Prupe.4G003900_v2.0.a1
MYB Family

Trihelix transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0013499
Physical Location & Seq
Reverse (-)
262202 .. 264466
2265 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G003900.1

Sequence Viewer

Length: 1128 bp
ATGGAGGCGTTGACCGCCGACCGGCACATACCAAACCCAGCCGCCTTTCCAGAGCAGATAGCCCCATTCCCTGAGAGCACAGACCACCACCTTCTCTTCGCCAATCCAACGGCTCTGGTTCACTCGCCGCCCCAGAAGCTCCGTCCTATCAGGTGCAGCAGCGGCAGGTGTCCTGCAATCGAGCTCCCGGACAGCGCAGGAAACCTAGGTGATGGGGGTCCAGCACATGTCGGGTCGGGTACGTGGGGAGACGAGGGGGAGAACGAGTCCAGTTCGTCACCAGATGAAGATGGTGATGAGTATTTAAAAACAGAAGGTACAGAACGCATGAAGCGGAAGAGAAAGAGAAGATCGAGGACGGGAGGAAGGTTTGAAAGGGTTGAGATTTTTCTGGAAAGTCTGATAATGAAAGTGATGGAGAAGCAAGAGCAGATGCATAAGCAGTTGATAGAAATGATAGAAAAGAGGGAGAAAGAAAGAATAGCAAGAGAAGAAGCCTGGAAGCAGCAGGAGTTAGACAGAATGAAAAGGGATGAGGAGATAAGAGCCCAAGAGACATCTCGTAGCCTTACACTCATTTCCTTTATCCAGAATTTTTTGGGCCATGAAATTCAAGTCCCCAAACCAGCACCAGCACCAGCACCAATATCAGTAGTACCTAATTATGATCATCGATGCATGGACGAAAATGGGGTTGCAGACAATGGCATTCAGAGAGACATGATGGTGATGATCAAGTGTGATCAAACTAATAGAAGATGGCCAGAAGCTGAAGTGCAATCCCTGATAACGCTGCGGGCTGCTTTGGAACACAAGTTTCGCATTGCGGGTAATTCCAAAGGACCCATATGGGAGGAGATATCTCTTGGTATGTGTGATATGGGCTACAACCGCTCAGCAAGGAAGTGTAAGGAGAAATGGGAAAACATCAACAAGTATTTCAAGAGGTCCATGGGAACTGACAAGAAGCGTTCTGCAAATGCTAAGACTTGCCCATATTTTCAGGAATTAGAGTTGCTCCATAAAAGTGGACTTGTAAGTTCAGAGGATGGTTTTAAATGCACAAGCAACCAGAACGAGGCTAAGATTGAAAAACAGGACAACAGTGAAAAAGGAGTAACAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

376

Amino Acids

42.69

Weight (kDa)

6.42

Isoelectric Point (pI)

69.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47660
fragaria_vesca FvH4_3g00330
malus_domestica MD05G1361500.v1.1 MD10G1338800.v1.1
prunus_persica Prupe.4G003900_v2.0.a1
pyrus_communis pycom05g32800 pycom10g28850
rosa_chinensis RchiOBHm_Chr5g0000511
rosa_laevigata RLG00000030873
rosa_multiflora Rmu_co7961544.1_g000001
rosa_roxburghii Rroxscaffold_1G00075670
rosa_rugosa Rorug04G0384300
rosa_samantha Rh5AG004200 Rh5BG005700 Rh5CG004600 Rh5DG004500 Rh5DG004600
rosa_wichuraiana Rw5G000430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 156
Acc36I ACCTGC 1 cut(s) 156
AccBSI CCGCTC 1 cut(s) 894
AciI CCGC 8 cut(s) 15, 42, 128, 162, 334, 796, 827, 892
AcoI YGGCCR 1 cut(s) 761
AcsI RAATTY 2 cut(s) 592, 609
AcuI CTGAAG 1 cut(s) 792
AfaI GTAC 3 cut(s) 241, 319, 657
AfiI CCNNNNNNNGG 2 cut(s) 21, 1078
AflIII ACRYGT 1 cut(s) 226
AgsI TTSAA 4 cut(s) 374, 614, 943, 1091
AjnI CCWGG 1 cut(s) 497
AluBI AGCT 3 cut(s) 139, 184, 770
AluI AGCT 3 cut(s) 139, 184, 770
Alw21I GWGCWC 2 cut(s) 80, 186
Alw26I GTCTC 3 cut(s) 243, 548, 711
AlwNI CAGNNNCTG 1 cut(s) 770
AoxI GGCC 2 cut(s) 601, 761
ApeKI GCWGC 5 cut(s) 156, 159, 505, 793, 800
ApoI RAATTY 2 cut(s) 592, 609
AspA2I CCTAGG 1 cut(s) 205
AspLEI GCGC 1 cut(s) 197
AspS9I GGNCC 4 cut(s) 218, 601, 842, 948
AsuC2I CCSGG 1 cut(s) 188
AsuHPI GGTGA 4 cut(s) 221, 270, 305, 739
AvaII GGWCC 3 cut(s) 218, 842, 948
AvrII CCTAGG 1 cut(s) 205
BalI TGGCCA 1 cut(s) 763
BanII GRGCYC 2 cut(s) 186, 550
Bbv12I GWGCWC 2 cut(s) 80, 186
BbvI GCAGC 5 cut(s) 168, 171, 517, 780, 787
BccI CCATC 6 cut(s) 206, 284, 409, 718, 753, 1043
BceAI ACGGC 1 cut(s) 126
BciT130I CCWGG 1 cut(s) 499
BclI TGATCA 3 cut(s) 667, 732, 742
BcnI CCSGG 1 cut(s) 188
BcoDI GTCTC 3 cut(s) 243, 548, 711
BfaI CTAG 1 cut(s) 206
BfuAI ACCTGC 1 cut(s) 156
BisI GCNGC 8 cut(s) 42, 128, 157, 160, 163, 506, 794, 801
BlnI CCTAGG 1 cut(s) 205
BlpI GCTNAGC 1 cut(s) 895
BlsI GCNGC 8 cut(s) 43, 129, 158, 161, 164, 507, 795, 802
Bme1390I CCNGG 2 cut(s) 188, 499
Bme18I GGWCC 3 cut(s) 218, 842, 948
BmgT120I GGNCC 4 cut(s) 218, 601, 842, 948
BmiI GGNNCC 2 cut(s) 219, 844
BmrFI CCNGG 2 cut(s) 188, 499
BmsI GCATC 2 cut(s) 423, 665
Bpu1102I GCTNAGC 1 cut(s) 895
BpuMI CCSGG 1 cut(s) 188
Bsa29I ATCGAT 1 cut(s) 673
BsaAI YACGTR 1 cut(s) 243
BsaJI CCNNGG 2 cut(s) 205, 951
BsaXI ACNNNNNCTCC 2 cut(s) 251, 281
Bsc4I CCNNNNNNNGG 2 cut(s) 21, 1078
Bse118I RCCGGY 1 cut(s) 21
Bse1I ACTGG 1 cut(s) 270
Bse3DI GCAATG 1 cut(s) 822
BseBI CCWGG 1 cut(s) 499
BseCI ATCGAT 1 cut(s) 673
BseDI CCNNGG 2 cut(s) 205, 951
BseGI GGATG 2 cut(s) 538, 1054
BseLI CCNNNNNNNGG 2 cut(s) 21, 1078
BseMI GCAATG 1 cut(s) 822
BseMII CTCAG 2 cut(s) 63, 909
BseNI ACTGG 1 cut(s) 270
BseRI GAGGAG 2 cut(s) 551, 869
BseXI GCAGC 5 cut(s) 168, 171, 517, 780, 787
BseYI CCCAGC 1 cut(s) 37
BsgI GTGCAG 1 cut(s) 175
Bsh1285I CGRYCG 1 cut(s) 22
BshFI GGCC 2 cut(s) 603, 763
BshVI ATCGAT 1 cut(s) 673
BsiEI CGRYCG 1 cut(s) 22
BsiHKAI GWGCWC 2 cut(s) 80, 186
BsiSI CCGG 2 cut(s) 22, 188
BslFI GGGAC 1 cut(s) 602
BslI CCNNNNNNNGG 2 cut(s) 21, 1078
BsmAI GTCTC 3 cut(s) 243, 548, 711
BsmBI CGTCTC 1 cut(s) 243
BsmFI GGGAC 1 cut(s) 602
BsmI GAATGC 1 cut(s) 708
BsnI GGCC 2 cut(s) 603, 763
Bsp1286I GDGCHC 3 cut(s) 80, 186, 550
Bsp143I GATC 4 cut(s) 350, 667, 732, 742
Bsp1720I GCTNAGC 1 cut(s) 895
Bsp19I CCATGG 1 cut(s) 951
BspACI CCGC 8 cut(s) 15, 42, 128, 162, 334, 796, 827, 892
BspANI GGCC 2 cut(s) 603, 763
BspCNI CTCAG 2 cut(s) 64, 908
BspDI ATCGAT 1 cut(s) 673
BspLI GGNNCC 2 cut(s) 219, 844
BspMI ACCTGC 1 cut(s) 156
BsrBI CCGCTC 1 cut(s) 894
BsrDI GCAATG 1 cut(s) 822
BsrFI RCCGGY 1 cut(s) 21
BsrI ACTGG 1 cut(s) 270
BssAI RCCGGY 1 cut(s) 21
BssECI CCNNGG 2 cut(s) 205, 951
BssMI GATC 4 cut(s) 350, 667, 732, 742
BssT1I CCWWGG 2 cut(s) 205, 951
Bst2UI CCWGG 1 cut(s) 499
Bst4CI ACNGT 1 cut(s) 1106
Bst6I CTCTTC 2 cut(s) 101, 332
BstBAI YACGTR 1 cut(s) 243
BstC8I GCNNGC 1 cut(s) 798
BstDEI CTNAG 4 cut(s) 72, 895, 984, 1083
BstDSI CCRYGG 1 cut(s) 951
BstF5I GGATG 2 cut(s) 538, 1054
BstHHI GCGC 1 cut(s) 197
BstKTI GATC 4 cut(s) 353, 670, 735, 745
BstMAI GTCTC 3 cut(s) 243, 548, 711
BstMBI GATC 4 cut(s) 350, 667, 732, 742
BstMCI CGRYCG 1 cut(s) 22
BstMWI GCNNNNNNNGC 4 cut(s) 14, 136, 162, 891
BstNI CCWGG 1 cut(s) 499
BstNSI RCATGY 1 cut(s) 230
BstSCI CCNGG 2 cut(s) 186, 497
BstV1I GCAGC 5 cut(s) 168, 171, 517, 780, 787
BstXI CCANNNNNNTGG 1 cut(s) 1028
Bsu15I ATCGAT 1 cut(s) 673
BsuRI GGCC 2 cut(s) 603, 763
BsuTUI ATCGAT 1 cut(s) 673
BtgI CCRYGG 1 cut(s) 951
BtsCI GGATG 2 cut(s) 538, 1054
BtsIMutI CAGTG 1 cut(s) 1111
BveI ACCTGC 1 cut(s) 156
Cac8I GCNNGC 1 cut(s) 798
CaiI CAGNNNCTG 1 cut(s) 770
CfoI GCGC 1 cut(s) 197
Cfr10I RCCGGY 1 cut(s) 21
Cfr13I GGNCC 4 cut(s) 218, 601, 842, 948
ClaI ATCGAT 1 cut(s) 673
Csp6I GTAC 3 cut(s) 240, 318, 656
CviAII CATG 6 cut(s) 227, 328, 605, 679, 721, 952
CviQI GTAC 3 cut(s) 240, 318, 656
DdeI CTNAG 4 cut(s) 72, 895, 984, 1083
DpnI GATC 4 cut(s) 352, 669, 734, 744
DpnII GATC 4 cut(s) 350, 667, 732, 742
DraI TTTAAA 2 cut(s) 306, 1057
EaeI YGGCCR 1 cut(s) 761
Eam1104I CTCTTC 2 cut(s) 101, 332
EarI CTCTTC 2 cut(s) 101, 332
Ecl136II GAGCTC 1 cut(s) 184
Eco130I CCWWGG 2 cut(s) 205, 951
Eco24I GRGCYC 2 cut(s) 186, 550
Eco32I GATATC 1 cut(s) 861
Eco47I GGWCC 3 cut(s) 218, 842, 948
Eco53kI GAGCTC 1 cut(s) 184
Eco57I CTGAAG 1 cut(s) 792
EcoICRI GAGCTC 1 cut(s) 184
EcoO109I RGGNCCY 1 cut(s) 842
EcoRII CCWGG 1 cut(s) 497
EcoRV GATATC 1 cut(s) 861
EcoT14I CCWWGG 2 cut(s) 205, 951
EcoT22I ATGCAT 2 cut(s) 438, 680
EcoT38I GRGCYC 2 cut(s) 186, 550
ErhI CCWWGG 2 cut(s) 205, 951
Esp3I CGTCTC 1 cut(s) 243
FaeI CATG 6 cut(s) 230, 331, 608, 682, 724, 955
FaqI GGGAC 1 cut(s) 602
FatI CATG 6 cut(s) 226, 327, 604, 678, 720, 951
FauI CCCGC 2 cut(s) 789, 820
FauNDI CATATG 1 cut(s) 848
FbaI TGATCA 3 cut(s) 667, 732, 742
Fnu4HI GCNGC 8 cut(s) 42, 128, 157, 160, 163, 506, 794, 801
FokI GGATG 2 cut(s) 545, 1061
FriOI GRGCYC 2 cut(s) 186, 550
Fsp4HI GCNGC 8 cut(s) 42, 128, 157, 160, 163, 506, 794, 801
FspBI CTAG 1 cut(s) 206
GlaI GCGC 1 cut(s) 196
GluI GCNGC 8 cut(s) 42, 128, 157, 160, 163, 506, 794, 801
GsaI CCCAGC 1 cut(s) 41
HaeIII GGCC 2 cut(s) 603, 763
HapII CCGG 2 cut(s) 22, 188
HhaI GCGC 1 cut(s) 197
Hin1II CATG 6 cut(s) 230, 331, 608, 682, 724, 955
Hin6I GCGC 1 cut(s) 195
HinP1I GCGC 1 cut(s) 195
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HinfI GANTC 1 cut(s) 266
HpaII CCGG 2 cut(s) 22, 188
HphI GGTGA 4 cut(s) 221, 270, 305, 739
Hpy166II GTNNAC 3 cut(s) 12, 121, 1031
Hpy188I TCNGA 3 cut(s) 402, 714, 1045
Hpy188III TCNNGA 5 cut(s) 50, 392, 589, 943, 1004
Hpy8I GTNNAC 3 cut(s) 12, 121, 1031
HpyAV CCTTC 3 cut(s) 101, 308, 360
HpyCH4III ACNGT 1 cut(s) 1106
HpyCH4IV ACGT 1 cut(s) 242
HpyCH4V TGCA 8 cut(s) 156, 176, 436, 678, 698, 778, 977, 1062
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 136, 162, 891
HpyF3I CTNAG 4 cut(s) 72, 895, 984, 1083
HpySE526I ACGT 1 cut(s) 242
Hsp92II CATG 6 cut(s) 230, 331, 608, 682, 724, 955
HspAI GCGC 1 cut(s) 195
Ksp22I TGATCA 3 cut(s) 667, 732, 742
Kzo9I GATC 4 cut(s) 350, 667, 732, 742
LmnI GCTCC 3 cut(s) 144, 189, 1023
Lsp1109I GCAGC 5 cut(s) 168, 171, 517, 780, 787
LweI GCATC 2 cut(s) 423, 665
MaeI CTAG 1 cut(s) 206
MaeII ACGT 1 cut(s) 242
MaeIII GTNAC 2 cut(s) 276, 1117
MalI GATC 4 cut(s) 352, 669, 734, 744
MbiI CCGCTC 1 cut(s) 894
MboI GATC 4 cut(s) 350, 667, 732, 742
MboII GAAGA 6 cut(s) 88, 299, 349, 360, 503, 768
MhlI GDGCHC 3 cut(s) 80, 186, 550
MlsI TGGCCA 1 cut(s) 763
MluCI AATT 5 cut(s) 592, 609, 661, 832, 1007
MluNI TGGCCA 1 cut(s) 763
MlyI GAGTC 1 cut(s) 275
MmeI TCCRAC 1 cut(s) 131
MnlI CCTC 9 cut(s) 247, 348, 356, 459, 529, 847, 939, 1039, 1072
Mox20I TGGCCA 1 cut(s) 763
Mph1103I ATGCAT 2 cut(s) 438, 680
MscI TGGCCA 1 cut(s) 763
MseI TTAA 2 cut(s) 305, 1056
MslI CAYNNNNRTG 2 cut(s) 725, 1026
Msp20I TGGCCA 1 cut(s) 763
MspA1I CMGCKG 1 cut(s) 162
MspI CCGG 2 cut(s) 22, 188
MspR9I CCNGG 2 cut(s) 188, 499
Mva1269I GAATGC 1 cut(s) 708
MvaI CCWGG 1 cut(s) 499
MwoI GCNNNNNNNGC 4 cut(s) 14, 136, 162, 891
NciI CCSGG 1 cut(s) 188
NcoI CCATGG 1 cut(s) 951
NdeI CATATG 1 cut(s) 848
NdeII GATC 4 cut(s) 350, 667, 732, 742
NlaIII CATG 6 cut(s) 230, 331, 608, 682, 724, 955
NlaIV GGNNCC 2 cut(s) 219, 844
NmuCI GTSAC 1 cut(s) 276
NsiI ATGCAT 2 cut(s) 438, 680
NspI RCATGY 1 cut(s) 230
PaqCI CACCTGC 1 cut(s) 156
PciI ACATGT 1 cut(s) 226
PctI GAATGC 1 cut(s) 708
PfoI TCCNGGA 1 cut(s) 186
PkrI GCNGC 8 cut(s) 43, 129, 158, 161, 164, 507, 795, 802
PleI GAGTC 1 cut(s) 274
PpsI GAGTC 1 cut(s) 274
Ppu21I YACGTR 1 cut(s) 243
PpuMI RGGWCCY 1 cut(s) 842
PscI ACATGT 1 cut(s) 226
Psp124BI GAGCTC 1 cut(s) 186
Psp5II RGGWCCY 1 cut(s) 842
Psp6I CCWGG 1 cut(s) 497
PspFI CCCAGC 1 cut(s) 37
PspGI CCWGG 1 cut(s) 497
PspN4I GGNNCC 2 cut(s) 219, 844
PspPI GGNCC 4 cut(s) 218, 601, 842, 948
PspPPI RGGWCCY 1 cut(s) 842
PstNI CAGNNNCTG 1 cut(s) 770
RsaI GTAC 3 cut(s) 241, 319, 657
RsaNI GTAC 3 cut(s) 240, 318, 656
RseI CAYNNNNRTG 2 cut(s) 725, 1026
SacI GAGCTC 1 cut(s) 186
SaqAI TTAA 2 cut(s) 305, 1056
SatI GCNGC 8 cut(s) 42, 128, 157, 160, 163, 506, 794, 801
Sau3AI GATC 4 cut(s) 350, 667, 732, 742
Sau96I GGNCC 4 cut(s) 218, 601, 842, 948
SchI GAGTC 1 cut(s) 275
ScrFI CCNGG 2 cut(s) 188, 499
SduI GDGCHC 3 cut(s) 80, 186, 550
SfaNI GCATC 2 cut(s) 423, 665
SinI GGWCC 3 cut(s) 218, 842, 948
SmiMI CAYNNNNRTG 2 cut(s) 725, 1026
Sse9I AATT 5 cut(s) 592, 609, 661, 832, 1007
SsiI CCGC 8 cut(s) 15, 42, 128, 162, 334, 796, 827, 892
SspMI CTAG 1 cut(s) 206
SstI GAGCTC 1 cut(s) 186
StyD4I CCNGG 2 cut(s) 186, 497
StyI CCWWGG 2 cut(s) 205, 951
TaaI ACNGT 1 cut(s) 1106
TaiI ACGT 1 cut(s) 245
TaqI TCGA 3 cut(s) 180, 353, 673
TasI AATT 5 cut(s) 592, 609, 661, 832, 1007
TauI GCSGC 3 cut(s) 44, 130, 165
Tru1I TTAA 2 cut(s) 305, 1056
Tru9I TTAA 2 cut(s) 305, 1056
TscAI CASTG 1 cut(s) 1111
TseFI GTSAC 1 cut(s) 276
TseI GCWGC 5 cut(s) 156, 159, 505, 793, 800
Tsp45I GTSAC 1 cut(s) 276
TspDTI ATGAA 5 cut(s) 300, 344, 422, 539, 621
TspGWI ACGGA 1 cut(s) 131
TspRI CASTG 1 cut(s) 1111
VpaK11BI GGWCC 3 cut(s) 218, 842, 948
XapI RAATTY 2 cut(s) 592, 609
XceI RCATGY 1 cut(s) 230
XmaJI CCTAGG 1 cut(s) 205
XspI CTAG 1 cut(s) 206
Zsp2I ATGCAT 2 cut(s) 438, 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.