MD10G1338800.v1.1
MYB Family

Trihelix transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0013499
Physical Location & Seq
Forward (+)
41481459 .. 41481851
393 bp
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UTR
Exon/CDS
Intron
MD10G1338800.v1.1.491

Sequence Viewer

Length: 393 bp
ATGCAGAGAGACCTGATGTTGGTGAGCCATAGTGATGCAACGAATAGAAGATGGCCAGAAGCTGAAGTACAAGCCCTCATAACGCAGCGGGCTGCTTTCGAACACAAGTTTCGCGTTGCAGGTACTCCAAAGGGACGCATATGGGAGGAGATATCTGTTAAGATGCATGAAATGGGCTACGTCCGGTCAGGAAGGAAGTGCAGGGAGAAATGGAAAAACATCAACAAGTATTTCAGAAGGTGCATGGGATCAGACAATAAGCGCCCTGCAAATGCCAAGCTTTGTCCATATTTTCATGAATTGGAGTTGCTCCAAAAAAGTGAACTTGTAAGTTTCGGGAATGGCTTTAACCGCACAATCAACCAGAACGAGGCCAATATTGAAAAACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

131

Amino Acids

15.33

Weight (kDa)

9.79

Isoelectric Point (pI)

61.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 16 - 103 7.3e-22 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47660
fragaria_vesca FvH4_3g00330
malus_domestica MD05G1361500.v1.1 MD10G1338800.v1.1
prunus_persica Prupe.4G003900_v2.0.a1
pyrus_communis pycom05g32800 pycom10g28850
rosa_chinensis RchiOBHm_Chr5g0000511
rosa_laevigata RLG00000030873
rosa_multiflora Rmu_co7961544.1_g000001
rosa_roxburghii Rroxscaffold_1G00075670
rosa_rugosa Rorug04G0384300
rosa_samantha Rh5AG004200 Rh5BG005700 Rh5CG004600 Rh5DG004500 Rh5DG004600
rosa_wichuraiana Rw5G000430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 110
AccII CGCG 1 cut(s) 114
AciI CCGC 2 cut(s) 88, 352
AclWI GGATC 1 cut(s) 256
AcoI YGGCCR 1 cut(s) 53
AcuI CTGAAG 1 cut(s) 84
AfaI GTAC 2 cut(s) 69, 124
AfiI CCNNNNNNNGG 2 cut(s) 19, 370
AgsI TTSAA 1 cut(s) 383
AluBI AGCT 2 cut(s) 62, 280
AluI AGCT 2 cut(s) 62, 280
Alw26I GTCTC 1 cut(s) 3
AlwI GGATC 1 cut(s) 256
AlwNI CAGNNNCTG 1 cut(s) 62
AoxI GGCC 2 cut(s) 53, 372
ApeKI GCWGC 2 cut(s) 85, 92
AspLEI GCGC 1 cut(s) 264
AsuHPI GGTGA 1 cut(s) 34
AsuII TTCGAA 1 cut(s) 99
BalI TGGCCA 1 cut(s) 55
BarI GAAGNNNNNNTAC 2 cut(s) 51, 83
BbvI GCAGC 2 cut(s) 79, 97
BccI CCATC 1 cut(s) 45
BcoDI GTCTC 1 cut(s) 3
BfoI RGCGCY 1 cut(s) 265
BfuAI ACCTGC 1 cut(s) 110
BisI GCNGC 2 cut(s) 86, 93
BlsI GCNGC 2 cut(s) 87, 94
BmsI GCATC 2 cut(s) 25, 153
Bpu14I TTCGAA 1 cut(s) 99
BsaI GGTCTC 1 cut(s) 3
BsaWI WCCGGW 1 cut(s) 183
Bsc4I CCNNNNNNNGG 2 cut(s) 19, 370
BseLI CCNNNNNNNGG 2 cut(s) 19, 370
BseRI GAGGAG 1 cut(s) 161
BseXI GCAGC 2 cut(s) 79, 97
BsgI GTGCAG 1 cut(s) 220
Bsh1236I CGCG 1 cut(s) 114
BshFI GGCC 2 cut(s) 55, 374
BsiSI CCGG 1 cut(s) 184
BslFI GGGAC 1 cut(s) 147
BslI CCNNNNNNNGG 2 cut(s) 19, 370
BsmAI GTCTC 1 cut(s) 3
BsmFI GGGAC 1 cut(s) 147
BsnI GGCC 2 cut(s) 55, 374
Bso31I GGTCTC 1 cut(s) 3
Bsp119I TTCGAA 1 cut(s) 99
Bsp143I GATC 1 cut(s) 248
BspACI CCGC 2 cut(s) 88, 352
BspANI GGCC 2 cut(s) 55, 374
BspFNI CGCG 1 cut(s) 114
BspHI TCATGA 1 cut(s) 295
BspMI ACCTGC 1 cut(s) 110
BspPI GGATC 1 cut(s) 256
BspT104I TTCGAA 1 cut(s) 99
BspTNI GGTCTC 1 cut(s) 3
BssMI GATC 1 cut(s) 248
Bst4CI ACNGT 1 cut(s) 390
BstBI TTCGAA 1 cut(s) 99
BstC8I GCNNGC 1 cut(s) 90
BstFNI CGCG 1 cut(s) 114
BstH2I RGCGCY 1 cut(s) 265
BstHHI GCGC 1 cut(s) 264
BstKTI GATC 1 cut(s) 251
BstMAI GTCTC 1 cut(s) 3
BstMBI GATC 1 cut(s) 248
BstMWI GCNNNNNNNGC 1 cut(s) 351
BstUI CGCG 1 cut(s) 114
BstV1I GCAGC 2 cut(s) 79, 97
BsuRI GGCC 2 cut(s) 55, 374
BveI ACCTGC 1 cut(s) 110
Cac8I GCNNGC 1 cut(s) 90
CaiI CAGNNNCTG 1 cut(s) 62
CciI TCATGA 1 cut(s) 295
CfoI GCGC 1 cut(s) 264
CseI GACGC 1 cut(s) 144
Csp6I GTAC 2 cut(s) 68, 123
CviAII CATG 3 cut(s) 167, 244, 296
CviJI RGCY 9 cut(s) 27, 55, 62, 74, 92, 177, 280, 345, 374
CviKI_1 RGCY 9 cut(s) 27, 55, 62, 74, 92, 177, 280, 345, 374
CviQI GTAC 2 cut(s) 68, 123
DpnI GATC 1 cut(s) 250
DpnII GATC 1 cut(s) 248
EaeI YGGCCR 1 cut(s) 53
Eco31I GGTCTC 1 cut(s) 3
Eco32I GATATC 1 cut(s) 153
Eco57I CTGAAG 1 cut(s) 84
EcoRV GATATC 1 cut(s) 153
EcoT22I ATGCAT 1 cut(s) 168
FaeI CATG 3 cut(s) 170, 247, 299
FaiI YATR 8 cut(s) 30, 80, 140, 142, 168, 245, 289, 297
FaqI GGGAC 1 cut(s) 147
FatI CATG 3 cut(s) 166, 243, 295
FauI CCCGC 1 cut(s) 81
FauNDI CATATG 1 cut(s) 140
Fnu4HI GCNGC 2 cut(s) 86, 93
Fsp4HI GCNGC 2 cut(s) 86, 93
GlaI GCGC 1 cut(s) 263
GluI GCNGC 2 cut(s) 86, 93
HaeII RGCGCY 1 cut(s) 265
HaeIII GGCC 2 cut(s) 55, 374
HapII CCGG 1 cut(s) 184
HgaI GACGC 1 cut(s) 144
HhaI GCGC 1 cut(s) 264
Hin1II CATG 3 cut(s) 170, 247, 299
Hin6I GCGC 1 cut(s) 262
HinP1I GCGC 1 cut(s) 262
HindIII AAGCTT 1 cut(s) 278
HpaII CCGG 1 cut(s) 184
HphI GGTGA 1 cut(s) 34
Hpy166II GTNNAC 1 cut(s) 323
Hpy188I TCNGA 2 cut(s) 236, 253
Hpy188III TCNNGA 3 cut(s) 189, 296, 337
Hpy8I GTNNAC 1 cut(s) 323
HpyAV CCTTC 2 cut(s) 186, 231
HpyCH4III ACNGT 1 cut(s) 390
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 7 cut(s) 4, 38, 119, 166, 201, 243, 269
HpyF10VI GCNNNNNNNGC 1 cut(s) 351
HpySE526I ACGT 1 cut(s) 180
Hsp92II CATG 3 cut(s) 170, 247, 299
HspAI GCGC 1 cut(s) 262
Kzo9I GATC 1 cut(s) 248
LmnI GCTCC 1 cut(s) 315
LpnPI CCDG 8 cut(s) 26, 69, 105, 174, 187, 197, 279, 377
Lsp1109I GCAGC 2 cut(s) 79, 97
LweI GCATC 2 cut(s) 25, 153
MaeII ACGT 1 cut(s) 180
MalI GATC 1 cut(s) 250
MboI GATC 1 cut(s) 248
MboII GAAGA 1 cut(s) 60
MlsI TGGCCA 1 cut(s) 55
MluCI AATT 1 cut(s) 299
MluNI TGGCCA 1 cut(s) 55
MnlI CCTC 3 cut(s) 86, 139, 364
Mox20I TGGCCA 1 cut(s) 55
Mph1103I ATGCAT 1 cut(s) 168
MscI TGGCCA 1 cut(s) 55
MseI TTAA 2 cut(s) 159, 348
MslI CAYNNNNRTG 1 cut(s) 33
Msp20I TGGCCA 1 cut(s) 55
MspA1I CMGCKG 1 cut(s) 88
MspI CCGG 1 cut(s) 184
MvnI CGCG 1 cut(s) 114
MwoI GCNNNNNNNGC 1 cut(s) 351
NdeI CATATG 1 cut(s) 140
NdeII GATC 1 cut(s) 248
NlaIII CATG 3 cut(s) 170, 247, 299
NsiI ATGCAT 1 cut(s) 168
NspV TTCGAA 1 cut(s) 99
PagI TCATGA 1 cut(s) 295
PkrI GCNGC 2 cut(s) 87, 94
PstNI CAGNNNCTG 1 cut(s) 62
RsaI GTAC 2 cut(s) 69, 124
RsaNI GTAC 2 cut(s) 68, 123
RseI CAYNNNNRTG 1 cut(s) 33
SaqAI TTAA 2 cut(s) 159, 348
SatI GCNGC 2 cut(s) 86, 93
Sau3AI GATC 1 cut(s) 248
SetI ASST 6 cut(s) 15, 64, 124, 183, 242, 282
SfaNI GCATC 2 cut(s) 25, 153
SfuI TTCGAA 1 cut(s) 99
SmiMI CAYNNNNRTG 1 cut(s) 33
Sse9I AATT 1 cut(s) 299
SsiI CCGC 2 cut(s) 88, 352
SspI AATATT 1 cut(s) 379
TaaI ACNGT 1 cut(s) 390
TaiI ACGT 1 cut(s) 183
TaqI TCGA 1 cut(s) 99
TasI AATT 1 cut(s) 299
TatI WGTACW 1 cut(s) 67
Tru1I TTAA 2 cut(s) 159, 348
Tru9I TTAA 2 cut(s) 159, 348
TseI GCWGC 2 cut(s) 85, 92
TspDTI ATGAA 3 cut(s) 183, 284, 312
Zsp2I ATGCAT 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.