Rh5DG004500
MYB Family

Trihelix transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0013499
Physical Location & Seq
Reverse (-)
322187 .. 323071
885 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG004500.1

Sequence Viewer

Length: 885 bp
ATGCTCGAGCATTTTCTGGAAAGTCTGGTAAACAAAATGATGGAGAAGCAAGAGCAGATGCATAAGCAGTTGATAGAGATGGTACAAGACAGGGAGAAAGAGAGAATAGCCAAAGAAGAAACCTGGAAACAGCACGAGTTGGAGAGAATCACAAGGGATGAGGAGGTAAGAGCCCAAGAGACATCGCGCAGCCTTGCCCTCATTAACTTTGTACAGAGTTTGTTGGGCAGTGATGTTCAAGTTCCCCAACCAGCACCACCCGTAGCACAACCAGTGGCAACAGAACAACCTCCTACTTCCAATCAATATCATCAATGTGTGAAAGAAAATAAAAATCTTCACAAAGACACAGCGATTGCCAAGTGTATCGCAACACCAACTGATAGAAGATGGCTCCAATTTGAAATACGGGCACTCATAGCGCTGCGGACTAGTTTGGAACATAAGTTTCGCACCCCAATTAATTCTAGCCATGGATCTCTATGGGAGGAGATAGCTCTTGGGATGAACCGTATGGGCTTTGATCGCTCAGGAAGGAAGTGTAAAGAAAAATGGGAAAACATGAACAAGTACTTCAAAAGGGCAATCACAAATGACAAGAGGCGTCCTGCAAATGCTAAGACTTGTCAGTATTTTAATGAATTGGAGTTGCTCTACAAAAACGGACTTCTAAATCTGGGGAATGGCTTTAGTCCCACAAGCAGTCTCGGGAATGGCTTTAGTTGCACAAGCAACCAGAAGGAGACCAAGAGTGAAAACGAGTCCCAACAGTGCGTGCTCAGCAACGTTGACACTAGTCTTCTAACTTGTGCCACAATACCATCGGTGTTAAATTCAAATGAAGCTGCTGAAAGAACGAGAGCAGTGGTTTCTCCTGCTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

294

Amino Acids

33.59

Weight (kDa)

8.41

Isoelectric Point (pI)

55.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 129 - 217 3.1e-20 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47660
fragaria_vesca FvH4_3g00330
malus_domestica MD05G1361500.v1.1 MD10G1338800.v1.1
prunus_persica Prupe.4G003900_v2.0.a1
pyrus_communis pycom05g32800 pycom10g28850
rosa_chinensis RchiOBHm_Chr5g0000511
rosa_laevigata RLG00000030873
rosa_multiflora Rmu_co7961544.1_g000001
rosa_roxburghii Rroxscaffold_1G00075670
rosa_rugosa Rorug04G0384300
rosa_samantha Rh5AG004200 Rh5BG005700 Rh5CG004600 Rh5DG004500 Rh5DG004600
rosa_wichuraiana Rw5G000430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 187
AciI CCGC 1 cut(s) 427
AclI AACGTT 1 cut(s) 786
AclWI GGATC 1 cut(s) 484
AcsI RAATTY 1 cut(s) 832
AcyI GRCGYC 1 cut(s) 604
AfaI GTAC 3 cut(s) 84, 213, 572
AfeI AGCGCT 1 cut(s) 423
AgsI TTSAA 4 cut(s) 239, 404, 577, 837
AhlI ACTAGT 2 cut(s) 431, 794
AjnI CCWGG 1 cut(s) 122
AluBI AGCT 2 cut(s) 497, 845
AluI AGCT 2 cut(s) 497, 845
Alw21I GWGCWC 1 cut(s) 780
Alw26I GTCTC 3 cut(s) 173, 710, 737
AlwI GGATC 1 cut(s) 484
Ama87I CYCGRG 2 cut(s) 5, 707
Aor51HI AGCGCT 1 cut(s) 423
ApeKI GCWGC 3 cut(s) 189, 424, 845
ApoI RAATTY 1 cut(s) 832
AseI ATTAAT 1 cut(s) 462
AspLEI GCGC 2 cut(s) 189, 424
AvaI CYCGRG 2 cut(s) 5, 707
BaeGI GKGCMC 1 cut(s) 415
BanII GRGCYC 1 cut(s) 175
BauI CACGAG 1 cut(s) 134
BbsI GAAGAC 1 cut(s) 791
Bbv12I GWGCWC 1 cut(s) 780
BbvI GCAGC 3 cut(s) 201, 411, 832
BccI CCATC 4 cut(s) 34, 73, 384, 829
BciT130I CCWGG 1 cut(s) 124
BcoDI GTCTC 3 cut(s) 173, 710, 737
BcuI ACTAGT 2 cut(s) 431, 794
BfaI CTAG 3 cut(s) 432, 468, 795
BfoI RGCGCY 1 cut(s) 425
BisI GCNGC 3 cut(s) 190, 425, 846
BlpI GCTNAGC 1 cut(s) 779
BlsI GCNGC 3 cut(s) 191, 426, 847
BmcAI AGTACT 1 cut(s) 572
Bme1390I CCNGG 1 cut(s) 124
BmeT110I CYCGRG 2 cut(s) 5, 707
BmiI GGNNCC 1 cut(s) 395
BmrFI CCNGG 1 cut(s) 124
BmsI GCATC 1 cut(s) 48
BoxI GACNNNNGTC 1 cut(s) 795
BpiI GAAGAC 1 cut(s) 791
Bpu10I CCTNAGC 1 cut(s) 529
Bpu1102I GCTNAGC 1 cut(s) 779
BsaHI GRCGYC 1 cut(s) 604
BsaI GGTCTC 1 cut(s) 737
BsaJI CCNNGG 1 cut(s) 472
Bse1I ACTGG 1 cut(s) 272
BseBI CCWGG 1 cut(s) 124
BseDI CCNNGG 1 cut(s) 472
BseGI GGATG 2 cut(s) 163, 510
BseMII CTCAG 2 cut(s) 543, 793
BseNI ACTGG 1 cut(s) 272
BseRI GAGGAG 2 cut(s) 176, 503
BseSI GKGCMC 1 cut(s) 415
BseXI GCAGC 3 cut(s) 201, 411, 832
Bsh1236I CGCG 1 cut(s) 187
BsiHKAI GWGCWC 1 cut(s) 780
BsiHKCI CYCGRG 2 cut(s) 5, 707
BslFI GGGAC 2 cut(s) 678, 748
BsmAI GTCTC 3 cut(s) 173, 710, 737
BsmFI GGGAC 2 cut(s) 678, 748
Bso31I GGTCTC 1 cut(s) 737
BsoBI CYCGRG 2 cut(s) 5, 707
Bsp1286I GDGCHC 3 cut(s) 175, 415, 780
Bsp1407I TGTACA 1 cut(s) 211
Bsp143I GATC 2 cut(s) 476, 523
Bsp1720I GCTNAGC 1 cut(s) 779
Bsp19I CCATGG 1 cut(s) 472
BspACI CCGC 1 cut(s) 427
BspCNI CTCAG 2 cut(s) 542, 792
BspFNI CGCG 1 cut(s) 187
BspLI GGNNCC 1 cut(s) 395
BspPI GGATC 1 cut(s) 484
BspTNI GGTCTC 1 cut(s) 737
BsrGI TGTACA 1 cut(s) 211
BsrI ACTGG 1 cut(s) 272
BssECI CCNNGG 1 cut(s) 472
BssMI GATC 2 cut(s) 476, 523
BssNI GRCGYC 1 cut(s) 604
BssSI CACGAG 1 cut(s) 134
BssT1I CCWWGG 1 cut(s) 472
Bst2BI CACGAG 1 cut(s) 134
Bst2UI CCWGG 1 cut(s) 124
Bst4CI ACNGT 2 cut(s) 512, 771
BstACI GRCGYC 1 cut(s) 604
BstAUI TGTACA 1 cut(s) 211
BstC8I GCNNGC 1 cut(s) 776
BstDEI CTNAG 3 cut(s) 529, 618, 779
BstDSI CCRYGG 1 cut(s) 472
BstF5I GGATG 2 cut(s) 163, 510
BstFNI CGCG 1 cut(s) 187
BstH2I RGCGCY 1 cut(s) 425
BstHHI GCGC 2 cut(s) 189, 424
BstKTI GATC 2 cut(s) 479, 526
BstMAI GTCTC 3 cut(s) 173, 710, 737
BstMBI GATC 2 cut(s) 476, 523
BstMWI GCNNNNNNNGC 4 cut(s) 419, 525, 723, 780
BstNI CCWGG 1 cut(s) 124
BstPAI GACNNNNGTC 1 cut(s) 795
BstSCI CCNGG 1 cut(s) 122
BstSLI GKGCMC 1 cut(s) 415
BstUI CGCG 1 cut(s) 187
BstV1I GCAGC 3 cut(s) 201, 411, 832
BstV2I GAAGAC 1 cut(s) 791
BstX2I RGATCY 1 cut(s) 476
BstYI RGATCY 1 cut(s) 476
BtgI CCRYGG 1 cut(s) 472
BtgZI GCGATG 1 cut(s) 168
BtsCI GGATG 2 cut(s) 163, 510
BtsI GCAGTG 2 cut(s) 235, 870
BtsIMutI CAGTG 4 cut(s) 235, 279, 776, 870
Cac8I GCNNGC 1 cut(s) 776
CfoI GCGC 2 cut(s) 189, 424
CseI GACGC 1 cut(s) 593
Csp6I GTAC 3 cut(s) 83, 212, 571
CviAII CATG 2 cut(s) 473, 562
CviQI GTAC 3 cut(s) 83, 212, 571
DdeI CTNAG 3 cut(s) 529, 618, 779
DpnI GATC 2 cut(s) 478, 525
DpnII GATC 2 cut(s) 476, 523
Eco130I CCWWGG 1 cut(s) 472
Eco24I GRGCYC 1 cut(s) 175
Eco31I GGTCTC 1 cut(s) 737
Eco47III AGCGCT 1 cut(s) 423
Eco88I CYCGRG 2 cut(s) 5, 707
EcoRII CCWGG 1 cut(s) 122
EcoT14I CCWWGG 1 cut(s) 472
EcoT22I ATGCAT 1 cut(s) 63
EcoT38I GRGCYC 1 cut(s) 175
ErhI CCWWGG 1 cut(s) 472
FaeI CATG 2 cut(s) 476, 565
FaiI YATR 7 cut(s) 63, 419, 444, 474, 484, 515, 563
FaqI GGGAC 2 cut(s) 678, 748
FatI CATG 2 cut(s) 472, 561
Fnu4HI GCNGC 3 cut(s) 190, 425, 846
FokI GGATG 2 cut(s) 170, 517
FriOI GRGCYC 1 cut(s) 175
Fsp4HI GCNGC 3 cut(s) 190, 425, 846
FspBI CTAG 3 cut(s) 432, 468, 795
GlaI GCGC 2 cut(s) 188, 423
GluI GCNGC 3 cut(s) 190, 425, 846
HaeII RGCGCY 1 cut(s) 425
HgaI GACGC 1 cut(s) 593
HhaI GCGC 2 cut(s) 189, 424
Hin1I GRCGYC 1 cut(s) 604
Hin1II CATG 2 cut(s) 476, 565
Hin6I GCGC 2 cut(s) 187, 422
HinP1I GCGC 2 cut(s) 187, 422
HincII GTYRAC 1 cut(s) 790
HindII GTYRAC 1 cut(s) 790
HinfI GANTC 2 cut(s) 147, 761
Hpy166II GTNNAC 2 cut(s) 31, 790
Hpy188III TCNNGA 3 cut(s) 17, 531, 709
Hpy8I GTNNAC 2 cut(s) 31, 790
HpyAV CCTTC 2 cut(s) 528, 733
HpyCH4III ACNGT 2 cut(s) 512, 771
HpyCH4IV ACGT 1 cut(s) 786
HpyCH4V TGCA 3 cut(s) 61, 611, 726
HpyF10VI GCNNNNNNNGC 4 cut(s) 419, 525, 723, 780
HpyF3I CTNAG 3 cut(s) 529, 618, 779
HpySE526I ACGT 1 cut(s) 786
Hsp92I GRCGYC 1 cut(s) 604
Hsp92II CATG 2 cut(s) 476, 565
HspAI GCGC 2 cut(s) 187, 422
Kzo9I GATC 2 cut(s) 476, 523
LmnI GCTCC 1 cut(s) 399
Lsp1109I GCAGC 3 cut(s) 201, 411, 832
LweI GCATC 1 cut(s) 48
MaeI CTAG 3 cut(s) 432, 468, 795
MaeII ACGT 1 cut(s) 786
MalI GATC 2 cut(s) 478, 525
MboI GATC 2 cut(s) 476, 523
MboII GAAGA 4 cut(s) 128, 329, 399, 791
MflI RGATCY 1 cut(s) 476
MhlI GDGCHC 3 cut(s) 175, 415, 780
MluCI AATT 5 cut(s) 398, 459, 463, 641, 832
MlyI GAGTC 1 cut(s) 770
MmeI TCCRAC 1 cut(s) 120
MnlI CCTC 6 cut(s) 154, 157, 209, 300, 481, 594
Mph1103I ATGCAT 1 cut(s) 63
MseI TTAA 5 cut(s) 204, 462, 636, 830, 883
MslI CAYNNNNRTG 1 cut(s) 315
MspR9I CCNGG 1 cut(s) 124
MvaI CCWGG 1 cut(s) 124
MvnI CGCG 1 cut(s) 187
MwoI GCNNNNNNNGC 4 cut(s) 419, 525, 723, 780
NcoI CCATGG 1 cut(s) 472
NdeII GATC 2 cut(s) 476, 523
NlaIII CATG 2 cut(s) 476, 565
NlaIV GGNNCC 1 cut(s) 395
NsiI ATGCAT 1 cut(s) 63
PaeR7I CTCGAG 1 cut(s) 5
PfeI GAWTC 1 cut(s) 147
PkrI GCNGC 3 cut(s) 191, 426, 847
PleI GAGTC 1 cut(s) 769
PpsI GAGTC 1 cut(s) 769
PshAI GACNNNNGTC 1 cut(s) 795
PshBI ATTAAT 1 cut(s) 462
Psp1406I AACGTT 1 cut(s) 786
Psp6I CCWGG 1 cut(s) 122
PspGI CCWGG 1 cut(s) 122
PspN4I GGNNCC 1 cut(s) 395
PspXI VCTCGAGB 1 cut(s) 5
PsuI RGATCY 1 cut(s) 476
RsaI GTAC 3 cut(s) 84, 213, 572
RsaNI GTAC 3 cut(s) 83, 212, 571
RseI CAYNNNNRTG 1 cut(s) 315
SaqAI TTAA 5 cut(s) 204, 462, 636, 830, 883
SatI GCNGC 3 cut(s) 190, 425, 846
Sau3AI GATC 2 cut(s) 476, 523
ScaI AGTACT 1 cut(s) 572
SchI GAGTC 1 cut(s) 770
ScrFI CCNGG 1 cut(s) 124
SduI GDGCHC 3 cut(s) 175, 415, 780
SetI ASST 6 cut(s) 125, 168, 292, 499, 789, 847
SfaNI GCATC 1 cut(s) 48
Sfr274I CTCGAG 1 cut(s) 5
SlaI CTCGAG 1 cut(s) 5
SmiMI CAYNNNNRTG 1 cut(s) 315
SmlI CTYRAG 1 cut(s) 5
SmoI CTYRAG 1 cut(s) 5
SpeI ACTAGT 2 cut(s) 431, 794
Sse9I AATT 5 cut(s) 398, 459, 463, 641, 832
SsiI CCGC 1 cut(s) 427
SspMI CTAG 3 cut(s) 432, 468, 795
StyD4I CCNGG 1 cut(s) 122
StyI CCWWGG 1 cut(s) 472
TaaI ACNGT 2 cut(s) 512, 771
TaiI ACGT 1 cut(s) 789
TaqI TCGA 1 cut(s) 6
TasI AATT 5 cut(s) 398, 459, 463, 641, 832
TatI WGTACW 2 cut(s) 211, 570
TfiI GAWTC 1 cut(s) 147
Tru1I TTAA 5 cut(s) 204, 462, 636, 830, 883
Tru9I TTAA 5 cut(s) 204, 462, 636, 830, 883
TscAI CASTG 4 cut(s) 235, 279, 776, 870
TseI GCWGC 3 cut(s) 189, 424, 845
TspDTI ATGAA 4 cut(s) 521, 578, 654, 855
TspGWI ACGGA 1 cut(s) 678
TspRI CASTG 4 cut(s) 235, 279, 776, 870
VspI ATTAAT 1 cut(s) 462
XapI RAATTY 1 cut(s) 832
XhoI CTCGAG 1 cut(s) 5
XspI CTAG 3 cut(s) 432, 468, 795
ZrmI AGTACT 1 cut(s) 572
Zsp2I ATGCAT 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.