Rh5BG005700
MYB Family

Trihelix transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0013499
Physical Location & Seq
Reverse (-)
448132 .. 449832
1701 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG005700.1

Sequence Viewer

Length: 1272 bp
ATGGAGGTGTTGACCGGCGACCGGAATATACCAGACCCAGCAGCGGCAGCGGCAGCAGAAGAAGAACAAGTCTTCCCGGCGCACATATCCCCATTCTCTGAGACACACCAAGTTGTCTTCGCCAATCCAACGGCGGCTGCTATGACTATGACTATGACGCCGCAGAAGCTCCGTATCAGGTGCAACGGAAGGTCTCCTGCCGTCGACGCAGCACCAACTCAGCTAGATCCGCCCCAACTCGGCTCCGCTGACAACGGCTTGTCACCACATAATGCTGATGAGCATTTTAAAGCACAAGGGGTAGTAGAATTCGTGAATTGGAAGCAGAAGAGGAAGAGAACATCATCTTGTACTAGTACAAGAAAAAAGAGCAAAAGGCTTGAAATGCTGGAGCATTTTCTGGAAAGTCTGGTAAACAAAATGATGGAGAAGCAAGAGCAGATGCATAAGCAGTTGATAGAGATGGTACAAGACAGGGAGAAAGAGAGAATAGCCAAAGAAGAAGCCTGGAAACAGCACGAGTTGGAGAGAATCACAAGGGATGAGGAGGTAAGAGCCCAAGAGACATCGCGCAGCCTTGCCCTCATTAACTTTGTACAGAGTTTGTCGGGCAGTGATGTTGTTCAAGTTCCCCAACCAGCACCACTCGTAGCACAACCAGTGGCAACAGTACAACCTCCTACTTCCAATCAATATCATCAACGTGTGGAAGAAAATAAAAATCTTCACAAAGACACAGCGATTGCCAAGTGTATTGCAACACCAACTGATAAAAGATGGCTCCAATTTGAAGTACGGGCACTCATAGCGCTGCGGACTAGTTTGGAACATAAGTTTCACACCCCAATTAATTCTAGCCATGGATCTCTATGGGAGGAGATAGCTCTTGGGATGAACCGTATGGGCTTTGATCGCTCAGGAAGGAAGTGTAAAGAAAAATGGGAAAACATGAACAAGTACTTCAAAAGGGCAATCACAAATGACAAGAAGCGTCCTGCAAATGCTAAGACTTGTCTGTATTTTAATGAATTGGAGTTGCTCTACAAAAACGGACTTCTAAATCTGGGCAATGGCTTTAGTCCCACAAGCAGTCTGGGGAATGGCTTTAGTTGCACAAGCAACCAGAAGGAGACCAAGAGTGAAAACGAGTCCCAACAGTGCGTGCTCAGCAACGTTGACACTAGTCTTCTAACTTGTGCCACAATACCATCGGTGTTAAATTCAAATGAAGCTGCCGAAAGAACGAGAGCAGTGGTTTCTCCTGCTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

423

Amino Acids

47.52

Weight (kDa)

8.52

Isoelectric Point (pI)

54.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 258 - 346 4.1e-19 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47660
fragaria_vesca FvH4_3g00330
malus_domestica MD05G1361500.v1.1 MD10G1338800.v1.1
prunus_persica Prupe.4G003900_v2.0.a1
pyrus_communis pycom05g32800 pycom10g28850
rosa_chinensis RchiOBHm_Chr5g0000511
rosa_laevigata RLG00000030873
rosa_multiflora Rmu_co7961544.1_g000001
rosa_roxburghii Rroxscaffold_1G00075670
rosa_rugosa Rorug04G0384300
rosa_samantha Rh5AG004200 Rh5BG005700 Rh5CG004600 Rh5DG004500 Rh5DG004600
rosa_wichuraiana Rw5G000430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 204
AccII CGCG 1 cut(s) 571
AciI CCGC 7 cut(s) 44, 50, 134, 161, 230, 246, 814
AclI AACGTT 1 cut(s) 1173
AclWI GGATC 2 cut(s) 221, 871
AcsI RAATTY 2 cut(s) 308, 1219
AcyI GRCGYC 1 cut(s) 158
AfaI GTAC 7 cut(s) 352, 358, 468, 597, 672, 795, 959
AfeI AGCGCT 1 cut(s) 810
AfiI CCNNNNNNNGG 3 cut(s) 21, 43, 239
AflIII ACRYGT 1 cut(s) 703
AgsI TTSAA 5 cut(s) 383, 626, 791, 964, 1224
AhlI ACTAGT 3 cut(s) 353, 818, 1181
AjnI CCWGG 1 cut(s) 506
AloI GAACNNNNNNTCC 2 cut(s) 57, 89
AluBI AGCT 4 cut(s) 169, 223, 884, 1232
AluI AGCT 4 cut(s) 169, 223, 884, 1232
Alw21I GWGCWC 1 cut(s) 1167
Alw26I GTCTC 4 cut(s) 95, 198, 557, 1124
AlwI GGATC 2 cut(s) 221, 871
Aor51HI AGCGCT 1 cut(s) 810
ApeKI GCWGC 8 cut(s) 41, 47, 53, 137, 209, 573, 811, 1232
ApoI RAATTY 2 cut(s) 308, 1219
AseI ATTAAT 1 cut(s) 849
AspLEI GCGC 3 cut(s) 82, 573, 811
AsuC2I CCSGG 1 cut(s) 77
AsuHPI GGTGA 1 cut(s) 255
BaeGI GKGCMC 1 cut(s) 802
BanII GRGCYC 1 cut(s) 559
BauI CACGAG 1 cut(s) 518
BbsI GAAGAC 3 cut(s) 64, 109, 1178
Bbv12I GWGCWC 1 cut(s) 1167
BbvI GCAGC 8 cut(s) 53, 59, 65, 124, 221, 585, 798, 1219
BccI CCATC 4 cut(s) 418, 457, 771, 1216
BceAI ACGGC 3 cut(s) 147, 185, 271
BciT130I CCWGG 1 cut(s) 508
BcnI CCSGG 1 cut(s) 77
BcoDI GTCTC 4 cut(s) 95, 198, 557, 1124
BcuI ACTAGT 3 cut(s) 353, 818, 1181
BfaI CTAG 5 cut(s) 224, 354, 819, 855, 1182
BfoI RGCGCY 1 cut(s) 812
BlpI GCTNAGC 1 cut(s) 1166
BmcAI AGTACT 1 cut(s) 959
Bme1390I CCNGG 2 cut(s) 77, 508
BmiI GGNNCC 2 cut(s) 244, 782
BmrFI CCNGG 2 cut(s) 77, 508
BmsI GCATC 1 cut(s) 432
BoxI GACNNNNGTC 1 cut(s) 1182
BpiI GAAGAC 3 cut(s) 64, 109, 1178
BpmI CTGGAG 1 cut(s) 410
Bpu10I CCTNAGC 1 cut(s) 916
Bpu1102I GCTNAGC 1 cut(s) 1166
BpuMI CCSGG 1 cut(s) 77
BsaHI GRCGYC 1 cut(s) 158
BsaI GGTCTC 2 cut(s) 198, 1124
BsaJI CCNNGG 1 cut(s) 859
BsaWI WCCGGW 1 cut(s) 21
Bsc4I CCNNNNNNNGG 3 cut(s) 21, 43, 239
Bse118I RCCGGY 1 cut(s) 14
Bse1I ACTGG 1 cut(s) 659
Bse3DI GCAATG 1 cut(s) 1075
BseBI CCWGG 1 cut(s) 508
BseDI CCNNGG 1 cut(s) 859
BseGI GGATG 2 cut(s) 547, 897
BseLI CCNNNNNNNGG 3 cut(s) 21, 43, 239
BseMI GCAATG 1 cut(s) 1075
BseMII CTCAG 4 cut(s) 90, 233, 930, 1180
BseNI ACTGG 1 cut(s) 659
BseRI GAGGAG 2 cut(s) 560, 890
BseSI GKGCMC 1 cut(s) 802
BseXI GCAGC 8 cut(s) 53, 59, 65, 124, 221, 585, 798, 1219
BseYI CCCAGC 1 cut(s) 37
Bsh1236I CGCG 1 cut(s) 571
Bsh1285I CGRYCG 1 cut(s) 22
BsiEI CGRYCG 1 cut(s) 22
BsiHKAI GWGCWC 1 cut(s) 1167
BsiSI CCGG 3 cut(s) 15, 22, 77
BslFI GGGAC 2 cut(s) 1065, 1135
BslI CCNNNNNNNGG 3 cut(s) 21, 43, 239
BsmAI GTCTC 4 cut(s) 95, 198, 557, 1124
BsmFI GGGAC 2 cut(s) 1065, 1135
Bso31I GGTCTC 2 cut(s) 198, 1124
Bsp1286I GDGCHC 3 cut(s) 559, 802, 1167
Bsp1407I TGTACA 1 cut(s) 595
Bsp143I GATC 3 cut(s) 226, 863, 910
Bsp1720I GCTNAGC 1 cut(s) 1166
Bsp19I CCATGG 1 cut(s) 859
BspACI CCGC 7 cut(s) 44, 50, 134, 161, 230, 246, 814
BspCNI CTCAG 4 cut(s) 91, 232, 929, 1179
BspFNI CGCG 1 cut(s) 571
BspLI GGNNCC 2 cut(s) 244, 782
BspPI GGATC 2 cut(s) 221, 871
BspTNI GGTCTC 2 cut(s) 198, 1124
BsrDI GCAATG 1 cut(s) 1075
BsrFI RCCGGY 1 cut(s) 14
BsrGI TGTACA 1 cut(s) 595
BsrI ACTGG 1 cut(s) 659
BssAI RCCGGY 1 cut(s) 14
BssECI CCNNGG 1 cut(s) 859
BssMI GATC 3 cut(s) 226, 863, 910
BssNI GRCGYC 1 cut(s) 158
BssSI CACGAG 1 cut(s) 518
BssT1I CCWWGG 1 cut(s) 859
Bst2BI CACGAG 1 cut(s) 518
Bst2UI CCWGG 1 cut(s) 508
Bst4CI ACNGT 3 cut(s) 670, 899, 1158
Bst6I CTCTTC 2 cut(s) 323, 329
BstACI GRCGYC 1 cut(s) 158
BstAUI TGTACA 1 cut(s) 595
BstC8I GCNNGC 1 cut(s) 1163
BstDEI CTNAG 5 cut(s) 99, 219, 916, 1005, 1166
BstDSI CCRYGG 1 cut(s) 859
BstF5I GGATG 2 cut(s) 547, 897
BstFNI CGCG 1 cut(s) 571
BstH2I RGCGCY 1 cut(s) 812
BstHHI GCGC 3 cut(s) 82, 573, 811
BstKTI GATC 3 cut(s) 229, 866, 913
BstMAI GTCTC 4 cut(s) 95, 198, 557, 1124
BstMBI GATC 3 cut(s) 226, 863, 910
BstMCI CGRYCG 1 cut(s) 22
BstNI CCWGG 1 cut(s) 508
BstPAI GACNNNNGTC 1 cut(s) 1182
BstSCI CCNGG 2 cut(s) 75, 506
BstSLI GKGCMC 1 cut(s) 802
BstUI CGCG 1 cut(s) 571
BstV1I GCAGC 8 cut(s) 53, 59, 65, 124, 221, 585, 798, 1219
BstV2I GAAGAC 3 cut(s) 64, 109, 1178
BstX2I RGATCY 2 cut(s) 226, 863
BstYI RGATCY 2 cut(s) 226, 863
BtgI CCRYGG 1 cut(s) 859
BtgZI GCGATG 1 cut(s) 552
BtsCI GGATG 2 cut(s) 547, 897
BtsI GCAGTG 2 cut(s) 619, 1257
BtsIMutI CAGTG 4 cut(s) 619, 666, 1163, 1257
Cac8I GCNNGC 1 cut(s) 1163
CfoI GCGC 3 cut(s) 82, 573, 811
Cfr10I RCCGGY 1 cut(s) 14
CseI GACGC 3 cut(s) 166, 215, 980
Csp6I GTAC 7 cut(s) 351, 357, 467, 596, 671, 794, 958
CviAII CATG 2 cut(s) 860, 949
CviQI GTAC 7 cut(s) 351, 357, 467, 596, 671, 794, 958
DdeI CTNAG 5 cut(s) 99, 219, 916, 1005, 1166
DpnI GATC 3 cut(s) 228, 865, 912
DpnII GATC 3 cut(s) 226, 863, 910
DraI TTTAAA 1 cut(s) 289
Eam1104I CTCTTC 2 cut(s) 323, 329
EarI CTCTTC 2 cut(s) 323, 329
EciI GGCGGA 1 cut(s) 219
Eco130I CCWWGG 1 cut(s) 859
Eco24I GRGCYC 1 cut(s) 559
Eco31I GGTCTC 2 cut(s) 198, 1124
Eco47III AGCGCT 1 cut(s) 810
EcoRI GAATTC 1 cut(s) 308
EcoRII CCWGG 1 cut(s) 506
EcoT14I CCWWGG 1 cut(s) 859
EcoT22I ATGCAT 1 cut(s) 447
EcoT38I GRGCYC 1 cut(s) 559
ErhI CCWWGG 1 cut(s) 859
FaeI CATG 2 cut(s) 863, 952
FaqI GGGAC 2 cut(s) 1065, 1135
FatI CATG 2 cut(s) 859, 948
FblI GTMKAC 1 cut(s) 204
FokI GGATG 2 cut(s) 554, 904
FriOI GRGCYC 1 cut(s) 559
FspBI CTAG 5 cut(s) 224, 354, 819, 855, 1182
GlaI GCGC 3 cut(s) 81, 572, 810
GsaI CCCAGC 1 cut(s) 41
GsuI CTGGAG 1 cut(s) 410
HaeII RGCGCY 1 cut(s) 812
HapII CCGG 3 cut(s) 15, 22, 77
HgaI GACGC 3 cut(s) 166, 215, 980
HhaI GCGC 3 cut(s) 82, 573, 811
Hin1I GRCGYC 1 cut(s) 158
Hin1II CATG 2 cut(s) 863, 952
Hin6I GCGC 3 cut(s) 80, 571, 809
HinP1I GCGC 3 cut(s) 80, 571, 809
HincII GTYRAC 3 cut(s) 12, 205, 1177
HindII GTYRAC 3 cut(s) 12, 205, 1177
HinfI GANTC 2 cut(s) 531, 1148
HpaII CCGG 3 cut(s) 15, 22, 77
HphI GGTGA 1 cut(s) 255
Hpy166II GTNNAC 4 cut(s) 12, 205, 415, 1177
Hpy188I TCNGA 1 cut(s) 100
Hpy188III TCNNGA 3 cut(s) 313, 401, 918
Hpy8I GTNNAC 4 cut(s) 12, 205, 415, 1177
Hpy99I CGWCG 2 cut(s) 206, 209
HpyAV CCTTC 3 cut(s) 183, 915, 1120
HpyCH4III ACNGT 3 cut(s) 670, 899, 1158
HpyCH4IV ACGT 2 cut(s) 703, 1173
HpyCH4V TGCA 5 cut(s) 183, 445, 758, 998, 1113
HpyF3I CTNAG 5 cut(s) 99, 219, 916, 1005, 1166
HpySE526I ACGT 2 cut(s) 703, 1173
Hsp92I GRCGYC 1 cut(s) 158
Hsp92II CATG 2 cut(s) 863, 952
HspAI GCGC 3 cut(s) 80, 571, 809
Kzo9I GATC 3 cut(s) 226, 863, 910
LmnI GCTCC 4 cut(s) 174, 248, 391, 786
Lsp1109I GCAGC 8 cut(s) 53, 59, 65, 124, 221, 585, 798, 1219
LweI GCATC 1 cut(s) 432
MaeI CTAG 5 cut(s) 224, 354, 819, 855, 1182
MaeII ACGT 2 cut(s) 703, 1173
MaeIII GTNAC 1 cut(s) 261
MalI GATC 3 cut(s) 228, 865, 912
MboI GATC 3 cut(s) 226, 863, 910
MflI RGATCY 2 cut(s) 226, 863
MhlI GDGCHC 3 cut(s) 559, 802, 1167
MluCI AATT 7 cut(s) 308, 316, 785, 846, 850, 1028, 1219
MlyI GAGTC 1 cut(s) 1157
MmeI TCCRAC 2 cut(s) 152, 504
MnlI CCTC 6 cut(s) 324, 538, 541, 593, 687, 868
Mph1103I ATGCAT 1 cut(s) 447
MseI TTAA 6 cut(s) 288, 588, 849, 1023, 1217, 1270
MslI CAYNNNNRTG 1 cut(s) 702
MspA1I CMGCKG 3 cut(s) 44, 50, 248
MspI CCGG 3 cut(s) 15, 22, 77
MspR9I CCNGG 2 cut(s) 77, 508
MvaI CCWGG 1 cut(s) 508
MvnI CGCG 1 cut(s) 571
NciI CCSGG 1 cut(s) 77
NcoI CCATGG 1 cut(s) 859
NdeII GATC 3 cut(s) 226, 863, 910
NlaIII CATG 2 cut(s) 863, 952
NlaIV GGNNCC 2 cut(s) 244, 782
NmeAIII GCCGAG 1 cut(s) 219
NmuCI GTSAC 1 cut(s) 261
NsiI ATGCAT 1 cut(s) 447
PfeI GAWTC 1 cut(s) 531
PleI GAGTC 1 cut(s) 1156
PpsI GAGTC 1 cut(s) 1156
PshAI GACNNNNGTC 1 cut(s) 1182
PshBI ATTAAT 1 cut(s) 849
Psp1406I AACGTT 1 cut(s) 1173
Psp6I CCWGG 1 cut(s) 506
PspFI CCCAGC 1 cut(s) 37
PspGI CCWGG 1 cut(s) 506
PspN4I GGNNCC 2 cut(s) 244, 782
PsuI RGATCY 2 cut(s) 226, 863
RsaI GTAC 7 cut(s) 352, 358, 468, 597, 672, 795, 959
RsaNI GTAC 7 cut(s) 351, 357, 467, 596, 671, 794, 958
RseI CAYNNNNRTG 1 cut(s) 702
SalI GTCGAC 1 cut(s) 203
SaqAI TTAA 6 cut(s) 288, 588, 849, 1023, 1217, 1270
Sau3AI GATC 3 cut(s) 226, 863, 910
ScaI AGTACT 1 cut(s) 959
SchI GAGTC 1 cut(s) 1157
ScrFI CCNGG 2 cut(s) 77, 508
SduI GDGCHC 3 cut(s) 559, 802, 1167
SfaNI GCATC 1 cut(s) 432
SgrDI CGTCGACG 1 cut(s) 203
SmiMI CAYNNNNRTG 1 cut(s) 702
SpeI ACTAGT 3 cut(s) 353, 818, 1181
Sse9I AATT 7 cut(s) 308, 316, 785, 846, 850, 1028, 1219
SsiI CCGC 7 cut(s) 44, 50, 134, 161, 230, 246, 814
SspMI CTAG 5 cut(s) 224, 354, 819, 855, 1182
StyD4I CCNGG 2 cut(s) 75, 506
StyI CCWWGG 1 cut(s) 859
TaaI ACNGT 3 cut(s) 670, 899, 1158
TaiI ACGT 2 cut(s) 706, 1176
TaqI TCGA 1 cut(s) 204
TasI AATT 7 cut(s) 308, 316, 785, 846, 850, 1028, 1219
TatI WGTACW 5 cut(s) 350, 356, 595, 670, 957
TauI GCSGC 4 cut(s) 47, 53, 137, 163
TfiI GAWTC 1 cut(s) 531
Tru1I TTAA 6 cut(s) 288, 588, 849, 1023, 1217, 1270
Tru9I TTAA 6 cut(s) 288, 588, 849, 1023, 1217, 1270
TscAI CASTG 4 cut(s) 619, 666, 1163, 1257
TseFI GTSAC 1 cut(s) 261
TseI GCWGC 8 cut(s) 41, 47, 53, 137, 209, 573, 811, 1232
Tsp45I GTSAC 1 cut(s) 261
TspDTI ATGAA 4 cut(s) 908, 965, 1041, 1242
TspGWI ACGGA 3 cut(s) 161, 201, 1065
TspRI CASTG 4 cut(s) 619, 666, 1163, 1257
VspI ATTAAT 1 cut(s) 849
XapI RAATTY 2 cut(s) 308, 1219
XcmI CCANNNNNNNNNTGG 1 cut(s) 1090
XmiI GTMKAC 1 cut(s) 204
XspI CTAG 5 cut(s) 224, 354, 819, 855, 1182
ZrmI AGTACT 1 cut(s) 959
Zsp2I ATGCAT 1 cut(s) 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.