MD05G1361500.v1.1
MYB Family

Trihelix transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0013499
Physical Location & Seq
Forward (+)
47693699 .. 47696203
2505 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1361500.v1.1.491

Sequence Viewer

Length: 1239 bp
ATGGCAGAGTTAACCGGCGGGCGGCAGTTACCGAACTCGGACGCCTTTGGAGAGCACATATCCCCGTTCCCTGAGAGCACATACGACCTTGTGTTCGAGAATCCGACGCCCGCGGTTCCCTCGCCGCCCCAGAAGCTGCGTCCTGTCAGGGGCAGCGGCGGCAGGTCTCCGATGGACAGCGGAGGAAAGCTGGAGGATGTTGGTCCGGCCAAAGTTGGGTCGGGAGACGACGTGGAGGACGAGTCCAGTTCATCGGCGGATGATGATGATGATGATCGTGACAAGTGTTTAAAAGCACAAGGTGAAGAACCCATGAAACGGAAGAGAAAGACAAGTGTGAGGAGCGGAAACAGGCTTGAAATTGAAAGGGTCGAGCTTTTTCTGGAAAGTCTGGTGAAGAAAGTGATGGAGCAGCATGAGCAGATGCATAAGCAGTTGATAGAGGTGATAGAAACGAATGAGAAAGAGAGATTAGCAAGAGAAGAAGCCTGGAAGCAGCAGGTGTTAGACAGACTGAAAAGGGATAAGGAGATAAGAGCCCAAGAGACATCTCGCAGCCTTGCGCTCATTTCCTTTATCCAGAATTATTTGGGCTCTGAAAATCAAGTCCCCCAACCATCACCATCACCAGTACCGGAACAAGCACCCGCACCAGCACTAGCACCAATACCATTATCGGTAGTACCTAATTATGATCATCAACGGGTGGAAGGAAATGGAAAGGCAGACAATGGCATGCAGGGAGACCTGATGTTGGTGAGTAGTGATGCAACGAATAGAAGATGGCCAGAAGCTGAAGTACAAGCCCTCATAACGCTGTGGGCTGCTTTCGAACACAAGTTTCACGTCGCAGGTACTCCAAAAGGGCGCATATGGGAGGAGATATCTGTTAAGATGGGAGAAATGGGCTACGTCCGGTCAGGAAGGAAGTGCAGGGAGAAATGGGAAAACATCAACAAGTATTTCAGAAGGTGCATGGGACCAGACAGTAAACGTTCTGCAAATGCCAAGCTTTGTCCATATTTTCATGAATTGGAGTTGCTCCACAAAAGCGGACTTGTAAGTTTCGGGAATGGCTTTAACCTCACAAGCAACCAGAATGAGGCCAAGATTGAAAAACAGGCGCAAAAGAGTGAAAAAAGGAGTGATGACGGTATTCAAGCCTCTTGTGCTTTAGATAACGGGGATGCAAGTGAAGGCAAGTTTCAGAGAGAGAGAGAGGGGGATGAGTTGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

413

Amino Acids

46.15

Weight (kDa)

5.61

Isoelectric Point (pI)

64.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 260 - 347 9.8e-21 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47660
fragaria_vesca FvH4_3g00330
malus_domestica MD05G1361500.v1.1 MD10G1338800.v1.1
prunus_persica Prupe.4G003900_v2.0.a1
pyrus_communis pycom05g32800 pycom10g28850
rosa_chinensis RchiOBHm_Chr5g0000511
rosa_laevigata RLG00000030873
rosa_multiflora Rmu_co7961544.1_g000001
rosa_roxburghii Rroxscaffold_1G00075670
rosa_rugosa Rorug04G0384300
rosa_samantha Rh5AG004200 Rh5BG005700 Rh5CG004600 Rh5DG004500 Rh5DG004600
rosa_wichuraiana Rw5G000430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 490
Acc36I ACCTGC 3 cut(s) 153, 490, 842
AccBSI CCGCTC 1 cut(s) 345
AccII CGCG 1 cut(s) 113
AclI AACGTT 1 cut(s) 994
AcoI YGGCCR 2 cut(s) 207, 785
AcuI CTGAAG 1 cut(s) 816
AcyI GRCGYC 2 cut(s) 42, 107
AdeI CACNNNGTG 1 cut(s) 302
AfaI GTAC 4 cut(s) 633, 684, 801, 856
AfiI CCNNNNNNNGG 6 cut(s) 21, 149, 216, 318, 754, 1102
AgsI TTSAA 4 cut(s) 359, 365, 1115, 1160
AjiI CACGTC 2 cut(s) 232, 847
AjnI CCWGG 1 cut(s) 488
AluBI AGCT 5 cut(s) 136, 190, 376, 794, 1012
AluI AGCT 5 cut(s) 136, 190, 376, 794, 1012
Alw21I GWGCWC 2 cut(s) 57, 80
Alw26I GTCTC 4 cut(s) 171, 219, 539, 738
AlwNI CAGNNNCTG 2 cut(s) 136, 794
AoxI GGCC 3 cut(s) 207, 785, 1104
ApeKI GCWGC 6 cut(s) 136, 153, 412, 496, 555, 824
ArsI GACNNNNNNTTYG 2 cut(s) 77, 109
AspLEI GCGC 3 cut(s) 565, 870, 1126
AspS9I GGNCC 2 cut(s) 203, 980
AsuHPI GGTGA 6 cut(s) 314, 406, 457, 612, 618, 769
AsuII TTCGAA 1 cut(s) 831
AvaII GGWCC 2 cut(s) 203, 980
BalI TGGCCA 1 cut(s) 787
BanII GRGCYC 2 cut(s) 541, 596
BarI GAAGNNNNNNTAC 2 cut(s) 783, 815
Bbv12I GWGCWC 2 cut(s) 57, 80
BbvI GCAGC 6 cut(s) 123, 165, 424, 508, 567, 811
BccI CCATC 6 cut(s) 166, 400, 625, 631, 777, 889
BciT130I CCWGG 1 cut(s) 490
BclI TGATCA 1 cut(s) 694
BcoDI GTCTC 4 cut(s) 171, 219, 539, 738
BfaI CTAG 1 cut(s) 659
BfuAI ACCTGC 3 cut(s) 153, 490, 842
Bme1390I CCNGG 1 cut(s) 490
Bme18I GGWCC 2 cut(s) 203, 980
BmgBI CACGTC 2 cut(s) 232, 847
BmgT120I GGNCC 2 cut(s) 203, 980
BmiI GGNNCC 2 cut(s) 117, 981
BmrFI CCNGG 1 cut(s) 490
BmsI GCATC 3 cut(s) 414, 757, 1177
BpmI CTGGAG 1 cut(s) 212
Bpu14I TTCGAA 1 cut(s) 831
BsaBI GATNNNNATC 1 cut(s) 273
BsaHI GRCGYC 2 cut(s) 42, 107
BsaI GGTCTC 2 cut(s) 171, 738
BsaJI CCNNGG 1 cut(s) 111
BsaWI WCCGGW 2 cut(s) 634, 915
BsaXI ACNNNNNCTCC 4 cut(s) 216, 227, 246, 257
Bsc4I CCNNNNNNNGG 6 cut(s) 21, 149, 216, 318, 754, 1102
Bse118I RCCGGY 1 cut(s) 14
Bse1I ACTGG 2 cut(s) 246, 629
Bse8I GATNNNNATC 1 cut(s) 273
BseBI CCWGG 1 cut(s) 490
BseDI CCNNGG 1 cut(s) 111
BseGI GGATG 4 cut(s) 202, 265, 1192, 1231
BseJI GATNNNNATC 1 cut(s) 273
BseLI CCNNNNNNNGG 6 cut(s) 21, 149, 216, 318, 754, 1102
BseMII CTCAG 1 cut(s) 63
BseNI ACTGG 2 cut(s) 246, 629
BseRI GAGGAG 2 cut(s) 355, 893
BseXI GCAGC 6 cut(s) 123, 165, 424, 508, 567, 811
BsgI GTGCAG 1 cut(s) 952
Bsh1236I CGCG 1 cut(s) 113
BshFI GGCC 3 cut(s) 209, 787, 1106
BsiHKAI GWGCWC 2 cut(s) 57, 80
BsiSI CCGG 4 cut(s) 15, 206, 635, 916
BslFI GGGAC 2 cut(s) 593, 993
BslI CCNNNNNNNGG 6 cut(s) 21, 149, 216, 318, 754, 1102
BsmAI GTCTC 4 cut(s) 171, 219, 539, 738
BsmBI CGTCTC 1 cut(s) 219
BsmFI GGGAC 2 cut(s) 593, 993
BsnI GGCC 3 cut(s) 209, 787, 1106
Bso31I GGTCTC 2 cut(s) 171, 738
Bsp119I TTCGAA 1 cut(s) 831
Bsp1286I GDGCHC 4 cut(s) 57, 80, 541, 596
Bsp143I GATC 2 cut(s) 274, 694
BspANI GGCC 3 cut(s) 209, 787, 1106
BspCNI CTCAG 1 cut(s) 64
BspFNI CGCG 1 cut(s) 113
BspHI TCATGA 1 cut(s) 1027
BspLI GGNNCC 2 cut(s) 117, 981
BspMI ACCTGC 3 cut(s) 153, 490, 842
BspT104I TTCGAA 1 cut(s) 831
BspTNI GGTCTC 2 cut(s) 171, 738
BsrBI CCGCTC 1 cut(s) 345
BsrFI RCCGGY 1 cut(s) 14
BsrI ACTGG 2 cut(s) 246, 629
BssAI RCCGGY 1 cut(s) 14
BssECI CCNNGG 1 cut(s) 111
BssMI GATC 2 cut(s) 274, 694
BssNI GRCGYC 2 cut(s) 42, 107
Bst2UI CCWGG 1 cut(s) 490
Bst4CI ACNGT 2 cut(s) 989, 1154
Bst6I CTCTTC 1 cut(s) 317
BstACI GRCGYC 2 cut(s) 42, 107
BstBI TTCGAA 1 cut(s) 831
BstC8I GCNNGC 3 cut(s) 20, 111, 737
BstDEI CTNAG 1 cut(s) 72
BstDSI CCRYGG 1 cut(s) 111
BstF5I GGATG 4 cut(s) 202, 265, 1192, 1231
BstFNI CGCG 1 cut(s) 113
BstHHI GCGC 3 cut(s) 565, 870, 1126
BstKTI GATC 2 cut(s) 277, 697
BstMAI GTCTC 4 cut(s) 171, 219, 539, 738
BstMBI GATC 2 cut(s) 274, 694
BstMWI GCNNNNNNNGC 4 cut(s) 133, 159, 418, 1169
BstNI CCWGG 1 cut(s) 490
BstNSI RCATGY 1 cut(s) 739
BstSCI CCNGG 1 cut(s) 488
BstUI CGCG 1 cut(s) 113
BstV1I GCAGC 6 cut(s) 123, 165, 424, 508, 567, 811
BsuRI GGCC 3 cut(s) 209, 787, 1106
BtgI CCRYGG 1 cut(s) 111
BtrI CACGTC 2 cut(s) 232, 847
BtsCI GGATG 4 cut(s) 202, 265, 1192, 1231
BveI ACCTGC 3 cut(s) 153, 490, 842
Cac8I GCNNGC 3 cut(s) 20, 111, 737
CaiI CAGNNNCTG 2 cut(s) 136, 794
CciI TCATGA 1 cut(s) 1027
CfoI GCGC 3 cut(s) 565, 870, 1126
Cfr10I RCCGGY 1 cut(s) 14
Cfr13I GGNCC 2 cut(s) 203, 980
Cfr42I CCGCGG 1 cut(s) 114
CseI GACGC 3 cut(s) 50, 115, 128
Csp6I GTAC 4 cut(s) 632, 683, 800, 855
CviAII CATG 5 cut(s) 313, 416, 736, 976, 1028
CviQI GTAC 4 cut(s) 632, 683, 800, 855
DdeI CTNAG 1 cut(s) 72
DpnI GATC 2 cut(s) 276, 696
DpnII GATC 2 cut(s) 274, 694
DraI TTTAAA 1 cut(s) 291
DraIII CACNNNGTG 1 cut(s) 302
EaeI YGGCCR 2 cut(s) 207, 785
Eam1104I CTCTTC 1 cut(s) 317
EarI CTCTTC 1 cut(s) 317
EciI GGCGGA 1 cut(s) 272
Eco24I GRGCYC 2 cut(s) 541, 596
Eco31I GGTCTC 2 cut(s) 171, 738
Eco32I GATATC 1 cut(s) 885
Eco47I GGWCC 2 cut(s) 203, 980
Eco57I CTGAAG 1 cut(s) 816
EcoRII CCWGG 1 cut(s) 488
EcoRV GATATC 1 cut(s) 885
EcoT22I ATGCAT 1 cut(s) 429
EcoT38I GRGCYC 2 cut(s) 541, 596
Esp3I CGTCTC 1 cut(s) 219
FaeI CATG 5 cut(s) 316, 419, 739, 979, 1031
FaqI GGGAC 2 cut(s) 593, 993
FatI CATG 5 cut(s) 312, 415, 735, 975, 1027
FauI CCCGC 3 cut(s) 11, 118, 655
FauNDI CATATG 1 cut(s) 872
FbaI TGATCA 1 cut(s) 694
FokI GGATG 3 cut(s) 209, 272, 1199
FriOI GRGCYC 2 cut(s) 541, 596
FspBI CTAG 1 cut(s) 659
GlaI GCGC 3 cut(s) 564, 869, 1125
GsuI CTGGAG 1 cut(s) 212
HaeIII GGCC 3 cut(s) 209, 787, 1106
HapII CCGG 4 cut(s) 15, 206, 635, 916
HgaI GACGC 3 cut(s) 50, 115, 128
HhaI GCGC 3 cut(s) 565, 870, 1126
Hin1I GRCGYC 2 cut(s) 42, 107
Hin1II CATG 5 cut(s) 316, 419, 739, 979, 1031
Hin6I GCGC 3 cut(s) 563, 868, 1124
HinP1I GCGC 3 cut(s) 563, 868, 1124
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HindIII AAGCTT 1 cut(s) 1010
HinfI GANTC 2 cut(s) 100, 242
HpaI GTTAAC 1 cut(s) 12
HpaII CCGG 4 cut(s) 15, 206, 635, 916
HphI GGTGA 6 cut(s) 314, 406, 457, 612, 618, 769
Hpy166II GTNNAC 2 cut(s) 12, 992
Hpy188I TCNGA 6 cut(s) 40, 105, 171, 598, 968, 1209
Hpy188III TCNNGA 8 cut(s) 97, 222, 278, 383, 580, 921, 1028, 1069
Hpy8I GTNNAC 2 cut(s) 12, 992
Hpy99I CGWCG 3 cut(s) 109, 233, 851
HpyAV CCTTC 4 cut(s) 704, 918, 963, 1190
HpyCH4III ACNGT 2 cut(s) 989, 1154
HpyCH4IV ACGT 4 cut(s) 231, 846, 912, 994
HpyCH4V TGCA 7 cut(s) 427, 739, 770, 933, 975, 1001, 1190
HpyF10VI GCNNNNNNNGC 4 cut(s) 133, 159, 418, 1169
HpyF3I CTNAG 1 cut(s) 72
HpySE526I ACGT 4 cut(s) 231, 846, 912, 994
Hsp92I GRCGYC 2 cut(s) 42, 107
Hsp92II CATG 5 cut(s) 316, 419, 739, 979, 1031
HspAI GCGC 3 cut(s) 563, 868, 1124
Ksp22I TGATCA 1 cut(s) 694
KspAI GTTAAC 1 cut(s) 12
KspI CCGCGG 1 cut(s) 114
Kzo9I GATC 2 cut(s) 274, 694
LmnI GCTCC 3 cut(s) 342, 409, 1047
Lsp1109I GCAGC 6 cut(s) 123, 165, 424, 508, 567, 811
LweI GCATC 3 cut(s) 414, 757, 1177
MaeI CTAG 1 cut(s) 659
MaeII ACGT 4 cut(s) 231, 846, 912, 994
MaeIII GTNAC 2 cut(s) 27, 278
MalI GATC 2 cut(s) 276, 696
MbiI CCGCTC 1 cut(s) 345
MboI GATC 2 cut(s) 274, 694
MboII GAAGA 5 cut(s) 317, 334, 409, 494, 792
MhlI GDGCHC 4 cut(s) 57, 80, 541, 596
MlsI TGGCCA 1 cut(s) 787
MluCI AATT 4 cut(s) 360, 583, 688, 1031
MluNI TGGCCA 1 cut(s) 787
MlyI GAGTC 1 cut(s) 251
MmeI TCCRAC 1 cut(s) 128
Mox20I TGGCCA 1 cut(s) 787
Mph1103I ATGCAT 1 cut(s) 429
MscI TGGCCA 1 cut(s) 787
MseI TTAA 4 cut(s) 11, 290, 891, 1080
Msp20I TGGCCA 1 cut(s) 787
MspA1I CMGCKG 3 cut(s) 113, 156, 180
MspI CCGG 4 cut(s) 15, 206, 635, 916
MspR9I CCNGG 1 cut(s) 490
MvaI CCWGG 1 cut(s) 490
MvnI CGCG 1 cut(s) 113
MwoI GCNNNNNNNGC 4 cut(s) 133, 159, 418, 1169
NdeI CATATG 1 cut(s) 872
NdeII GATC 2 cut(s) 274, 694
NlaIII CATG 5 cut(s) 316, 419, 739, 979, 1031
NlaIV GGNNCC 2 cut(s) 117, 981
NmuCI GTSAC 1 cut(s) 278
NsiI ATGCAT 1 cut(s) 429
NspI RCATGY 1 cut(s) 739
NspV TTCGAA 1 cut(s) 831
PaeI GCATGC 1 cut(s) 739
PagI TCATGA 1 cut(s) 1027
PaqCI CACCTGC 1 cut(s) 490
PcsI WCGNNNNNNNCGW 1 cut(s) 237
PfeI GAWTC 1 cut(s) 100
PleI GAGTC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 250
Psp1406I AACGTT 1 cut(s) 994
Psp6I CCWGG 1 cut(s) 488
PspGI CCWGG 1 cut(s) 488
PspN4I GGNNCC 2 cut(s) 117, 981
PspPI GGNCC 2 cut(s) 203, 980
PstNI CAGNNNCTG 2 cut(s) 136, 794
RsaI GTAC 4 cut(s) 633, 684, 801, 856
RsaNI GTAC 4 cut(s) 632, 683, 800, 855
SacII CCGCGG 1 cut(s) 114
SaqAI TTAA 4 cut(s) 11, 290, 891, 1080
Sau3AI GATC 2 cut(s) 274, 694
Sau96I GGNCC 2 cut(s) 203, 980
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 1 cut(s) 490
SduI GDGCHC 4 cut(s) 57, 80, 541, 596
SfaNI GCATC 3 cut(s) 414, 757, 1177
Sfr303I CCGCGG 1 cut(s) 114
SfuI TTCGAA 1 cut(s) 831
SgrBI CCGCGG 1 cut(s) 114
SinI GGWCC 2 cut(s) 203, 980
SphI GCATGC 1 cut(s) 739
Sse9I AATT 4 cut(s) 360, 583, 688, 1031
SspMI CTAG 1 cut(s) 659
StyD4I CCNGG 1 cut(s) 488
TaaI ACNGT 2 cut(s) 989, 1154
TaiI ACGT 4 cut(s) 234, 849, 915, 997
TaqI TCGA 3 cut(s) 96, 372, 831
TasI AATT 4 cut(s) 360, 583, 688, 1031
TatI WGTACW 1 cut(s) 799
TauI GCSGC 4 cut(s) 25, 127, 159, 162
TfiI GAWTC 1 cut(s) 100
Tru1I TTAA 4 cut(s) 11, 290, 891, 1080
Tru9I TTAA 4 cut(s) 11, 290, 891, 1080
TseFI GTSAC 1 cut(s) 278
TseI GCWGC 6 cut(s) 136, 153, 412, 496, 555, 824
Tsp45I GTSAC 1 cut(s) 278
TspDTI ATGAA 4 cut(s) 240, 329, 1016, 1044
TspGWI ACGGA 1 cut(s) 334
VpaK11BI GGWCC 2 cut(s) 203, 980
XceI RCATGY 1 cut(s) 739
XspI CTAG 1 cut(s) 659
Zsp2I ATGCAT 1 cut(s) 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.