTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

473

Amino Acids

52.26

Weight (kDa)

6.15

Isoelectric Point (pI)

52.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 279 - 367 1.1e-20 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013499)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 162
AciI CCGC 6 cut(s) 128, 277, 770, 901, 1170, 1269
AclWI GGATC 3 cut(s) 491, 838, 851
AcoI YGGCCR 1 cut(s) 801
AcsI RAATTY 1 cut(s) 913
AcuI CTGAAG 2 cut(s) 873, 1365
AdeI CACNNNGTG 1 cut(s) 254
AfaI GTAC 5 cut(s) 258, 420, 621, 738, 1022
AfiI CCNNNNNNNGG 1 cut(s) 21
AgsI TTSAA 4 cut(s) 335, 575, 692, 1027
AhlI ACTAGT 1 cut(s) 1334
AjnI CCWGG 2 cut(s) 458, 922
AloI GAACNNNNNNTCC 2 cut(s) 881, 913
Alw21I GWGCWC 1 cut(s) 931
Alw26I GTCTC 1 cut(s) 509
AlwI GGATC 3 cut(s) 491, 838, 851
AlwNI CAGNNNCTG 1 cut(s) 830
Ama87I CYCGRG 1 cut(s) 341
AoxI GGCC 2 cut(s) 801, 919
ApeKI GCWGC 6 cut(s) 41, 44, 131, 525, 614, 1236
ApoI RAATTY 1 cut(s) 913
Asp700I GAANNNNTTC 1 cut(s) 1054
AspLEI GCGC 3 cut(s) 70, 511, 859
AspS9I GGNCC 2 cut(s) 34, 920
AsuC2I CCSGG 1 cut(s) 65
AsuHPI GGTGA 2 cut(s) 65, 216
AvaI CYCGRG 1 cut(s) 341
AvaII GGWCC 1 cut(s) 34
BaeGI GKGCMC 1 cut(s) 1326
BamHI GGATCC 1 cut(s) 843
BanII GRGCYC 1 cut(s) 931
BauI CACGAG 1 cut(s) 1347
BbsI GAAGAC 1 cut(s) 1331
Bbv12I GWGCWC 1 cut(s) 931
BbvI GCAGC 6 cut(s) 53, 56, 118, 537, 626, 1248
BccI CCATC 6 cut(s) 542, 642, 651, 768, 834, 916
BceAI ACGGC 3 cut(s) 141, 184, 816
BciT130I CCWGG 2 cut(s) 460, 924
BcnI CCSGG 1 cut(s) 65
BcoDI GTCTC 1 cut(s) 509
BcuI ACTAGT 1 cut(s) 1334
BfaI CTAG 4 cut(s) 306, 627, 882, 1335
BfuAI ACCTGC 1 cut(s) 162
BisI GCNGC 8 cut(s) 42, 45, 129, 132, 526, 615, 1237, 1270
BlsI GCNGC 8 cut(s) 43, 46, 130, 133, 527, 616, 1238, 1271
BmcAI AGTACT 1 cut(s) 1022
Bme1390I CCNGG 3 cut(s) 65, 460, 924
Bme18I GGWCC 1 cut(s) 34
BmeT110I CYCGRG 1 cut(s) 341
BmgT120I GGNCC 2 cut(s) 34, 920
BmiI GGNNCC 2 cut(s) 36, 845
BmrFI CCNGG 3 cut(s) 65, 460, 924
BmrI ACTGGG 1 cut(s) 1320
BmsI GCATC 2 cut(s) 181, 384
BmuI ACTGGG 1 cut(s) 1320
BoxI GACNNNNGTC 1 cut(s) 1335
BpiI GAAGAC 1 cut(s) 1331
BpmI CTGGAG 3 cut(s) 398, 945, 1181
BpuMI CCSGG 1 cut(s) 65
Bsa29I ATCGAT 1 cut(s) 1371
BsaAI YACGTR 1 cut(s) 230
BsaBI GATNNNNATC 2 cut(s) 195, 759
BsaJI CCNNGG 1 cut(s) 922
BsaWI WCCGGW 1 cut(s) 21
BsaXI ACNNNNNCTCC 6 cut(s) 135, 165, 724, 754, 881, 911
Bsc4I CCNNNNNNNGG 1 cut(s) 21
Bse118I RCCGGY 1 cut(s) 14
Bse1I ACTGG 2 cut(s) 608, 1326
Bse8I GATNNNNATC 2 cut(s) 195, 759
BseBI CCWGG 2 cut(s) 460, 924
BseCI ATCGAT 1 cut(s) 1371
BseDI CCNNGG 1 cut(s) 922
BseGI GGATG 2 cut(s) 499, 960
BseJI GATNNNNATC 2 cut(s) 195, 759
BseLI CCNNNNNNNGG 1 cut(s) 21
BseMII CTCAG 1 cut(s) 81
BseNI ACTGG 2 cut(s) 608, 1326
BseRI GAGGAG 3 cut(s) 71, 512, 953
BseSI GKGCMC 1 cut(s) 1326
BseXI GCAGC 6 cut(s) 53, 56, 118, 537, 626, 1248
BseYI CCCAGC 1 cut(s) 37
Bsh1285I CGRYCG 1 cut(s) 22
BshFI GGCC 2 cut(s) 803, 921
BshVI ATCGAT 1 cut(s) 1371
BsiEI CGRYCG 1 cut(s) 22
BsiHKAI GWGCWC 1 cut(s) 931
BsiHKCI CYCGRG 1 cut(s) 341
BsiSI CCGG 4 cut(s) 15, 22, 32, 65
BslFI GGGAC 5 cut(s) 1131, 1164, 1197, 1230, 1294
BslI CCNNNNNNNGG 1 cut(s) 21
BsmAI GTCTC 1 cut(s) 509
BsmFI GGGAC 5 cut(s) 1131, 1164, 1197, 1230, 1294
BsnI GGCC 2 cut(s) 803, 921
BsoBI CYCGRG 1 cut(s) 341
Bsp1286I GDGCHC 2 cut(s) 931, 1326
Bsp1407I TGTACA 1 cut(s) 256
Bsp143I GATC 5 cut(s) 196, 483, 843, 973, 1368
BspACI CCGC 6 cut(s) 128, 277, 770, 901, 1170, 1269
BspANI GGCC 2 cut(s) 803, 921
BspCNI CTCAG 1 cut(s) 82
BspDI ATCGAT 1 cut(s) 1371
BspHI TCATGA 1 cut(s) 637
BspLI GGNNCC 2 cut(s) 36, 845
BspMI ACCTGC 1 cut(s) 162
BspPI GGATC 3 cut(s) 491, 838, 851
BsrFI RCCGGY 1 cut(s) 14
BsrGI TGTACA 1 cut(s) 256
BsrI ACTGG 2 cut(s) 608, 1326
BssAI RCCGGY 1 cut(s) 14
BssECI CCNNGG 1 cut(s) 922
BssMI GATC 5 cut(s) 196, 483, 843, 973, 1368
BssSI CACGAG 1 cut(s) 1347
Bst2BI CACGAG 1 cut(s) 1347
Bst2UI CCWGG 2 cut(s) 460, 924
Bst4CI ACNGT 7 cut(s) 254, 683, 736, 808, 962, 1317, 1362
Bst6I CTCTTC 2 cut(s) 275, 1289
BstAUI TGTACA 1 cut(s) 256
BstBAI YACGTR 1 cut(s) 230
BstC8I GCNNGC 2 cut(s) 861, 1322
BstDEI CTNAG 2 cut(s) 90, 1241
BstF5I GGATG 2 cut(s) 499, 960
BstHHI GCGC 3 cut(s) 70, 511, 859
BstKTI GATC 5 cut(s) 199, 486, 846, 976, 1371
BstMAI GTCTC 1 cut(s) 509
BstMBI GATC 5 cut(s) 196, 483, 843, 973, 1368
BstMCI CGRYCG 1 cut(s) 22
BstMWI GCNNNNNNNGC 5 cut(s) 148, 200, 337, 382, 975
BstNI CCWGG 2 cut(s) 460, 924
BstPAI GACNNNNGTC 1 cut(s) 1335
BstSCI CCNGG 3 cut(s) 63, 458, 922
BstSLI GKGCMC 1 cut(s) 1326
BstV1I GCAGC 6 cut(s) 53, 56, 118, 537, 626, 1248
BstV2I GAAGAC 1 cut(s) 1331
BstX2I RGATCY 1 cut(s) 843
BstXI CCANNNNNNTGG 1 cut(s) 1298
BstYI RGATCY 1 cut(s) 843
Bsu15I ATCGAT 1 cut(s) 1371
BsuRI GGCC 2 cut(s) 803, 921
BsuTUI ATCGAT 1 cut(s) 1371
BtsCI GGATG 2 cut(s) 499, 960
BtsI GCAGTG 1 cut(s) 571
BtsIMutI CAGTG 5 cut(s) 87, 571, 804, 1322, 1333
BveI ACCTGC 1 cut(s) 162
Cac8I GCNNGC 2 cut(s) 861, 1322
CaiI CAGNNNCTG 1 cut(s) 830
CciI TCATGA 1 cut(s) 637
CfoI GCGC 3 cut(s) 70, 511, 859
Cfr10I RCCGGY 1 cut(s) 14
Cfr13I GGNCC 2 cut(s) 34, 920
ClaI ATCGAT 1 cut(s) 1371
Csp6I GTAC 5 cut(s) 257, 419, 620, 737, 1021
CspCI CAANNNNNGTGG 2 cut(s) 1380, 1415
CviAII CATG 3 cut(s) 638, 686, 1012
CviQI GTAC 5 cut(s) 257, 419, 620, 737, 1021
DdeI CTNAG 2 cut(s) 90, 1241
DpnI GATC 5 cut(s) 198, 485, 845, 975, 1370
DpnII GATC 5 cut(s) 196, 483, 843, 973, 1368
DraIII CACNNNGTG 1 cut(s) 254
EaeI YGGCCR 1 cut(s) 801
Eam1104I CTCTTC 2 cut(s) 275, 1289
EarI CTCTTC 2 cut(s) 275, 1289
Ecl136II GAGCTC 1 cut(s) 929
Eco24I GRGCYC 1 cut(s) 931
Eco47I GGWCC 1 cut(s) 34
Eco53kI GAGCTC 1 cut(s) 929
Eco57I CTGAAG 2 cut(s) 873, 1365
Eco88I CYCGRG 1 cut(s) 341
EcoICRI GAGCTC 1 cut(s) 929
EcoRII CCWGG 2 cut(s) 458, 922
EcoT22I ATGCAT 1 cut(s) 399
EcoT38I GRGCYC 1 cut(s) 931
FaeI CATG 3 cut(s) 641, 689, 1015
FaqI GGGAC 5 cut(s) 1131, 1164, 1197, 1230, 1294
FatI CATG 3 cut(s) 637, 685, 1011
FauI CCCGC 1 cut(s) 1163
FauNDI CATATG 1 cut(s) 399
Fnu4HI GCNGC 8 cut(s) 42, 45, 129, 132, 526, 615, 1237, 1270
FokI GGATG 2 cut(s) 506, 967
FriOI GRGCYC 1 cut(s) 931
Fsp4HI GCNGC 8 cut(s) 42, 45, 129, 132, 526, 615, 1237, 1270
FspBI CTAG 4 cut(s) 306, 627, 882, 1335
GlaI GCGC 3 cut(s) 69, 510, 858
GluI GCNGC 8 cut(s) 42, 45, 129, 132, 526, 615, 1237, 1270
GsaI CCCAGC 1 cut(s) 41
GsuI CTGGAG 3 cut(s) 398, 945, 1181
HaeIII GGCC 2 cut(s) 803, 921
HapII CCGG 4 cut(s) 15, 22, 32, 65
HhaI GCGC 3 cut(s) 70, 511, 859
Hin1II CATG 3 cut(s) 641, 689, 1015
Hin6I GCGC 3 cut(s) 68, 509, 857
HinP1I GCGC 3 cut(s) 68, 509, 857
HincII GTYRAC 1 cut(s) 541
HindII GTYRAC 1 cut(s) 541
HindIII AAGCTT 2 cut(s) 668, 1377
HinfI GANTC 2 cut(s) 1123, 1307
HpaI GTTAAC 1 cut(s) 541
HpaII CCGG 4 cut(s) 15, 22, 32, 65
HphI GGTGA 2 cut(s) 65, 216
Hpy166II GTNNAC 4 cut(s) 257, 367, 541, 1115
Hpy188I TCNGA 3 cut(s) 1122, 1368, 1384
Hpy188III TCNNGA 4 cut(s) 265, 353, 638, 1160
Hpy8I GTNNAC 4 cut(s) 257, 367, 541, 1115
HpyAV CCTTC 3 cut(s) 44, 321, 633
HpyCH4III ACNGT 7 cut(s) 254, 683, 736, 808, 962, 1317, 1362
HpyCH4IV ACGT 1 cut(s) 229
HpyCH4V TGCA 3 cut(s) 165, 397, 821
HpyF10VI GCNNNNNNNGC 5 cut(s) 148, 200, 337, 382, 975
HpyF3I CTNAG 2 cut(s) 90, 1241
HpySE526I ACGT 1 cut(s) 229
Hsp92II CATG 3 cut(s) 641, 689, 1015
HspAI GCGC 3 cut(s) 68, 509, 857
KspAI GTTAAC 1 cut(s) 541
Kzo9I GATC 5 cut(s) 196, 483, 843, 973, 1368
LmnI GCTCC 5 cut(s) 156, 595, 712, 889, 926
Lsp1109I GCAGC 6 cut(s) 53, 56, 118, 537, 626, 1248
LweI GCATC 2 cut(s) 181, 384
MaeI CTAG 4 cut(s) 306, 627, 882, 1335
MaeII ACGT 1 cut(s) 229
MaeIII GTNAC 2 cut(s) 222, 1328
MalI GATC 5 cut(s) 198, 485, 845, 975, 1370
MboI GATC 5 cut(s) 196, 483, 843, 973, 1368
MboII GAAGA 7 cut(s) 292, 464, 668, 779, 997, 1306, 1331
MfeI CAATTG 1 cut(s) 594
MflI RGATCY 1 cut(s) 843
MhlI GDGCHC 2 cut(s) 931, 1326
MluCI AATT 5 cut(s) 260, 268, 594, 913, 1091
MlyI GAGTC 1 cut(s) 1316
MmeI TCCRAC 2 cut(s) 146, 456
MnlI CCTC 7 cut(s) 49, 238, 474, 490, 493, 750, 931
Mph1103I ATGCAT 1 cut(s) 399
MroXI GAANNNNTTC 1 cut(s) 1054
MseI TTAA 3 cut(s) 540, 1086, 1417
MslI CAYNNNNRTG 2 cut(s) 648, 765
MspA1I CMGCKG 1 cut(s) 617
MspI CCGG 4 cut(s) 15, 22, 32, 65
MspR9I CCNGG 3 cut(s) 65, 460, 924
MunI CAATTG 1 cut(s) 594
MvaI CCWGG 2 cut(s) 460, 924
MwoI GCNNNNNNNGC 5 cut(s) 148, 200, 337, 382, 975
NciI CCSGG 1 cut(s) 65
NdeI CATATG 1 cut(s) 399
NdeII GATC 5 cut(s) 196, 483, 843, 973, 1368
NlaIII CATG 3 cut(s) 641, 689, 1015
NlaIV GGNNCC 2 cut(s) 36, 845
NmuCI GTSAC 2 cut(s) 222, 1328
NsiI ATGCAT 1 cut(s) 399
PaeR7I CTCGAG 1 cut(s) 341
PagI TCATGA 1 cut(s) 637
PcsI WCGNNNNNNNCGW 1 cut(s) 207
PdmI GAANNNNTTC 1 cut(s) 1054
PfeI GAWTC 1 cut(s) 1123
PkrI GCNGC 8 cut(s) 43, 46, 130, 133, 527, 616, 1238, 1271
PleI GAGTC 1 cut(s) 1315
PpsI GAGTC 1 cut(s) 1315
Ppu21I YACGTR 1 cut(s) 230
PshAI GACNNNNGTC 1 cut(s) 1335
Psp124BI GAGCTC 1 cut(s) 931
Psp6I CCWGG 2 cut(s) 458, 922
PspFI CCCAGC 1 cut(s) 37
PspGI CCWGG 2 cut(s) 458, 922
PspN4I GGNNCC 2 cut(s) 36, 845
PspPI GGNCC 2 cut(s) 34, 920
PspXI VCTCGAGB 1 cut(s) 341
PstNI CAGNNNCTG 1 cut(s) 830
PsuI RGATCY 1 cut(s) 843
PvuII CAGCTG 1 cut(s) 617
RsaI GTAC 5 cut(s) 258, 420, 621, 738, 1022
RsaNI GTAC 5 cut(s) 257, 419, 620, 737, 1021
RseI CAYNNNNRTG 2 cut(s) 648, 765
SacI GAGCTC 1 cut(s) 931
SaqAI TTAA 3 cut(s) 540, 1086, 1417
SatI GCNGC 8 cut(s) 42, 45, 129, 132, 526, 615, 1237, 1270
Sau3AI GATC 5 cut(s) 196, 483, 843, 973, 1368
Sau96I GGNCC 2 cut(s) 34, 920
ScaI AGTACT 1 cut(s) 1022
SchI GAGTC 1 cut(s) 1316
ScrFI CCNGG 3 cut(s) 65, 460, 924
SduI GDGCHC 2 cut(s) 931, 1326
SfaNI GCATC 2 cut(s) 181, 384
Sfr274I CTCGAG 1 cut(s) 341
SinI GGWCC 1 cut(s) 34
SlaI CTCGAG 1 cut(s) 341
SmiMI CAYNNNNRTG 2 cut(s) 648, 765
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
SpeI ACTAGT 1 cut(s) 1334
Sse9I AATT 5 cut(s) 260, 268, 594, 913, 1091
SsiI CCGC 6 cut(s) 128, 277, 770, 901, 1170, 1269
SspI AATATT 1 cut(s) 1082
SspMI CTAG 4 cut(s) 306, 627, 882, 1335
SstI GAGCTC 1 cut(s) 931
StyD4I CCNGG 3 cut(s) 63, 458, 922
TaaI ACNGT 7 cut(s) 254, 683, 736, 808, 962, 1317, 1362
TaiI ACGT 1 cut(s) 232
TaqI TCGA 3 cut(s) 210, 342, 1371
TasI AATT 5 cut(s) 260, 268, 594, 913, 1091
TatI WGTACW 2 cut(s) 256, 1020
TauI GCSGC 2 cut(s) 131, 1272
TfiI GAWTC 1 cut(s) 1123
Tru1I TTAA 3 cut(s) 540, 1086, 1417
Tru9I TTAA 3 cut(s) 540, 1086, 1417
TscAI CASTG 5 cut(s) 94, 571, 811, 1322, 1333
TseFI GTSAC 2 cut(s) 222, 1328
TseI GCWGC 6 cut(s) 41, 44, 131, 525, 614, 1236
Tsp45I GTSAC 2 cut(s) 222, 1328
TspDTI ATGAA 5 cut(s) 416, 971, 1028, 1104, 1389
TspGWI ACGGA 1 cut(s) 143
TspRI CASTG 5 cut(s) 94, 571, 811, 1322, 1333
VpaK11BI GGWCC 1 cut(s) 34
XapI RAATTY 1 cut(s) 913
XcmI CCANNNNNNNNNTGG 3 cut(s) 1189, 1222, 1255
XhoI CTCGAG 1 cut(s) 341
XmnI GAANNNNTTC 1 cut(s) 1054
XspI CTAG 4 cut(s) 306, 627, 882, 1335
ZrmI AGTACT 1 cut(s) 1022
Zsp2I ATGCAT 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.