Rh5DG004600
MYB Family

Trihelix transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0013499
Physical Location & Seq
Reverse (-)
323173 .. 323909
737 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG004600.1

Sequence Viewer

Length: 291 bp
ATGGAGGTGTTGACCGGCGACCGGAATATACCAGACCCAGCAGCGGCAGCAGAAGAACAAGTCTTCCCGGCGCACATATCCCCATTCTCTGAGACACACCAAGTTGTCTTCGCCAATCCAACGGCGGCTGCTATGACTATGACTATGACGCCGCAGAAGCTCCGTATCAGGTGCAACGGAAGGTCTCCTGCCGTCGACGCAGCACCAACTCTAGCAGATGATGCTGATCCGCCCCAACTCGGCTCCGCTGACAACCGGTCAGTTCCTTCTTCTTATCTCCTCACACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

96

Amino Acids

10.18

Weight (kDa)

4.64

Isoelectric Point (pI)

59.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47660
fragaria_vesca FvH4_3g00330
malus_domestica MD05G1361500.v1.1 MD10G1338800.v1.1
prunus_persica Prupe.4G003900_v2.0.a1
pyrus_communis pycom05g32800 pycom10g28850
rosa_chinensis RchiOBHm_Chr5g0000511
rosa_laevigata RLG00000030873
rosa_multiflora Rmu_co7961544.1_g000001
rosa_roxburghii Rroxscaffold_1G00075670
rosa_rugosa Rorug04G0384300
rosa_samantha Rh5AG004200 Rh5BG005700 Rh5CG004600 Rh5DG004500 Rh5DG004600
rosa_wichuraiana Rw5G000430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 195
AciI CCGC 5 cut(s) 44, 125, 152, 230, 246
AclWI GGATC 1 cut(s) 221
AcyI GRCGYC 1 cut(s) 149
AfiI CCNNNNNNNGG 3 cut(s) 21, 43, 239
AgeI ACCGGT 1 cut(s) 255
AhdI GACNNNNNGTC 1 cut(s) 256
AloI GAACNNNNNNTCC 2 cut(s) 48, 80
AluBI AGCT 1 cut(s) 160
AluI AGCT 1 cut(s) 160
Alw26I GTCTC 2 cut(s) 86, 189
AlwI GGATC 1 cut(s) 221
ApeKI GCWGC 4 cut(s) 41, 47, 128, 200
AsiGI ACCGGT 1 cut(s) 255
AspLEI GCGC 1 cut(s) 73
AsuC2I CCSGG 1 cut(s) 68
BbsI GAAGAC 2 cut(s) 55, 100
BbvI GCAGC 4 cut(s) 53, 59, 115, 212
BceAI ACGGC 2 cut(s) 138, 176
BcnI CCSGG 1 cut(s) 68
BcoDI GTCTC 2 cut(s) 86, 189
BfaI CTAG 1 cut(s) 212
BisI GCNGC 7 cut(s) 42, 45, 48, 126, 129, 152, 201
BlsI GCNGC 7 cut(s) 43, 46, 49, 127, 130, 153, 202
Bme1390I CCNGG 1 cut(s) 68
BmeRI GACNNNNNGTC 1 cut(s) 256
BmiI GGNNCC 1 cut(s) 244
BmrFI CCNGG 1 cut(s) 68
BmsI GCATC 1 cut(s) 211
BpiI GAAGAC 2 cut(s) 55, 100
BpuMI CCSGG 1 cut(s) 68
BsaBI GATNNNNATC 1 cut(s) 225
BsaHI GRCGYC 1 cut(s) 149
BsaI GGTCTC 1 cut(s) 189
BsaWI WCCGGW 2 cut(s) 21, 255
Bsc4I CCNNNNNNNGG 3 cut(s) 21, 43, 239
Bse118I RCCGGY 2 cut(s) 14, 255
Bse8I GATNNNNATC 1 cut(s) 225
BseJI GATNNNNATC 1 cut(s) 225
BseLI CCNNNNNNNGG 3 cut(s) 21, 43, 239
BseMII CTCAG 1 cut(s) 81
BseRI GAGGAG 1 cut(s) 269
BseXI GCAGC 4 cut(s) 53, 59, 115, 212
BseYI CCCAGC 1 cut(s) 37
Bsh1285I CGRYCG 1 cut(s) 22
BshTI ACCGGT 1 cut(s) 255
BsiEI CGRYCG 1 cut(s) 22
BsiSI CCGG 4 cut(s) 15, 22, 68, 256
BslI CCNNNNNNNGG 3 cut(s) 21, 43, 239
BsmAI GTCTC 2 cut(s) 86, 189
Bso31I GGTCTC 1 cut(s) 189
Bsp143I GATC 1 cut(s) 226
BspACI CCGC 5 cut(s) 44, 125, 152, 230, 246
BspCNI CTCAG 1 cut(s) 82
BspLI GGNNCC 1 cut(s) 244
BspPI GGATC 1 cut(s) 221
BspTNI GGTCTC 1 cut(s) 189
BsrFI RCCGGY 2 cut(s) 14, 255
BssAI RCCGGY 2 cut(s) 14, 255
BssMI GATC 1 cut(s) 226
BssNI GRCGYC 1 cut(s) 149
BstACI GRCGYC 1 cut(s) 149
BstAPI GCANNNNNTGC 1 cut(s) 221
BstDEI CTNAG 1 cut(s) 90
BstHHI GCGC 1 cut(s) 73
BstKTI GATC 1 cut(s) 229
BstMAI GTCTC 2 cut(s) 86, 189
BstMBI GATC 1 cut(s) 226
BstMCI CGRYCG 1 cut(s) 22
BstMWI GCNNNNNNNGC 4 cut(s) 47, 157, 197, 221
BstSCI CCNGG 1 cut(s) 66
BstV1I GCAGC 4 cut(s) 53, 59, 115, 212
BstV2I GAAGAC 2 cut(s) 55, 100
CfoI GCGC 1 cut(s) 73
Cfr10I RCCGGY 2 cut(s) 14, 255
CseI GACGC 2 cut(s) 157, 206
CspAI ACCGGT 1 cut(s) 255
CviJI RGCY 3 cut(s) 128, 160, 243
CviKI_1 RGCY 3 cut(s) 128, 160, 243
DdeI CTNAG 1 cut(s) 90
DpnI GATC 1 cut(s) 228
DpnII GATC 1 cut(s) 226
DriI GACNNNNNGTC 1 cut(s) 256
Eam1105I GACNNNNNGTC 1 cut(s) 256
EciI GGCGGA 1 cut(s) 219
Eco31I GGTCTC 1 cut(s) 189
FaiI YATR 5 cut(s) 29, 77, 134, 140, 146
FblI GTMKAC 1 cut(s) 195
Fnu4HI GCNGC 7 cut(s) 42, 45, 48, 126, 129, 152, 201
Fsp4HI GCNGC 7 cut(s) 42, 45, 48, 126, 129, 152, 201
FspBI CTAG 1 cut(s) 212
GlaI GCGC 1 cut(s) 72
GluI GCNGC 7 cut(s) 42, 45, 48, 126, 129, 152, 201
GsaI CCCAGC 1 cut(s) 41
HapII CCGG 4 cut(s) 15, 22, 68, 256
HgaI GACGC 2 cut(s) 157, 206
HhaI GCGC 1 cut(s) 73
Hin1I GRCGYC 1 cut(s) 149
Hin6I GCGC 1 cut(s) 71
HinP1I GCGC 1 cut(s) 71
HincII GTYRAC 2 cut(s) 12, 196
HindII GTYRAC 2 cut(s) 12, 196
HpaII CCGG 4 cut(s) 15, 22, 68, 256
Hpy166II GTNNAC 2 cut(s) 12, 196
Hpy188I TCNGA 1 cut(s) 91
Hpy8I GTNNAC 2 cut(s) 12, 196
Hpy99I CGWCG 2 cut(s) 197, 200
HpyAV CCTTC 2 cut(s) 174, 276
HpyCH4V TGCA 1 cut(s) 174
HpyF10VI GCNNNNNNNGC 4 cut(s) 47, 157, 197, 221
HpyF3I CTNAG 1 cut(s) 90
Hsp92I GRCGYC 1 cut(s) 149
HspAI GCGC 1 cut(s) 71
Kzo9I GATC 1 cut(s) 226
LmnI GCTCC 2 cut(s) 165, 248
LpnPI CCDG 8 cut(s) 28, 35, 45, 51, 81, 154, 201, 269
Lsp1109I GCAGC 4 cut(s) 53, 59, 115, 212
LweI GCATC 1 cut(s) 211
MaeI CTAG 1 cut(s) 212
MalI GATC 1 cut(s) 228
MboI GATC 1 cut(s) 226
MboII GAAGA 4 cut(s) 55, 65, 100, 261
MmeI TCCRAC 1 cut(s) 143
MnlI CCTC 1 cut(s) 290
MspA1I CMGCKG 2 cut(s) 44, 248
MspI CCGG 4 cut(s) 15, 22, 68, 256
MspR9I CCNGG 1 cut(s) 68
MwoI GCNNNNNNNGC 4 cut(s) 47, 157, 197, 221
NciI CCSGG 1 cut(s) 68
NdeII GATC 1 cut(s) 226
NlaIV GGNNCC 1 cut(s) 244
NmeAIII GCCGAG 1 cut(s) 219
PinAI ACCGGT 1 cut(s) 255
PkrI GCNGC 7 cut(s) 43, 46, 49, 127, 130, 153, 202
PspFI CCCAGC 1 cut(s) 37
PspN4I GGNNCC 1 cut(s) 244
SalI GTCGAC 1 cut(s) 194
SatI GCNGC 7 cut(s) 42, 45, 48, 126, 129, 152, 201
Sau3AI GATC 1 cut(s) 226
ScrFI CCNGG 1 cut(s) 68
SetI ASST 4 cut(s) 9, 162, 173, 185
SfaNI GCATC 1 cut(s) 211
SgrDI CGTCGACG 1 cut(s) 194
SsiI CCGC 5 cut(s) 44, 125, 152, 230, 246
SspMI CTAG 1 cut(s) 212
StyD4I CCNGG 1 cut(s) 66
TaqI TCGA 1 cut(s) 195
TauI GCSGC 3 cut(s) 47, 128, 154
TseI GCWGC 4 cut(s) 41, 47, 128, 200
TspGWI ACGGA 2 cut(s) 152, 192
XmiI GTMKAC 1 cut(s) 195
XspI CTAG 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.