Rmu_co7961544.1_g000001
MYB Family

Trihelix transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co7961544.1
OG0013499
Physical Location & Seq
Forward (+)
1 .. 417
417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co7961544.1_g000001.1.cds

Sequence Viewer

Length: 417 bp
agccatggatctctatgggaggagatagctcttgggatgaaccgtatgggctttgatcgctcgggaaggaagtgtaaagaaaaatgggaaaacatgaacaagtacttcaaaagggcaatcaccaatgacaagaagcgtcctacaaatgctaagacttgtcagtattttaatgaattggagttgctctacaaaaacggacttctaaatctggggaatggctttagtcccacaagcagtctggggaatggctttagttgcacaagcaaccagaaggagaccaggagtgaaaacgagtcccaacagtgcgtgctcagcaacgttgacactagtcttctaacttgtgccacaataccatctgtgttaaattcaaatgaagctgccgaaagaacgagagcagtggtttctcctgctctttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

138

Amino Acids

15.39

Weight (kDa)

8.87

Isoelectric Point (pI)

36.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47660
fragaria_vesca FvH4_3g00330
malus_domestica MD05G1361500.v1.1 MD10G1338800.v1.1
prunus_persica Prupe.4G003900_v2.0.a1
pyrus_communis pycom05g32800 pycom10g28850
rosa_chinensis RchiOBHm_Chr5g0000511
rosa_laevigata RLG00000030873
rosa_multiflora Rmu_co7961544.1_g000001
rosa_roxburghii Rroxscaffold_1G00075670
rosa_rugosa Rorug04G0384300
rosa_samantha Rh5AG004200 Rh5BG005700 Rh5CG004600 Rh5DG004500 Rh5DG004600
rosa_wichuraiana Rw5G000430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 318
AclWI GGATC 1 cut(s) 16
AcsI RAATTY 1 cut(s) 364
AfaI GTAC 1 cut(s) 104
AgsI TTSAA 2 cut(s) 109, 369
AhlI ACTAGT 1 cut(s) 326
AjnI CCWGG 1 cut(s) 278
AluBI AGCT 2 cut(s) 29, 377
AluI AGCT 2 cut(s) 29, 377
Alw21I GWGCWC 1 cut(s) 312
Alw26I GTCTC 1 cut(s) 269
AlwI GGATC 1 cut(s) 16
Ama87I CYCGRG 1 cut(s) 61
ApeKI GCWGC 1 cut(s) 377
ApoI RAATTY 1 cut(s) 364
AsuHPI GGTGA 1 cut(s) 112
AvaI CYCGRG 1 cut(s) 61
BbsI GAAGAC 1 cut(s) 323
Bbv12I GWGCWC 1 cut(s) 312
BbvI GCAGC 1 cut(s) 364
BccI CCATC 1 cut(s) 361
BciT130I CCWGG 1 cut(s) 280
BcoDI GTCTC 1 cut(s) 269
BcuI ACTAGT 1 cut(s) 326
BfaI CTAG 1 cut(s) 327
BisI GCNGC 1 cut(s) 378
BlpI GCTNAGC 1 cut(s) 311
BlsI GCNGC 1 cut(s) 379
BmcAI AGTACT 1 cut(s) 104
Bme1390I CCNGG 1 cut(s) 280
BmeT110I CYCGRG 1 cut(s) 61
BmrFI CCNGG 1 cut(s) 280
BoxI GACNNNNGTC 1 cut(s) 327
BpiI GAAGAC 1 cut(s) 323
Bpu1102I GCTNAGC 1 cut(s) 311
BsaI GGTCTC 1 cut(s) 269
BsaJI CCNNGG 1 cut(s) 4
BseBI CCWGG 1 cut(s) 280
BseDI CCNNGG 1 cut(s) 4
BseGI GGATG 1 cut(s) 42
BseMII CTCAG 1 cut(s) 325
BseRI GAGGAG 1 cut(s) 35
BseXI GCAGC 1 cut(s) 364
BsiHKAI GWGCWC 1 cut(s) 312
BsiHKCI CYCGRG 1 cut(s) 61
BslFI GGGAC 2 cut(s) 210, 280
BsmAI GTCTC 1 cut(s) 269
BsmFI GGGAC 2 cut(s) 210, 280
Bso31I GGTCTC 1 cut(s) 269
BsoBI CYCGRG 1 cut(s) 61
Bsp1286I GDGCHC 1 cut(s) 312
Bsp143I GATC 2 cut(s) 8, 55
Bsp1720I GCTNAGC 1 cut(s) 311
Bsp19I CCATGG 1 cut(s) 4
BspCNI CTCAG 1 cut(s) 324
BspPI GGATC 1 cut(s) 16
BspTNI GGTCTC 1 cut(s) 269
BssECI CCNNGG 1 cut(s) 4
BssMI GATC 2 cut(s) 8, 55
BssT1I CCWWGG 1 cut(s) 4
Bst2UI CCWGG 1 cut(s) 280
Bst4CI ACNGT 2 cut(s) 44, 303
BstC8I GCNNGC 1 cut(s) 308
BstDEI CTNAG 2 cut(s) 150, 311
BstDSI CCRYGG 1 cut(s) 4
BstF5I GGATG 1 cut(s) 42
BstKTI GATC 2 cut(s) 11, 58
BstMAI GTCTC 1 cut(s) 269
BstMBI GATC 2 cut(s) 8, 55
BstMWI GCNNNNNNNGC 3 cut(s) 57, 255, 312
BstNI CCWGG 1 cut(s) 280
BstPAI GACNNNNGTC 1 cut(s) 327
BstSCI CCNGG 1 cut(s) 278
BstV1I GCAGC 1 cut(s) 364
BstV2I GAAGAC 1 cut(s) 323
BstX2I RGATCY 1 cut(s) 8
BstYI RGATCY 1 cut(s) 8
BtgI CCRYGG 1 cut(s) 4
BtsCI GGATG 1 cut(s) 42
BtsI GCAGTG 1 cut(s) 402
BtsIMutI CAGTG 2 cut(s) 308, 402
Cac8I GCNNGC 1 cut(s) 308
CseI GACGC 1 cut(s) 125
Csp6I GTAC 1 cut(s) 103
CviAII CATG 2 cut(s) 5, 94
CviJI RGCY 6 cut(s) 3, 29, 51, 219, 249, 377
CviKI_1 RGCY 6 cut(s) 3, 29, 51, 219, 249, 377
CviQI GTAC 1 cut(s) 103
DdeI CTNAG 2 cut(s) 150, 311
DpnI GATC 2 cut(s) 10, 57
DpnII GATC 2 cut(s) 8, 55
Eco130I CCWWGG 1 cut(s) 4
Eco31I GGTCTC 1 cut(s) 269
Eco88I CYCGRG 1 cut(s) 61
EcoRII CCWGG 1 cut(s) 278
EcoT14I CCWWGG 1 cut(s) 4
ErhI CCWWGG 1 cut(s) 4
FaeI CATG 2 cut(s) 8, 97
FaiI YATR 4 cut(s) 6, 16, 47, 95
FaqI GGGAC 2 cut(s) 210, 280
FatI CATG 2 cut(s) 4, 93
Fnu4HI GCNGC 1 cut(s) 378
FokI GGATG 1 cut(s) 49
Fsp4HI GCNGC 1 cut(s) 378
FspBI CTAG 1 cut(s) 327
GluI GCNGC 1 cut(s) 378
HgaI GACGC 1 cut(s) 125
Hin1II CATG 2 cut(s) 8, 97
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HinfI GANTC 1 cut(s) 293
HphI GGTGA 1 cut(s) 112
Hpy166II GTNNAC 1 cut(s) 322
Hpy188III TCNNGA 1 cut(s) 63
Hpy8I GTNNAC 1 cut(s) 322
HpyAV CCTTC 2 cut(s) 60, 265
HpyCH4III ACNGT 2 cut(s) 44, 303
HpyCH4IV ACGT 1 cut(s) 318
HpyCH4V TGCA 1 cut(s) 258
HpyF10VI GCNNNNNNNGC 3 cut(s) 57, 255, 312
HpyF3I CTNAG 2 cut(s) 150, 311
HpySE526I ACGT 1 cut(s) 318
Hsp92II CATG 2 cut(s) 8, 97
Kzo9I GATC 2 cut(s) 8, 55
LpnPI CCDG 5 cut(s) 194, 224, 265, 281, 292
Lsp1109I GCAGC 1 cut(s) 364
MaeI CTAG 1 cut(s) 327
MaeII ACGT 1 cut(s) 318
MalI GATC 2 cut(s) 10, 57
MboI GATC 2 cut(s) 8, 55
MboII GAAGA 1 cut(s) 323
MflI RGATCY 1 cut(s) 8
MhlI GDGCHC 1 cut(s) 312
MluCI AATT 2 cut(s) 173, 364
MlyI GAGTC 1 cut(s) 302
MnlI CCTC 1 cut(s) 13
MseI TTAA 3 cut(s) 168, 362, 415
MspR9I CCNGG 1 cut(s) 280
MvaI CCWGG 1 cut(s) 280
MwoI GCNNNNNNNGC 3 cut(s) 57, 255, 312
NcoI CCATGG 1 cut(s) 4
NdeII GATC 2 cut(s) 8, 55
NlaIII CATG 2 cut(s) 8, 97
PkrI GCNGC 1 cut(s) 379
PleI GAGTC 1 cut(s) 301
PpsI GAGTC 1 cut(s) 301
PshAI GACNNNNGTC 1 cut(s) 327
Psp1406I AACGTT 1 cut(s) 318
Psp6I CCWGG 1 cut(s) 278
PspGI CCWGG 1 cut(s) 278
PsuI RGATCY 1 cut(s) 8
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
SaqAI TTAA 3 cut(s) 168, 362, 415
SatI GCNGC 1 cut(s) 378
Sau3AI GATC 2 cut(s) 8, 55
ScaI AGTACT 1 cut(s) 104
SchI GAGTC 1 cut(s) 302
ScrFI CCNGG 1 cut(s) 280
SduI GDGCHC 1 cut(s) 312
SetI ASST 3 cut(s) 31, 321, 379
SpeI ACTAGT 1 cut(s) 326
Sse9I AATT 2 cut(s) 173, 364
SspMI CTAG 1 cut(s) 327
StyD4I CCNGG 1 cut(s) 278
StyI CCWWGG 1 cut(s) 4
TaaI ACNGT 2 cut(s) 44, 303
TaiI ACGT 1 cut(s) 321
TasI AATT 2 cut(s) 173, 364
TatI WGTACW 1 cut(s) 102
Tru1I TTAA 3 cut(s) 168, 362, 415
Tru9I TTAA 3 cut(s) 168, 362, 415
TscAI CASTG 2 cut(s) 308, 402
TseI GCWGC 1 cut(s) 377
TspDTI ATGAA 4 cut(s) 53, 110, 186, 387
TspGWI ACGGA 1 cut(s) 210
TspRI CASTG 2 cut(s) 308, 402
XapI RAATTY 1 cut(s) 364
XcmI CCANNNNNNNNNTGG 1 cut(s) 235
XspI CTAG 1 cut(s) 327
ZrmI AGTACT 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.