RchiOBHm_Chr5g0000511
MYB Family

Trihelix transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0013499
Physical Location & Seq
Reverse (-)
299048 .. 302286
3239 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28205

Sequence Viewer

Length: 1269 bp
ATGGAGGTGTTGACCGGCGACCGGAATATACCAGACCCAGCAGCGGCAGCAGAAGAACAAGTCTTCCCGGCGCACATATCCCCATTCTCTGAGACACACCAAGTTGTCTTCGCCAATCCAACGGCGGCTGCTATGACTATGACGCCGCAGAAGCTCCGTATCAGGTGCAACGGAAGGTCTCCTGCCGTCGACGCAGCACCAACTCTACCAGATGATGCTGATCCGCCCCAACTCGGCTCCGCTGACAACGGCTTGTCACCACATAATGCTGATGAGCATTTTAAAGCACAAGGGGTAGAATTCGTGAATTGGAAGCAGAAGAGGAAGAGAACATCATCTTGTAGTAGTAGTAGTACAAGAAAAAAGAGCAAAAGGCTTGAAATGCTCGAGCATTTTCTGGAAAGTCTGGTAAACAAAATGATGGAGAAGCAAGAGCAGATGCATAAGCAGTTGATAGAGATGGTACAAGACAGGGAGAAAGAGAGAATAGCCAAAGAAGAAGCCTGGAAACAGCACGAGTTGGAGAGAATCACAAGGGATGAGGAGGTAAGAGCCCAACAGACATCGCGCAGCCTTGCCCTCATTAACTTTGTACAGAGTTTGTTGGGCAGTGATGTTCAAGTTCCCCAACCAGCACCACTCGTAGCACAACCAGTGGCAACAGTACAACCTCCTACTTCCAATCAATATCATGATCAACGTGTGAAAGAAAATAAAAATCTTCACAAAGACACAGCGATTGCCAAGTGTATTGCAACACCAACTGATAAAAGATGGCTCCAATTTGAAATACGGGCACTCATAGCGCTGCGGACTAGTTTGGAACATAAGTTTCGCACCCCAATTAATTCTAGCCATGGATCTCTATGGGAGGAGATAGCTCTTGGGATGAACCGTATGGGCTTTGATCGCTCAGGAAGGAAGTGTAAAGAAAAATGGGAAAACATGAACAAGTACTTCAAAAGGGCAATCACAAATGACAAGAAGCGTCCTACAAATGCTAAGACTTGTCAGTATTTTTATGAATTGGAGTTGCTCTACAAAAACGGACTTCTAAATCTGGGAAATGGCTTTAGTCCCACAAGCAGTCTGGGGAATGGCTTTAGTTGCACAAACAACCAGAAGGAGACCAGGAGTGAAAATGAGTCCCAACAGTGCGTGCTCAGCAACGTTGACACTAGTCTTCTAACTTGTGCCACTATACCATCTGTGTTAAATTCAAATGAAGCCGCCGAAAGAACGAGAGCAGTGGTTTCTCCTGCTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

422

Amino Acids

47.57

Weight (kDa)

8.78

Isoelectric Point (pI)

54.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 257 - 344 1.1e-19 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47660
fragaria_vesca FvH4_3g00330
malus_domestica MD05G1361500.v1.1 MD10G1338800.v1.1
prunus_persica Prupe.4G003900_v2.0.a1
pyrus_communis pycom05g32800 pycom10g28850
rosa_chinensis RchiOBHm_Chr5g0000511
rosa_laevigata RLG00000030873
rosa_multiflora Rmu_co7961544.1_g000001
rosa_roxburghii Rroxscaffold_1G00075670
rosa_rugosa Rorug04G0384300
rosa_samantha Rh5AG004200 Rh5BG005700 Rh5CG004600 Rh5DG004500 Rh5DG004600
rosa_wichuraiana Rw5G000430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 189
AccII CGCG 1 cut(s) 568
AciI CCGC 7 cut(s) 44, 125, 146, 224, 240, 811, 1230
AclI AACGTT 1 cut(s) 1170
AclWI GGATC 2 cut(s) 215, 868
AcsI RAATTY 2 cut(s) 299, 1216
AcyI GRCGYC 1 cut(s) 143
AfaI GTAC 5 cut(s) 355, 465, 594, 666, 956
AfeI AGCGCT 1 cut(s) 807
AfiI CCNNNNNNNGG 3 cut(s) 21, 43, 233
AflIII ACRYGT 1 cut(s) 700
AgsI TTSAA 5 cut(s) 380, 620, 788, 961, 1221
AhlI ACTAGT 2 cut(s) 815, 1178
AjnI CCWGG 2 cut(s) 503, 1130
AloI GAACNNNNNNTCC 2 cut(s) 48, 80
AluBI AGCT 2 cut(s) 154, 881
AluI AGCT 2 cut(s) 154, 881
Alw21I GWGCWC 1 cut(s) 1164
Alw26I GTCTC 3 cut(s) 86, 183, 1121
AlwI GGATC 2 cut(s) 215, 868
Ama87I CYCGRG 1 cut(s) 386
Aor51HI AGCGCT 1 cut(s) 807
ApeKI GCWGC 6 cut(s) 41, 47, 128, 194, 570, 808
ApoI RAATTY 2 cut(s) 299, 1216
AseI ATTAAT 1 cut(s) 846
AspLEI GCGC 3 cut(s) 73, 570, 808
AsuC2I CCSGG 1 cut(s) 68
AsuHPI GGTGA 1 cut(s) 249
AvaI CYCGRG 1 cut(s) 386
BaeGI GKGCMC 1 cut(s) 799
BanII GRGCYC 1 cut(s) 556
BauI CACGAG 1 cut(s) 515
BbsI GAAGAC 3 cut(s) 55, 100, 1175
Bbv12I GWGCWC 1 cut(s) 1164
BbvI GCAGC 6 cut(s) 53, 59, 115, 206, 582, 795
BccI CCATC 4 cut(s) 415, 454, 768, 1213
BceAI ACGGC 3 cut(s) 138, 170, 265
BciT130I CCWGG 2 cut(s) 505, 1132
BclI TGATCA 1 cut(s) 694
BcnI CCSGG 1 cut(s) 68
BcoDI GTCTC 3 cut(s) 86, 183, 1121
BcuI ACTAGT 2 cut(s) 815, 1178
BfaI CTAG 3 cut(s) 816, 852, 1179
BfoI RGCGCY 1 cut(s) 809
BlpI GCTNAGC 1 cut(s) 1163
BmcAI AGTACT 1 cut(s) 956
Bme1390I CCNGG 3 cut(s) 68, 505, 1132
BmeT110I CYCGRG 1 cut(s) 386
BmiI GGNNCC 2 cut(s) 238, 779
BmrFI CCNGG 3 cut(s) 68, 505, 1132
BmsI GCATC 2 cut(s) 205, 429
BoxI GACNNNNGTC 1 cut(s) 1179
BpiI GAAGAC 3 cut(s) 55, 100, 1175
Bpu10I CCTNAGC 1 cut(s) 913
Bpu1102I GCTNAGC 1 cut(s) 1163
BpuMI CCSGG 1 cut(s) 68
BsaBI GATNNNNATC 1 cut(s) 219
BsaHI GRCGYC 1 cut(s) 143
BsaI GGTCTC 2 cut(s) 183, 1121
BsaJI CCNNGG 1 cut(s) 856
BsaWI WCCGGW 1 cut(s) 21
Bsc4I CCNNNNNNNGG 3 cut(s) 21, 43, 233
Bse118I RCCGGY 1 cut(s) 14
Bse1I ACTGG 1 cut(s) 653
Bse8I GATNNNNATC 1 cut(s) 219
BseBI CCWGG 2 cut(s) 505, 1132
BseDI CCNNGG 1 cut(s) 856
BseGI GGATG 2 cut(s) 544, 894
BseJI GATNNNNATC 1 cut(s) 219
BseLI CCNNNNNNNGG 3 cut(s) 21, 43, 233
BseMII CTCAG 3 cut(s) 81, 927, 1177
BseNI ACTGG 1 cut(s) 653
BseRI GAGGAG 2 cut(s) 557, 887
BseSI GKGCMC 1 cut(s) 799
BseXI GCAGC 6 cut(s) 53, 59, 115, 206, 582, 795
BseYI CCCAGC 1 cut(s) 37
Bsh1236I CGCG 1 cut(s) 568
Bsh1285I CGRYCG 1 cut(s) 22
BsiEI CGRYCG 1 cut(s) 22
BsiHKAI GWGCWC 1 cut(s) 1164
BsiHKCI CYCGRG 1 cut(s) 386
BsiSI CCGG 3 cut(s) 15, 22, 68
BslFI GGGAC 2 cut(s) 1062, 1132
BslI CCNNNNNNNGG 3 cut(s) 21, 43, 233
BsmAI GTCTC 3 cut(s) 86, 183, 1121
BsmFI GGGAC 2 cut(s) 1062, 1132
Bso31I GGTCTC 2 cut(s) 183, 1121
BsoBI CYCGRG 1 cut(s) 386
Bsp1286I GDGCHC 3 cut(s) 556, 799, 1164
Bsp1407I TGTACA 1 cut(s) 592
Bsp143I GATC 4 cut(s) 220, 694, 860, 907
Bsp1720I GCTNAGC 1 cut(s) 1163
Bsp19I CCATGG 1 cut(s) 856
BspACI CCGC 7 cut(s) 44, 125, 146, 224, 240, 811, 1230
BspCNI CTCAG 3 cut(s) 82, 926, 1176
BspFNI CGCG 1 cut(s) 568
BspHI TCATGA 1 cut(s) 691
BspLI GGNNCC 2 cut(s) 238, 779
BspPI GGATC 2 cut(s) 215, 868
BspTNI GGTCTC 2 cut(s) 183, 1121
BsrFI RCCGGY 1 cut(s) 14
BsrGI TGTACA 1 cut(s) 592
BsrI ACTGG 1 cut(s) 653
BssAI RCCGGY 1 cut(s) 14
BssECI CCNNGG 1 cut(s) 856
BssMI GATC 4 cut(s) 220, 694, 860, 907
BssNI GRCGYC 1 cut(s) 143
BssSI CACGAG 1 cut(s) 515
BssT1I CCWWGG 1 cut(s) 856
Bst2BI CACGAG 1 cut(s) 515
Bst2UI CCWGG 2 cut(s) 505, 1132
Bst4CI ACNGT 3 cut(s) 664, 896, 1155
Bst6I CTCTTC 2 cut(s) 314, 320
BstACI GRCGYC 1 cut(s) 143
BstAUI TGTACA 1 cut(s) 592
BstC8I GCNNGC 1 cut(s) 1160
BstDEI CTNAG 4 cut(s) 90, 913, 1002, 1163
BstDSI CCRYGG 1 cut(s) 856
BstF5I GGATG 2 cut(s) 544, 894
BstFNI CGCG 1 cut(s) 568
BstH2I RGCGCY 1 cut(s) 809
BstHHI GCGC 3 cut(s) 73, 570, 808
BstKTI GATC 4 cut(s) 223, 697, 863, 910
BstMAI GTCTC 3 cut(s) 86, 183, 1121
BstMBI GATC 4 cut(s) 220, 694, 860, 907
BstMCI CGRYCG 1 cut(s) 22
BstMWI GCNNNNNNNGC 8 cut(s) 47, 151, 191, 382, 803, 909, 1107, 1164
BstNI CCWGG 2 cut(s) 505, 1132
BstPAI GACNNNNGTC 1 cut(s) 1179
BstSCI CCNGG 3 cut(s) 66, 503, 1130
BstSLI GKGCMC 1 cut(s) 799
BstUI CGCG 1 cut(s) 568
BstV1I GCAGC 6 cut(s) 53, 59, 115, 206, 582, 795
BstV2I GAAGAC 3 cut(s) 55, 100, 1175
BstX2I RGATCY 1 cut(s) 860
BstYI RGATCY 1 cut(s) 860
BtgI CCRYGG 1 cut(s) 856
BtgZI GCGATG 1 cut(s) 549
BtsCI GGATG 2 cut(s) 544, 894
BtsI GCAGTG 2 cut(s) 616, 1254
BtsIMutI CAGTG 4 cut(s) 616, 660, 1160, 1254
Cac8I GCNNGC 1 cut(s) 1160
CciI TCATGA 1 cut(s) 691
CfoI GCGC 3 cut(s) 73, 570, 808
Cfr10I RCCGGY 1 cut(s) 14
CseI GACGC 3 cut(s) 151, 200, 977
Csp6I GTAC 5 cut(s) 354, 464, 593, 665, 955
CviAII CATG 3 cut(s) 692, 857, 946
CviQI GTAC 5 cut(s) 354, 464, 593, 665, 955
DdeI CTNAG 4 cut(s) 90, 913, 1002, 1163
DpnI GATC 4 cut(s) 222, 696, 862, 909
DpnII GATC 4 cut(s) 220, 694, 860, 907
DraI TTTAAA 1 cut(s) 283
Eam1104I CTCTTC 2 cut(s) 314, 320
EarI CTCTTC 2 cut(s) 314, 320
EciI GGCGGA 1 cut(s) 213
Eco130I CCWWGG 1 cut(s) 856
Eco24I GRGCYC 1 cut(s) 556
Eco31I GGTCTC 2 cut(s) 183, 1121
Eco47III AGCGCT 1 cut(s) 807
Eco88I CYCGRG 1 cut(s) 386
EcoRI GAATTC 1 cut(s) 299
EcoRII CCWGG 2 cut(s) 503, 1130
EcoT14I CCWWGG 1 cut(s) 856
EcoT22I ATGCAT 1 cut(s) 444
EcoT38I GRGCYC 1 cut(s) 556
ErhI CCWWGG 1 cut(s) 856
FaeI CATG 3 cut(s) 695, 860, 949
FaqI GGGAC 2 cut(s) 1062, 1132
FatI CATG 3 cut(s) 691, 856, 945
FbaI TGATCA 1 cut(s) 694
FblI GTMKAC 1 cut(s) 189
FokI GGATG 2 cut(s) 551, 901
FriOI GRGCYC 1 cut(s) 556
FspBI CTAG 3 cut(s) 816, 852, 1179
GlaI GCGC 3 cut(s) 72, 569, 807
GsaI CCCAGC 1 cut(s) 41
HaeII RGCGCY 1 cut(s) 809
HapII CCGG 3 cut(s) 15, 22, 68
HgaI GACGC 3 cut(s) 151, 200, 977
HhaI GCGC 3 cut(s) 73, 570, 808
Hin1I GRCGYC 1 cut(s) 143
Hin1II CATG 3 cut(s) 695, 860, 949
Hin6I GCGC 3 cut(s) 71, 568, 806
HinP1I GCGC 3 cut(s) 71, 568, 806
HincII GTYRAC 3 cut(s) 12, 190, 1174
HindII GTYRAC 3 cut(s) 12, 190, 1174
HinfI GANTC 2 cut(s) 528, 1145
HpaII CCGG 3 cut(s) 15, 22, 68
HphI GGTGA 1 cut(s) 249
Hpy166II GTNNAC 4 cut(s) 12, 190, 412, 1174
Hpy188I TCNGA 1 cut(s) 91
Hpy188III TCNNGA 4 cut(s) 304, 398, 692, 915
Hpy8I GTNNAC 4 cut(s) 12, 190, 412, 1174
Hpy99I CGWCG 2 cut(s) 191, 194
HpyAV CCTTC 3 cut(s) 168, 912, 1117
HpyCH4III ACNGT 3 cut(s) 664, 896, 1155
HpyCH4IV ACGT 2 cut(s) 700, 1170
HpyCH4V TGCA 4 cut(s) 168, 442, 755, 1110
HpyF10VI GCNNNNNNNGC 8 cut(s) 47, 151, 191, 382, 803, 909, 1107, 1164
HpyF3I CTNAG 4 cut(s) 90, 913, 1002, 1163
HpySE526I ACGT 2 cut(s) 700, 1170
Hsp92I GRCGYC 1 cut(s) 143
Hsp92II CATG 3 cut(s) 695, 860, 949
HspAI GCGC 3 cut(s) 71, 568, 806
Ksp22I TGATCA 1 cut(s) 694
Kzo9I GATC 4 cut(s) 220, 694, 860, 907
LmnI GCTCC 3 cut(s) 159, 242, 783
Lsp1109I GCAGC 6 cut(s) 53, 59, 115, 206, 582, 795
LweI GCATC 2 cut(s) 205, 429
MaeI CTAG 3 cut(s) 816, 852, 1179
MaeII ACGT 2 cut(s) 700, 1170
MaeIII GTNAC 1 cut(s) 255
MalI GATC 4 cut(s) 222, 696, 862, 909
MboI GATC 4 cut(s) 220, 694, 860, 907
MboII GAAGA 8 cut(s) 55, 65, 100, 331, 337, 509, 713, 1175
MflI RGATCY 1 cut(s) 860
MhlI GDGCHC 3 cut(s) 556, 799, 1164
MluCI AATT 7 cut(s) 299, 307, 782, 843, 847, 1025, 1216
MlyI GAGTC 1 cut(s) 1154
MmeI TCCRAC 2 cut(s) 143, 501
MnlI CCTC 6 cut(s) 315, 535, 538, 590, 681, 865
Mph1103I ATGCAT 1 cut(s) 444
MseI TTAA 5 cut(s) 282, 585, 846, 1214, 1267
MspA1I CMGCKG 2 cut(s) 44, 242
MspI CCGG 3 cut(s) 15, 22, 68
MspR9I CCNGG 3 cut(s) 68, 505, 1132
MvaI CCWGG 2 cut(s) 505, 1132
MvnI CGCG 1 cut(s) 568
MwoI GCNNNNNNNGC 8 cut(s) 47, 151, 191, 382, 803, 909, 1107, 1164
NciI CCSGG 1 cut(s) 68
NcoI CCATGG 1 cut(s) 856
NdeII GATC 4 cut(s) 220, 694, 860, 907
NlaIII CATG 3 cut(s) 695, 860, 949
NlaIV GGNNCC 2 cut(s) 238, 779
NmeAIII GCCGAG 1 cut(s) 213
NmuCI GTSAC 1 cut(s) 255
NsiI ATGCAT 1 cut(s) 444
PaeR7I CTCGAG 1 cut(s) 386
PagI TCATGA 1 cut(s) 691
PfeI GAWTC 1 cut(s) 528
PleI GAGTC 1 cut(s) 1153
PpsI GAGTC 1 cut(s) 1153
PshAI GACNNNNGTC 1 cut(s) 1179
PshBI ATTAAT 1 cut(s) 846
Psp1406I AACGTT 1 cut(s) 1170
Psp6I CCWGG 2 cut(s) 503, 1130
PspFI CCCAGC 1 cut(s) 37
PspGI CCWGG 2 cut(s) 503, 1130
PspN4I GGNNCC 2 cut(s) 238, 779
PspXI VCTCGAGB 1 cut(s) 386
PsuI RGATCY 1 cut(s) 860
RsaI GTAC 5 cut(s) 355, 465, 594, 666, 956
RsaNI GTAC 5 cut(s) 354, 464, 593, 665, 955
SalI GTCGAC 1 cut(s) 188
SaqAI TTAA 5 cut(s) 282, 585, 846, 1214, 1267
Sau3AI GATC 4 cut(s) 220, 694, 860, 907
ScaI AGTACT 1 cut(s) 956
SchI GAGTC 1 cut(s) 1154
ScrFI CCNGG 3 cut(s) 68, 505, 1132
SduI GDGCHC 3 cut(s) 556, 799, 1164
SetI ASST 9 cut(s) 9, 156, 167, 179, 549, 673, 703, 883, 1173
SfaNI GCATC 2 cut(s) 205, 429
Sfr274I CTCGAG 1 cut(s) 386
SgrDI CGTCGACG 1 cut(s) 188
SlaI CTCGAG 1 cut(s) 386
SmlI CTYRAG 1 cut(s) 386
SmoI CTYRAG 1 cut(s) 386
SpeI ACTAGT 2 cut(s) 815, 1178
Sse9I AATT 7 cut(s) 299, 307, 782, 843, 847, 1025, 1216
SsiI CCGC 7 cut(s) 44, 125, 146, 224, 240, 811, 1230
SspMI CTAG 3 cut(s) 816, 852, 1179
StyD4I CCNGG 3 cut(s) 66, 503, 1130
StyI CCWWGG 1 cut(s) 856
TaaI ACNGT 3 cut(s) 664, 896, 1155
TaiI ACGT 2 cut(s) 703, 1173
TaqI TCGA 2 cut(s) 189, 387
TasI AATT 7 cut(s) 299, 307, 782, 843, 847, 1025, 1216
TatI WGTACW 4 cut(s) 353, 592, 664, 954
TauI GCSGC 4 cut(s) 47, 128, 148, 1232
TfiI GAWTC 1 cut(s) 528
Tru1I TTAA 5 cut(s) 282, 585, 846, 1214, 1267
Tru9I TTAA 5 cut(s) 282, 585, 846, 1214, 1267
TscAI CASTG 4 cut(s) 616, 660, 1160, 1254
TseFI GTSAC 1 cut(s) 255
TseI GCWGC 6 cut(s) 41, 47, 128, 194, 570, 808
Tsp45I GTSAC 1 cut(s) 255
TspDTI ATGAA 4 cut(s) 905, 962, 1038, 1239
TspGWI ACGGA 3 cut(s) 146, 186, 1062
TspRI CASTG 4 cut(s) 616, 660, 1160, 1254
VspI ATTAAT 1 cut(s) 846
XapI RAATTY 2 cut(s) 299, 1216
XcmI CCANNNNNNNNNTGG 1 cut(s) 1087
XhoI CTCGAG 1 cut(s) 386
XmiI GTMKAC 1 cut(s) 189
XspI CTAG 3 cut(s) 816, 852, 1179
ZrmI AGTACT 1 cut(s) 956
Zsp2I ATGCAT 1 cut(s) 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.