pycom10g28850
MYB Family

Trihelix transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0013499
Physical Location & Seq
Forward (+)
29334672 .. 29335394
723 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g28850.1

Sequence Viewer

Length: 723 bp
ATGGAGCAGCAAGAGCAGATGCATAAGCAGTTAATAGAGATGGTAGAAAAGGAGGAGGAAGAGAGATTAGCAAGAGAAGAAGCCTGGAAGCAGCAGGAGTTAGACAGACTGAAAAGGGATAAGGAGATAAGAGCCCAAGAGATATCTCGCAACCTTGCGCTCATTTCCTTTATCCAGAATTATTTGGCCTATGAAATTCAAGTCCCCCAACCATCAGCAGCAACAGCACCCGAACGAGCACCAGCACCAACAGCAGCACCAATACCAATATCGGTAGTACCTAAATATGATCACCAACGCGTGGAAGGAAATGGGAAGGCAGACAATGGCATGCAGAGAGACCTGATGTTGGTGAGCCATAGTGATGCAACGGATAGAAGATGGCCAGAAGCTGAAGTACAGGCCCTCATAACGCAGCGGGCTGCTTTCAAACACAAGTTTCGCGTTGCAGGTACTCCAAAGGGACGCATATGGGAGGAGATATCTGTTAAGATGCATGAAATGGGCTACGTCCGGTCAGGAAGGAAGTGCAGGGAGAAATGGGAAAACATCAACAAGTATTTCAGAAGGTGCATGGGATCAGACAATAAGCGCCCTGCAAATGCCAAGCTTTGTCCATATTTTCATGAATTGGAGTTGCTCCATAAAAGCGCACTTGTAAGTTTCGGGAATGGCTTTAACCGCACAAGCAACCAGAACGAGGCCAATATTGAAAAACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

241

Amino Acids

27.9

Weight (kDa)

8.88

Isoelectric Point (pI)

65.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 126 - 213 4.7e-21 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47660
fragaria_vesca FvH4_3g00330
malus_domestica MD05G1361500.v1.1 MD10G1338800.v1.1
prunus_persica Prupe.4G003900_v2.0.a1
pyrus_communis pycom05g32800 pycom10g28850
rosa_chinensis RchiOBHm_Chr5g0000511
rosa_laevigata RLG00000030873
rosa_multiflora Rmu_co7961544.1_g000001
rosa_roxburghii Rroxscaffold_1G00075670
rosa_rugosa Rorug04G0384300
rosa_samantha Rh5AG004200 Rh5BG005700 Rh5CG004600 Rh5DG004500 Rh5DG004600
rosa_wichuraiana Rw5G000430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 440
AccB7I CCANNNNNTGG 1 cut(s) 301
AccII CGCG 2 cut(s) 300, 444
AciI CCGC 2 cut(s) 418, 682
AclWI GGATC 1 cut(s) 586
AcoI YGGCCR 1 cut(s) 383
AcsI RAATTY 1 cut(s) 195
AcuI CTGAAG 1 cut(s) 414
AfaI GTAC 3 cut(s) 279, 399, 454
AfiI CCNNNNNNNGG 3 cut(s) 301, 349, 700
AflIII ACRYGT 1 cut(s) 298
AgsI TTSAA 3 cut(s) 200, 430, 713
AjnI CCWGG 1 cut(s) 83
AluBI AGCT 2 cut(s) 392, 610
AluI AGCT 2 cut(s) 392, 610
Alw21I GWGCWC 1 cut(s) 241
Alw26I GTCTC 1 cut(s) 333
AlwI GGATC 1 cut(s) 586
AlwNI CAGNNNCTG 1 cut(s) 392
AoxI GGCC 4 cut(s) 186, 383, 402, 702
ApeKI GCWGC 6 cut(s) 7, 91, 218, 254, 415, 422
ApoI RAATTY 1 cut(s) 195
AspLEI GCGC 3 cut(s) 160, 594, 653
AspS9I GGNCC 1 cut(s) 403
AsuHPI GGTGA 2 cut(s) 284, 364
BalI TGGCCA 1 cut(s) 385
BanII GRGCYC 1 cut(s) 136
BarI GAAGNNNNNNTAC 2 cut(s) 381, 413
Bbv12I GWGCWC 1 cut(s) 241
BbvI GCAGC 6 cut(s) 19, 103, 230, 266, 409, 427
BccI CCATC 3 cut(s) 34, 220, 375
BciT130I CCWGG 1 cut(s) 85
BclI TGATCA 1 cut(s) 289
BcoDI GTCTC 1 cut(s) 333
BfoI RGCGCY 1 cut(s) 595
BfuAI ACCTGC 1 cut(s) 440
BisI GCNGC 6 cut(s) 8, 92, 219, 255, 416, 423
BlsI GCNGC 6 cut(s) 9, 93, 220, 256, 417, 424
Bme1390I CCNGG 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 403
BmrFI CCNGG 1 cut(s) 85
BmsI GCATC 3 cut(s) 9, 355, 483
BsaI GGTCTC 1 cut(s) 333
BsaWI WCCGGW 1 cut(s) 513
Bsc4I CCNNNNNNNGG 3 cut(s) 301, 349, 700
BseBI CCWGG 1 cut(s) 85
BseLI CCNNNNNNNGG 3 cut(s) 301, 349, 700
BseRI GAGGAG 2 cut(s) 68, 491
BseXI GCAGC 6 cut(s) 19, 103, 230, 266, 409, 427
BsgI GTGCAG 1 cut(s) 550
Bsh1236I CGCG 2 cut(s) 300, 444
BshFI GGCC 4 cut(s) 188, 385, 404, 704
BsiHKAI GWGCWC 1 cut(s) 241
BsiSI CCGG 1 cut(s) 514
BslFI GGGAC 2 cut(s) 188, 477
BslI CCNNNNNNNGG 3 cut(s) 301, 349, 700
BsmAI GTCTC 1 cut(s) 333
BsmFI GGGAC 2 cut(s) 188, 477
BsnI GGCC 4 cut(s) 188, 385, 404, 704
Bso31I GGTCTC 1 cut(s) 333
Bsp1286I GDGCHC 2 cut(s) 136, 241
Bsp143I GATC 2 cut(s) 289, 578
BspACI CCGC 2 cut(s) 418, 682
BspANI GGCC 4 cut(s) 188, 385, 404, 704
BspFNI CGCG 2 cut(s) 300, 444
BspHI TCATGA 1 cut(s) 625
BspMI ACCTGC 1 cut(s) 440
BspPI GGATC 1 cut(s) 586
BspTNI GGTCTC 1 cut(s) 333
BssMI GATC 2 cut(s) 289, 578
Bst2UI CCWGG 1 cut(s) 85
Bst4CI ACNGT 1 cut(s) 720
Bst6I CTCTTC 1 cut(s) 54
BstC8I GCNNGC 2 cut(s) 332, 420
BstFNI CGCG 2 cut(s) 300, 444
BstH2I RGCGCY 1 cut(s) 595
BstHHI GCGC 3 cut(s) 160, 594, 653
BstKTI GATC 2 cut(s) 292, 581
BstMAI GTCTC 1 cut(s) 333
BstMBI GATC 2 cut(s) 289, 578
BstMWI GCNNNNNNNGC 4 cut(s) 13, 224, 251, 681
BstNI CCWGG 1 cut(s) 85
BstNSI RCATGY 1 cut(s) 334
BstSCI CCNGG 1 cut(s) 83
BstUI CGCG 2 cut(s) 300, 444
BstV1I GCAGC 6 cut(s) 19, 103, 230, 266, 409, 427
BsuRI GGCC 4 cut(s) 188, 385, 404, 704
BveI ACCTGC 1 cut(s) 440
Cac8I GCNNGC 2 cut(s) 332, 420
CaiI CAGNNNCTG 1 cut(s) 392
CciI TCATGA 1 cut(s) 625
CfoI GCGC 3 cut(s) 160, 594, 653
Cfr13I GGNCC 1 cut(s) 403
CseI GACGC 1 cut(s) 474
Csp6I GTAC 3 cut(s) 278, 398, 453
CviAII CATG 4 cut(s) 331, 497, 574, 626
CviQI GTAC 3 cut(s) 278, 398, 453
DpnI GATC 2 cut(s) 291, 580
DpnII GATC 2 cut(s) 289, 578
EaeI YGGCCR 1 cut(s) 383
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Eco24I GRGCYC 1 cut(s) 136
Eco31I GGTCTC 1 cut(s) 333
Eco32I GATATC 2 cut(s) 144, 483
Eco57I CTGAAG 1 cut(s) 414
EcoO109I RGGNCCY 1 cut(s) 403
EcoRII CCWGG 1 cut(s) 83
EcoRV GATATC 2 cut(s) 144, 483
EcoT22I ATGCAT 2 cut(s) 24, 498
EcoT38I GRGCYC 1 cut(s) 136
FaeI CATG 4 cut(s) 334, 500, 577, 629
FaqI GGGAC 2 cut(s) 188, 477
FatI CATG 4 cut(s) 330, 496, 573, 625
FauI CCCGC 1 cut(s) 411
FauNDI CATATG 1 cut(s) 470
FbaI TGATCA 1 cut(s) 289
Fnu4HI GCNGC 6 cut(s) 8, 92, 219, 255, 416, 423
FriOI GRGCYC 1 cut(s) 136
Fsp4HI GCNGC 6 cut(s) 8, 92, 219, 255, 416, 423
GlaI GCGC 3 cut(s) 159, 593, 652
GluI GCNGC 6 cut(s) 8, 92, 219, 255, 416, 423
HaeII RGCGCY 1 cut(s) 595
HaeIII GGCC 4 cut(s) 188, 385, 404, 704
HapII CCGG 1 cut(s) 514
HgaI GACGC 1 cut(s) 474
HhaI GCGC 3 cut(s) 160, 594, 653
Hin1II CATG 4 cut(s) 334, 500, 577, 629
Hin6I GCGC 3 cut(s) 158, 592, 651
HinP1I GCGC 3 cut(s) 158, 592, 651
HindIII AAGCTT 1 cut(s) 608
HpaII CCGG 1 cut(s) 514
HphI GGTGA 2 cut(s) 284, 364
Hpy188I TCNGA 2 cut(s) 566, 583
Hpy188III TCNNGA 4 cut(s) 175, 519, 626, 667
HpyAV CCTTC 4 cut(s) 299, 310, 516, 561
HpyCH4III ACNGT 1 cut(s) 720
HpyCH4IV ACGT 1 cut(s) 510
HpyCH4V TGCA 8 cut(s) 22, 334, 368, 449, 496, 531, 573, 599
HpyF10VI GCNNNNNNNGC 4 cut(s) 13, 224, 251, 681
HpySE526I ACGT 1 cut(s) 510
Hsp92II CATG 4 cut(s) 334, 500, 577, 629
HspAI GCGC 3 cut(s) 158, 592, 651
Ksp22I TGATCA 1 cut(s) 289
Kzo9I GATC 2 cut(s) 289, 578
LmnI GCTCC 2 cut(s) 4, 645
Lsp1109I GCAGC 6 cut(s) 19, 103, 230, 266, 409, 427
LweI GCATC 3 cut(s) 9, 355, 483
MaeII ACGT 1 cut(s) 510
MalI GATC 2 cut(s) 291, 580
MboI GATC 2 cut(s) 289, 578
MboII GAAGA 3 cut(s) 71, 89, 390
MhlI GDGCHC 2 cut(s) 136, 241
MlsI TGGCCA 1 cut(s) 385
MluCI AATT 3 cut(s) 178, 195, 629
MluI ACGCGT 1 cut(s) 298
MluNI TGGCCA 1 cut(s) 385
MnlI CCTC 5 cut(s) 46, 49, 416, 469, 694
Mox20I TGGCCA 1 cut(s) 385
Mph1103I ATGCAT 2 cut(s) 24, 498
MscI TGGCCA 1 cut(s) 385
MseI TTAA 3 cut(s) 32, 489, 678
MslI CAYNNNNRTG 1 cut(s) 363
Msp20I TGGCCA 1 cut(s) 385
MspA1I CMGCKG 1 cut(s) 418
MspI CCGG 1 cut(s) 514
MspR9I CCNGG 1 cut(s) 85
MvaI CCWGG 1 cut(s) 85
MvnI CGCG 2 cut(s) 300, 444
MwoI GCNNNNNNNGC 4 cut(s) 13, 224, 251, 681
NdeI CATATG 1 cut(s) 470
NdeII GATC 2 cut(s) 289, 578
NlaIII CATG 4 cut(s) 334, 500, 577, 629
NsiI ATGCAT 2 cut(s) 24, 498
NspI RCATGY 1 cut(s) 334
PaeI GCATGC 1 cut(s) 334
PagI TCATGA 1 cut(s) 625
PflMI CCANNNNNTGG 1 cut(s) 301
PkrI GCNGC 6 cut(s) 9, 93, 220, 256, 417, 424
Psp6I CCWGG 1 cut(s) 83
PspGI CCWGG 1 cut(s) 83
PspPI GGNCC 1 cut(s) 403
PstNI CAGNNNCTG 1 cut(s) 392
RsaI GTAC 3 cut(s) 279, 399, 454
RsaNI GTAC 3 cut(s) 278, 398, 453
RseI CAYNNNNRTG 1 cut(s) 363
SaqAI TTAA 3 cut(s) 32, 489, 678
SatI GCNGC 6 cut(s) 8, 92, 219, 255, 416, 423
Sau3AI GATC 2 cut(s) 289, 578
Sau96I GGNCC 1 cut(s) 403
ScrFI CCNGG 1 cut(s) 85
SduI GDGCHC 2 cut(s) 136, 241
SetI ASST 8 cut(s) 156, 283, 345, 394, 454, 513, 572, 612
SfaNI GCATC 3 cut(s) 9, 355, 483
SmiMI CAYNNNNRTG 1 cut(s) 363
SphI GCATGC 1 cut(s) 334
Sse9I AATT 3 cut(s) 178, 195, 629
SsiI CCGC 2 cut(s) 418, 682
SspI AATATT 1 cut(s) 709
StyD4I CCNGG 1 cut(s) 83
TaaI ACNGT 1 cut(s) 720
TaiI ACGT 1 cut(s) 513
TasI AATT 3 cut(s) 178, 195, 629
TatI WGTACW 1 cut(s) 397
Tru1I TTAA 3 cut(s) 32, 489, 678
Tru9I TTAA 3 cut(s) 32, 489, 678
TseI GCWGC 6 cut(s) 7, 91, 218, 254, 415, 422
TspDTI ATGAA 4 cut(s) 207, 513, 614, 642
TspGWI ACGGA 1 cut(s) 386
Van91I CCANNNNNTGG 1 cut(s) 301
XapI RAATTY 1 cut(s) 195
XceI RCATGY 1 cut(s) 334
Zsp2I ATGCAT 2 cut(s) 24, 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.