Rroxscaffold_1G00075670
MYB Family

Trihelix transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0013499
Physical Location & Seq
Forward (+)
96322915 .. 96324998
2084 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00075670.1

Sequence Viewer

Length: 1260 bp
ATGGAGGTGTTGACCGGCGACCGGAATATACCAGACCCAGCAGCGGCAGCAGAAGAACAAGTCTTCCCGGCGCACATATCCCCATTCTCTGAGACACACCAAGTTGTCTTCGCCAATCCAACGGCGGCTGCTATGACTATGACGCCGCAGAAGCTCCGTATCAGGTGCAACGGAAGGTCTCCTGCCGTCGACGCAGCGCCAACTCTAGCAGATGATGCTGATCCGCCCCAACTCGGGTCCGCTGACAACGGCTTGTCACCACATAATGCTGATGAGCATTTTAAAGCACAAGGGGTAGAATTCGTGAATTGGAAGCAGAAGAGGAAGAGAACATCATCTTGTAGTAGTACAAGAAAAAAGAGCAGAAGGCTTGAAATGCTCGAGCATTTTCTGGAAAGTCTGGTAAACAAAATGATGGAGAAGCAAGAGCAGATGCATAAGCAGTTGATAGAGATGGTACAAGACAGGGAGAAAGAGAGAATAGCCAAAGAAGAAGCCTGGAAACAGCACGAGTTGGAGAGAATCACAAGGGATGAAGAGGTAAGAGCCCAAGAGACATCGCGCAGCCTTGCCCTCATTAACTTTGTGCAGAGTTTGTTGGGCAGTGATGTTCAAGTTCCCCAACCAGCACCACTCGTAGCACAACCAGTGGCCACAGTACAACCTCCTACTTCCAATCAATATCATCAATGTGTGAAAGAAAATAAAAATCTTCACAAAGACACAGCGATTGCCAAGTGTATTGCAACACCAACTGATAAAAGATGGCTCCAATTTGAAGTACGGGCACTCATAGCGCTGCGGACTAGTTTGGAACATAAGTTTCACACCCCAATTAATTCTGGCCATGGATCTCTATGGGAGGAGATAGCTCTTGGGATGAACCGTATGGGCTTTGATCGCTCAGGAAGGAAGTGTAAAGAAAAATGGGAAAACATGAACAAGTACTTCAAAAGGGCAATCACAAATGACAAGAAGCGTCCTGCAAATGCTAAGACTTGTCAGTATTTTAATGAATTGGAGTTGCTCTACAAAAACGGACTTCTAAATCTGGGGAATGGCTTTGGTCCCACAAGCAGTCTGGGGAATGGCTTTAGTTGCACAAGCAACCAGAAGGAGACCAAGAGTGAAAACGAGTCCCAACAGTGCGTGCTCAGCAACATTGACACTAGTCTTCTAACTTGTGCGACAATACCATCGGTGTTAAATTCAAATGAAGCTGCCGAAAGAACGAGAGCAGTGGTTTCTTCTGCTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

419

Amino Acids

47.01

Weight (kDa)

8.48

Isoelectric Point (pI)

51.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 254 - 342 9e-20 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47660
fragaria_vesca FvH4_3g00330
malus_domestica MD05G1361500.v1.1 MD10G1338800.v1.1
prunus_persica Prupe.4G003900_v2.0.a1
pyrus_communis pycom05g32800 pycom10g28850
rosa_chinensis RchiOBHm_Chr5g0000511
rosa_laevigata RLG00000030873
rosa_multiflora Rmu_co7961544.1_g000001
rosa_roxburghii Rroxscaffold_1G00075670
rosa_rugosa Rorug04G0384300
rosa_samantha Rh5AG004200 Rh5BG005700 Rh5CG004600 Rh5DG004500 Rh5DG004600
rosa_wichuraiana Rw5G000430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 189
AccII CGCG 1 cut(s) 562
AciI CCGC 6 cut(s) 44, 125, 146, 224, 240, 802
AclWI GGATC 2 cut(s) 215, 859
AcoI YGGCCR 2 cut(s) 651, 844
AcsI RAATTY 2 cut(s) 299, 1207
AcyI GRCGYC 1 cut(s) 143
AfaI GTAC 5 cut(s) 349, 459, 660, 783, 947
AfeI AGCGCT 1 cut(s) 798
AfiI CCNNNNNNNGG 4 cut(s) 21, 43, 233, 234
AgsI TTSAA 5 cut(s) 374, 614, 779, 952, 1212
AhlI ACTAGT 2 cut(s) 806, 1169
AjnI CCWGG 1 cut(s) 497
AloI GAACNNNNNNTCC 2 cut(s) 48, 80
AluBI AGCT 3 cut(s) 154, 872, 1220
AluI AGCT 3 cut(s) 154, 872, 1220
Alw21I GWGCWC 1 cut(s) 1155
Alw26I GTCTC 4 cut(s) 86, 183, 548, 1112
AlwI GGATC 2 cut(s) 215, 859
Ama87I CYCGRG 2 cut(s) 233, 380
Aor51HI AGCGCT 1 cut(s) 798
AoxI GGCC 2 cut(s) 651, 844
ApeKI GCWGC 7 cut(s) 41, 47, 128, 194, 564, 799, 1220
ApoI RAATTY 2 cut(s) 299, 1207
AseI ATTAAT 1 cut(s) 837
AspLEI GCGC 4 cut(s) 73, 199, 564, 799
AspS9I GGNCC 2 cut(s) 237, 1067
AsuC2I CCSGG 1 cut(s) 68
AsuHPI GGTGA 1 cut(s) 249
AvaI CYCGRG 2 cut(s) 233, 380
AvaII GGWCC 2 cut(s) 237, 1067
BaeGI GKGCMC 1 cut(s) 790
BalI TGGCCA 2 cut(s) 653, 846
BanII GRGCYC 1 cut(s) 550
BauI CACGAG 1 cut(s) 509
BbsI GAAGAC 3 cut(s) 55, 100, 1166
Bbv12I GWGCWC 1 cut(s) 1155
BbvI GCAGC 7 cut(s) 53, 59, 115, 206, 576, 786, 1207
BccI CCATC 4 cut(s) 409, 448, 759, 1204
BceAI ACGGC 3 cut(s) 138, 170, 265
BciT130I CCWGG 1 cut(s) 499
BcnI CCSGG 1 cut(s) 68
BcoDI GTCTC 4 cut(s) 86, 183, 548, 1112
BcuI ACTAGT 2 cut(s) 806, 1169
BfaI CTAG 3 cut(s) 206, 807, 1170
BfoI RGCGCY 2 cut(s) 200, 800
BlpI GCTNAGC 1 cut(s) 1154
BmcAI AGTACT 1 cut(s) 947
Bme1390I CCNGG 2 cut(s) 68, 499
Bme18I GGWCC 2 cut(s) 237, 1067
BmeT110I CYCGRG 2 cut(s) 233, 380
BmgT120I GGNCC 2 cut(s) 237, 1067
BmiI GGNNCC 3 cut(s) 238, 770, 1069
BmrFI CCNGG 2 cut(s) 68, 499
BmsI GCATC 2 cut(s) 205, 423
BoxI GACNNNNGTC 1 cut(s) 1170
BpiI GAAGAC 3 cut(s) 55, 100, 1166
Bpu10I CCTNAGC 1 cut(s) 904
Bpu1102I GCTNAGC 1 cut(s) 1154
BpuMI CCSGG 1 cut(s) 68
BsaBI GATNNNNATC 1 cut(s) 219
BsaHI GRCGYC 1 cut(s) 143
BsaI GGTCTC 2 cut(s) 183, 1112
BsaJI CCNNGG 1 cut(s) 847
BsaWI WCCGGW 1 cut(s) 21
Bsc4I CCNNNNNNNGG 4 cut(s) 21, 43, 233, 234
Bse118I RCCGGY 1 cut(s) 14
Bse1I ACTGG 1 cut(s) 647
Bse8I GATNNNNATC 1 cut(s) 219
BseBI CCWGG 1 cut(s) 499
BseDI CCNNGG 1 cut(s) 847
BseGI GGATG 2 cut(s) 538, 885
BseJI GATNNNNATC 1 cut(s) 219
BseLI CCNNNNNNNGG 4 cut(s) 21, 43, 233, 234
BseMII CTCAG 3 cut(s) 81, 918, 1168
BseNI ACTGG 1 cut(s) 647
BseRI GAGGAG 1 cut(s) 878
BseSI GKGCMC 1 cut(s) 790
BseXI GCAGC 7 cut(s) 53, 59, 115, 206, 576, 786, 1207
BseYI CCCAGC 1 cut(s) 37
BsgI GTGCAG 1 cut(s) 608
Bsh1236I CGCG 1 cut(s) 562
Bsh1285I CGRYCG 1 cut(s) 22
BshFI GGCC 2 cut(s) 653, 846
BsiEI CGRYCG 1 cut(s) 22
BsiHKAI GWGCWC 1 cut(s) 1155
BsiHKCI CYCGRG 2 cut(s) 233, 380
BsiSI CCGG 3 cut(s) 15, 22, 68
BslFI GGGAC 2 cut(s) 1053, 1123
BslI CCNNNNNNNGG 4 cut(s) 21, 43, 233, 234
BsmAI GTCTC 4 cut(s) 86, 183, 548, 1112
BsmFI GGGAC 2 cut(s) 1053, 1123
BsnI GGCC 2 cut(s) 653, 846
Bso31I GGTCTC 2 cut(s) 183, 1112
BsoBI CYCGRG 2 cut(s) 233, 380
Bsp1286I GDGCHC 3 cut(s) 550, 790, 1155
Bsp143I GATC 3 cut(s) 220, 851, 898
Bsp1720I GCTNAGC 1 cut(s) 1154
Bsp19I CCATGG 1 cut(s) 847
BspACI CCGC 6 cut(s) 44, 125, 146, 224, 240, 802
BspANI GGCC 2 cut(s) 653, 846
BspCNI CTCAG 3 cut(s) 82, 917, 1167
BspFNI CGCG 1 cut(s) 562
BspLI GGNNCC 3 cut(s) 238, 770, 1069
BspPI GGATC 2 cut(s) 215, 859
BspTNI GGTCTC 2 cut(s) 183, 1112
BsrFI RCCGGY 1 cut(s) 14
BsrI ACTGG 1 cut(s) 647
BssAI RCCGGY 1 cut(s) 14
BssECI CCNNGG 1 cut(s) 847
BssMI GATC 3 cut(s) 220, 851, 898
BssNI GRCGYC 1 cut(s) 143
BssSI CACGAG 1 cut(s) 509
BssT1I CCWWGG 1 cut(s) 847
Bst2BI CACGAG 1 cut(s) 509
Bst2UI CCWGG 1 cut(s) 499
Bst4CI ACNGT 3 cut(s) 658, 887, 1146
Bst6I CTCTTC 3 cut(s) 314, 320, 531
BstACI GRCGYC 1 cut(s) 143
BstAPI GCANNNNNTGC 1 cut(s) 215
BstC8I GCNNGC 1 cut(s) 1151
BstDEI CTNAG 4 cut(s) 90, 904, 993, 1154
BstDSI CCRYGG 1 cut(s) 847
BstF5I GGATG 2 cut(s) 538, 885
BstFNI CGCG 1 cut(s) 562
BstH2I RGCGCY 2 cut(s) 200, 800
BstHHI GCGC 4 cut(s) 73, 199, 564, 799
BstKTI GATC 3 cut(s) 223, 854, 901
BstMAI GTCTC 4 cut(s) 86, 183, 548, 1112
BstMBI GATC 3 cut(s) 220, 851, 898
BstMCI CGRYCG 1 cut(s) 22
BstMWI GCNNNNNNNGC 9 cut(s) 47, 151, 191, 215, 376, 794, 900, 1098, 1155
BstNI CCWGG 1 cut(s) 499
BstPAI GACNNNNGTC 1 cut(s) 1170
BstSCI CCNGG 2 cut(s) 66, 497
BstSLI GKGCMC 1 cut(s) 790
BstUI CGCG 1 cut(s) 562
BstV1I GCAGC 7 cut(s) 53, 59, 115, 206, 576, 786, 1207
BstV2I GAAGAC 3 cut(s) 55, 100, 1166
BstX2I RGATCY 1 cut(s) 851
BstYI RGATCY 1 cut(s) 851
BsuRI GGCC 2 cut(s) 653, 846
BtgI CCRYGG 1 cut(s) 847
BtgZI GCGATG 1 cut(s) 543
BtsCI GGATG 2 cut(s) 538, 885
BtsI GCAGTG 2 cut(s) 610, 1245
BtsIMutI CAGTG 4 cut(s) 610, 654, 1151, 1245
Cac8I GCNNGC 1 cut(s) 1151
CfoI GCGC 4 cut(s) 73, 199, 564, 799
Cfr10I RCCGGY 1 cut(s) 14
Cfr13I GGNCC 2 cut(s) 237, 1067
CseI GACGC 3 cut(s) 151, 200, 968
Csp6I GTAC 5 cut(s) 348, 458, 659, 782, 946
CviAII CATG 2 cut(s) 848, 937
CviQI GTAC 5 cut(s) 348, 458, 659, 782, 946
DdeI CTNAG 4 cut(s) 90, 904, 993, 1154
DpnI GATC 3 cut(s) 222, 853, 900
DpnII GATC 3 cut(s) 220, 851, 898
DraI TTTAAA 1 cut(s) 283
EaeI YGGCCR 2 cut(s) 651, 844
Eam1104I CTCTTC 3 cut(s) 314, 320, 531
EarI CTCTTC 3 cut(s) 314, 320, 531
EciI GGCGGA 1 cut(s) 213
Eco130I CCWWGG 1 cut(s) 847
Eco24I GRGCYC 1 cut(s) 550
Eco31I GGTCTC 2 cut(s) 183, 1112
Eco47I GGWCC 2 cut(s) 237, 1067
Eco47III AGCGCT 1 cut(s) 798
Eco88I CYCGRG 2 cut(s) 233, 380
EcoRI GAATTC 1 cut(s) 299
EcoRII CCWGG 1 cut(s) 497
EcoT14I CCWWGG 1 cut(s) 847
EcoT22I ATGCAT 1 cut(s) 438
EcoT38I GRGCYC 1 cut(s) 550
ErhI CCWWGG 1 cut(s) 847
FaeI CATG 2 cut(s) 851, 940
FaqI GGGAC 2 cut(s) 1053, 1123
FatI CATG 2 cut(s) 847, 936
FblI GTMKAC 1 cut(s) 189
FokI GGATG 2 cut(s) 545, 892
FriOI GRGCYC 1 cut(s) 550
FspBI CTAG 3 cut(s) 206, 807, 1170
GlaI GCGC 4 cut(s) 72, 198, 563, 798
GsaI CCCAGC 1 cut(s) 41
HaeII RGCGCY 2 cut(s) 200, 800
HaeIII GGCC 2 cut(s) 653, 846
HapII CCGG 3 cut(s) 15, 22, 68
HgaI GACGC 3 cut(s) 151, 200, 968
HhaI GCGC 4 cut(s) 73, 199, 564, 799
Hin1I GRCGYC 1 cut(s) 143
Hin1II CATG 2 cut(s) 851, 940
Hin6I GCGC 4 cut(s) 71, 197, 562, 797
HinP1I GCGC 4 cut(s) 71, 197, 562, 797
HincII GTYRAC 2 cut(s) 12, 190
HindII GTYRAC 2 cut(s) 12, 190
HinfI GANTC 2 cut(s) 522, 1136
HpaII CCGG 3 cut(s) 15, 22, 68
HphI GGTGA 1 cut(s) 249
Hpy166II GTNNAC 3 cut(s) 12, 190, 406
Hpy188I TCNGA 1 cut(s) 91
Hpy188III TCNNGA 3 cut(s) 304, 392, 906
Hpy8I GTNNAC 3 cut(s) 12, 190, 406
Hpy99I CGWCG 2 cut(s) 191, 194
HpyAV CCTTC 4 cut(s) 168, 360, 903, 1108
HpyCH4III ACNGT 3 cut(s) 658, 887, 1146
HpyCH4V TGCA 6 cut(s) 168, 436, 589, 746, 986, 1101
HpyF10VI GCNNNNNNNGC 9 cut(s) 47, 151, 191, 215, 376, 794, 900, 1098, 1155
HpyF3I CTNAG 4 cut(s) 90, 904, 993, 1154
Hsp92I GRCGYC 1 cut(s) 143
Hsp92II CATG 2 cut(s) 851, 940
HspAI GCGC 4 cut(s) 71, 197, 562, 797
Kzo9I GATC 3 cut(s) 220, 851, 898
LmnI GCTCC 2 cut(s) 159, 774
Lsp1109I GCAGC 7 cut(s) 53, 59, 115, 206, 576, 786, 1207
LweI GCATC 2 cut(s) 205, 423
MaeI CTAG 3 cut(s) 206, 807, 1170
MaeIII GTNAC 1 cut(s) 255
MalI GATC 3 cut(s) 222, 853, 900
MboI GATC 3 cut(s) 220, 851, 898
MflI RGATCY 1 cut(s) 851
MhlI GDGCHC 3 cut(s) 550, 790, 1155
MlsI TGGCCA 2 cut(s) 653, 846
MluCI AATT 7 cut(s) 299, 307, 773, 834, 838, 1016, 1207
MluNI TGGCCA 2 cut(s) 653, 846
MlyI GAGTC 1 cut(s) 1145
MmeI TCCRAC 2 cut(s) 143, 495
MnlI CCTC 5 cut(s) 315, 532, 584, 675, 856
Mox20I TGGCCA 2 cut(s) 653, 846
Mph1103I ATGCAT 1 cut(s) 438
MscI TGGCCA 2 cut(s) 653, 846
MseI TTAA 6 cut(s) 282, 579, 837, 1011, 1205, 1258
MslI CAYNNNNRTG 1 cut(s) 690
Msp20I TGGCCA 2 cut(s) 653, 846
MspA1I CMGCKG 2 cut(s) 44, 242
MspI CCGG 3 cut(s) 15, 22, 68
MspR9I CCNGG 2 cut(s) 68, 499
MvaI CCWGG 1 cut(s) 499
MvnI CGCG 1 cut(s) 562
MwoI GCNNNNNNNGC 9 cut(s) 47, 151, 191, 215, 376, 794, 900, 1098, 1155
NciI CCSGG 1 cut(s) 68
NcoI CCATGG 1 cut(s) 847
NdeII GATC 3 cut(s) 220, 851, 898
NlaIII CATG 2 cut(s) 851, 940
NlaIV GGNNCC 3 cut(s) 238, 770, 1069
NmuCI GTSAC 1 cut(s) 255
NsiI ATGCAT 1 cut(s) 438
PaeR7I CTCGAG 1 cut(s) 380
PfeI GAWTC 1 cut(s) 522
PleI GAGTC 1 cut(s) 1144
PpsI GAGTC 1 cut(s) 1144
PshAI GACNNNNGTC 1 cut(s) 1170
PshBI ATTAAT 1 cut(s) 837
Psp6I CCWGG 1 cut(s) 497
PspFI CCCAGC 1 cut(s) 37
PspGI CCWGG 1 cut(s) 497
PspN4I GGNNCC 3 cut(s) 238, 770, 1069
PspPI GGNCC 2 cut(s) 237, 1067
PspXI VCTCGAGB 1 cut(s) 380
PsuI RGATCY 1 cut(s) 851
RsaI GTAC 5 cut(s) 349, 459, 660, 783, 947
RsaNI GTAC 5 cut(s) 348, 458, 659, 782, 946
RseI CAYNNNNRTG 1 cut(s) 690
SalI GTCGAC 1 cut(s) 188
SaqAI TTAA 6 cut(s) 282, 579, 837, 1011, 1205, 1258
Sau3AI GATC 3 cut(s) 220, 851, 898
Sau96I GGNCC 2 cut(s) 237, 1067
ScaI AGTACT 1 cut(s) 947
SchI GAGTC 1 cut(s) 1145
ScrFI CCNGG 2 cut(s) 68, 499
SduI GDGCHC 3 cut(s) 550, 790, 1155
SetI ASST 8 cut(s) 9, 156, 167, 179, 543, 667, 874, 1222
SfaNI GCATC 2 cut(s) 205, 423
Sfr274I CTCGAG 1 cut(s) 380
SgrDI CGTCGACG 1 cut(s) 188
SinI GGWCC 2 cut(s) 237, 1067
SlaI CTCGAG 1 cut(s) 380
SmiMI CAYNNNNRTG 1 cut(s) 690
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
SpeI ACTAGT 2 cut(s) 806, 1169
Sse9I AATT 7 cut(s) 299, 307, 773, 834, 838, 1016, 1207
SsiI CCGC 6 cut(s) 44, 125, 146, 224, 240, 802
SspMI CTAG 3 cut(s) 206, 807, 1170
StyD4I CCNGG 2 cut(s) 66, 497
StyI CCWWGG 1 cut(s) 847
TaaI ACNGT 3 cut(s) 658, 887, 1146
TaqI TCGA 2 cut(s) 189, 381
TasI AATT 7 cut(s) 299, 307, 773, 834, 838, 1016, 1207
TatI WGTACW 3 cut(s) 347, 658, 945
TauI GCSGC 3 cut(s) 47, 128, 148
TfiI GAWTC 1 cut(s) 522
Tru1I TTAA 6 cut(s) 282, 579, 837, 1011, 1205, 1258
Tru9I TTAA 6 cut(s) 282, 579, 837, 1011, 1205, 1258
TscAI CASTG 4 cut(s) 610, 654, 1151, 1245
TseFI GTSAC 1 cut(s) 255
TseI GCWGC 7 cut(s) 41, 47, 128, 194, 564, 799, 1220
Tsp45I GTSAC 1 cut(s) 255
TspDTI ATGAA 5 cut(s) 549, 896, 953, 1029, 1230
TspGWI ACGGA 3 cut(s) 146, 186, 1053
TspRI CASTG 4 cut(s) 610, 654, 1151, 1245
VpaK11BI GGWCC 2 cut(s) 237, 1067
VspI ATTAAT 1 cut(s) 837
XapI RAATTY 2 cut(s) 299, 1207
XcmI CCANNNNNNNNNTGG 1 cut(s) 1078
XhoI CTCGAG 1 cut(s) 380
XmiI GTMKAC 1 cut(s) 189
XspI CTAG 3 cut(s) 206, 807, 1170
ZrmI AGTACT 1 cut(s) 947
Zsp2I ATGCAT 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.