RLG00000030873
MYB Family

Trihelix transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0013499
Physical Location & Seq
Reverse (-)
347009 .. 348707
1699 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030873

Sequence Viewer

Length: 1260 bp
ATGGAGGTGTTGACCGGCGACCGGAATATACCAGACCCAGCAGCAGCAGCAGAAGAACAAGTTTTCCCGGCGCACATATCCCCATTCTCTGAGACACCCCAAGTTGTCTTCGCCAATCCAACGGCGGCTGCTATGACTATGACGCCGCAGAAGCTCCGTATCAGGTGCAACGGAAGGTCTCCTGCCGTCGACGCAGCACCAACTCTAGCAGATGATGCTGATCCGCCCCAACTCGGGTCCGCTCACAACGGCTTGTCACCGCATAATGCTGATGAGCATTTTAAAGCACAAGGTGTAGAATTCGTGAATTGGAAGCAGAAGAGGAAGAGAACATCATCTTGTAGTAGTACAAGAAAAAAGAGCAAAAGGCTTGAAATGCTCGAGCATTTTCTGGAAAGTCTGGTCAACAAAATGATGGAGAAGCAAGAGCAGATGCATAAGCAGTTGATAGAGATGGTACAAGACAGGGAGAAAGAGAGAATAGCCAAAGAAGAAGCCTGGAAACAGCACGAGTTGGAGAGAATCAAAAGGGATGAGGAGGTAAGAGCCCAAGAGACATCGCGCAGCCTTGCCCTCATTAACTTTGTACAGAGTTTGTTGGGCAATGATGTTCAAGTTCCCCAACCAGCACCACTCGTAGCACAACCAGTGGCAACAGTACAACCTCCTACTTCCAATCAATATCATCAATGTGTGAAAGAAAATAAAAATCTTCACAAAGACACAGCGATTGCCAAGTGTATTGCAACACCAACTGATAAAAGATGGCTCCAATTTGAAGTACGGGCACTCATAGCGCTGCGGACTAGTTTGGAACATAAGTTTCACACCCCAATTAATTCTAGCCATGGATCTCTATGGGAGGAGATAGCTCTTGGGATGAACCGTATGGGCTTTGATCGCTCAGGAAGGAAGTGCAAAGAAAAATGGGAAAACATGAACAAGTACTTCAAAAGGGCAATCACAAATGACAAGAAGCGTCCTGCAAATGCTAAGACTTGTCTGTATTTTAATGAATTGGAGTTGCTCTACAAAAACGGACTTCTAAATCTGGGGAATGGCTTTAGTCCCACAAGCAGTCTGGGGAATGGCTTTAGTTGCACAAGCAACCAGAAGGAGACCAAGAGTGAAAACGAGTCCCAACAGTGCGTGCTCAGCAACATTGACACTAGTCTTCTAACTTGTGCCACAATACCATCGGTGTTAAATTCAAATGAAGCTGCCGAAAGAACGAGAGCAGTGGTTTCTCCTGCTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

420

Amino Acids

47.07

Weight (kDa)

8.74

Isoelectric Point (pI)

55.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 254 - 342 4e-19 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47660
fragaria_vesca FvH4_3g00330
malus_domestica MD05G1361500.v1.1 MD10G1338800.v1.1
prunus_persica Prupe.4G003900_v2.0.a1
pyrus_communis pycom05g32800 pycom10g28850
rosa_chinensis RchiOBHm_Chr5g0000511
rosa_laevigata RLG00000030873
rosa_multiflora Rmu_co7961544.1_g000001
rosa_roxburghii Rroxscaffold_1G00075670
rosa_rugosa Rorug04G0384300
rosa_samantha Rh5AG004200 Rh5BG005700 Rh5CG004600 Rh5DG004500 Rh5DG004600
rosa_wichuraiana Rw5G000430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 242
AccI GTMKAC 1 cut(s) 189
AccII CGCG 1 cut(s) 562
AciI CCGC 6 cut(s) 125, 146, 224, 240, 260, 802
AclWI GGATC 2 cut(s) 215, 859
AcsI RAATTY 2 cut(s) 299, 1207
AcyI GRCGYC 1 cut(s) 143
AdeI CACNNNGTG 1 cut(s) 293
AfaI GTAC 6 cut(s) 349, 459, 588, 660, 783, 947
AfeI AGCGCT 1 cut(s) 798
AfiI CCNNNNNNNGG 3 cut(s) 21, 233, 234
AgsI TTSAA 5 cut(s) 374, 614, 779, 952, 1212
AhlI ACTAGT 2 cut(s) 806, 1169
AjnI CCWGG 1 cut(s) 497
AloI GAACNNNNNNTCC 2 cut(s) 48, 80
AluBI AGCT 3 cut(s) 154, 872, 1220
AluI AGCT 3 cut(s) 154, 872, 1220
Alw21I GWGCWC 1 cut(s) 1155
Alw26I GTCTC 4 cut(s) 86, 183, 548, 1112
AlwI GGATC 2 cut(s) 215, 859
Ama87I CYCGRG 2 cut(s) 233, 380
Aor51HI AGCGCT 1 cut(s) 798
ApeKI GCWGC 8 cut(s) 41, 44, 47, 128, 194, 564, 799, 1220
ApoI RAATTY 2 cut(s) 299, 1207
AseI ATTAAT 1 cut(s) 837
AspLEI GCGC 3 cut(s) 73, 564, 799
AspS9I GGNCC 1 cut(s) 237
AsuC2I CCSGG 1 cut(s) 68
AsuHPI GGTGA 1 cut(s) 249
AvaI CYCGRG 2 cut(s) 233, 380
AvaII GGWCC 1 cut(s) 237
BaeGI GKGCMC 1 cut(s) 790
BanII GRGCYC 1 cut(s) 550
BauI CACGAG 1 cut(s) 509
BbsI GAAGAC 2 cut(s) 100, 1166
Bbv12I GWGCWC 1 cut(s) 1155
BbvI GCAGC 8 cut(s) 53, 56, 59, 115, 206, 576, 786, 1207
BccI CCATC 4 cut(s) 409, 448, 759, 1204
BceAI ACGGC 3 cut(s) 138, 170, 265
BciT130I CCWGG 1 cut(s) 499
BcnI CCSGG 1 cut(s) 68
BcoDI GTCTC 4 cut(s) 86, 183, 548, 1112
BcuI ACTAGT 2 cut(s) 806, 1169
BfaI CTAG 4 cut(s) 206, 807, 843, 1170
BfoI RGCGCY 1 cut(s) 800
BlpI GCTNAGC 1 cut(s) 1154
BmcAI AGTACT 1 cut(s) 947
Bme1390I CCNGG 2 cut(s) 68, 499
Bme18I GGWCC 1 cut(s) 237
BmeT110I CYCGRG 2 cut(s) 233, 380
BmgT120I GGNCC 1 cut(s) 237
BmiI GGNNCC 2 cut(s) 238, 770
BmrFI CCNGG 2 cut(s) 68, 499
BmsI GCATC 2 cut(s) 205, 423
BoxI GACNNNNGTC 1 cut(s) 1170
BpiI GAAGAC 2 cut(s) 100, 1166
Bpu10I CCTNAGC 1 cut(s) 904
Bpu1102I GCTNAGC 1 cut(s) 1154
BpuMI CCSGG 1 cut(s) 68
BsaBI GATNNNNATC 1 cut(s) 219
BsaHI GRCGYC 1 cut(s) 143
BsaI GGTCTC 2 cut(s) 183, 1112
BsaJI CCNNGG 1 cut(s) 847
BsaWI WCCGGW 1 cut(s) 21
Bsc4I CCNNNNNNNGG 3 cut(s) 21, 233, 234
Bse118I RCCGGY 1 cut(s) 14
Bse1I ACTGG 1 cut(s) 647
Bse3DI GCAATG 1 cut(s) 610
Bse8I GATNNNNATC 1 cut(s) 219
BseBI CCWGG 1 cut(s) 499
BseDI CCNNGG 1 cut(s) 847
BseGI GGATG 2 cut(s) 538, 885
BseJI GATNNNNATC 1 cut(s) 219
BseLI CCNNNNNNNGG 3 cut(s) 21, 233, 234
BseMI GCAATG 1 cut(s) 610
BseMII CTCAG 3 cut(s) 81, 918, 1168
BseNI ACTGG 1 cut(s) 647
BseRI GAGGAG 2 cut(s) 551, 878
BseSI GKGCMC 1 cut(s) 790
BseXI GCAGC 8 cut(s) 53, 56, 59, 115, 206, 576, 786, 1207
BseYI CCCAGC 1 cut(s) 37
Bsh1236I CGCG 1 cut(s) 562
Bsh1285I CGRYCG 1 cut(s) 22
BsiEI CGRYCG 1 cut(s) 22
BsiHKAI GWGCWC 1 cut(s) 1155
BsiHKCI CYCGRG 2 cut(s) 233, 380
BsiSI CCGG 3 cut(s) 15, 22, 68
BslFI GGGAC 2 cut(s) 1053, 1123
BslI CCNNNNNNNGG 3 cut(s) 21, 233, 234
BsmAI GTCTC 4 cut(s) 86, 183, 548, 1112
BsmFI GGGAC 2 cut(s) 1053, 1123
Bso31I GGTCTC 2 cut(s) 183, 1112
BsoBI CYCGRG 2 cut(s) 233, 380
Bsp1286I GDGCHC 3 cut(s) 550, 790, 1155
Bsp1407I TGTACA 1 cut(s) 586
Bsp143I GATC 3 cut(s) 220, 851, 898
Bsp1720I GCTNAGC 1 cut(s) 1154
Bsp19I CCATGG 1 cut(s) 847
BspACI CCGC 6 cut(s) 125, 146, 224, 240, 260, 802
BspCNI CTCAG 3 cut(s) 82, 917, 1167
BspFNI CGCG 1 cut(s) 562
BspLI GGNNCC 2 cut(s) 238, 770
BspPI GGATC 2 cut(s) 215, 859
BspTNI GGTCTC 2 cut(s) 183, 1112
BsrBI CCGCTC 1 cut(s) 242
BsrDI GCAATG 1 cut(s) 610
BsrFI RCCGGY 1 cut(s) 14
BsrGI TGTACA 1 cut(s) 586
BsrI ACTGG 1 cut(s) 647
BssAI RCCGGY 1 cut(s) 14
BssECI CCNNGG 1 cut(s) 847
BssMI GATC 3 cut(s) 220, 851, 898
BssNI GRCGYC 1 cut(s) 143
BssSI CACGAG 1 cut(s) 509
BssT1I CCWWGG 1 cut(s) 847
Bst2BI CACGAG 1 cut(s) 509
Bst2UI CCWGG 1 cut(s) 499
Bst4CI ACNGT 3 cut(s) 658, 887, 1146
Bst6I CTCTTC 2 cut(s) 314, 320
BstACI GRCGYC 1 cut(s) 143
BstAPI GCANNNNNTGC 1 cut(s) 215
BstAUI TGTACA 1 cut(s) 586
BstC8I GCNNGC 1 cut(s) 1151
BstDEI CTNAG 4 cut(s) 90, 904, 993, 1154
BstDSI CCRYGG 1 cut(s) 847
BstF5I GGATG 2 cut(s) 538, 885
BstFNI CGCG 1 cut(s) 562
BstH2I RGCGCY 1 cut(s) 800
BstHHI GCGC 3 cut(s) 73, 564, 799
BstKTI GATC 3 cut(s) 223, 854, 901
BstMAI GTCTC 4 cut(s) 86, 183, 548, 1112
BstMBI GATC 3 cut(s) 220, 851, 898
BstMCI CGRYCG 1 cut(s) 22
BstMWI GCNNNNNNNGC 9 cut(s) 47, 151, 191, 215, 376, 794, 900, 1098, 1155
BstNI CCWGG 1 cut(s) 499
BstPAI GACNNNNGTC 1 cut(s) 1170
BstSCI CCNGG 2 cut(s) 66, 497
BstSLI GKGCMC 1 cut(s) 790
BstUI CGCG 1 cut(s) 562
BstV1I GCAGC 8 cut(s) 53, 56, 59, 115, 206, 576, 786, 1207
BstV2I GAAGAC 2 cut(s) 100, 1166
BstX2I RGATCY 1 cut(s) 851
BstYI RGATCY 1 cut(s) 851
BtgI CCRYGG 1 cut(s) 847
BtgZI GCGATG 1 cut(s) 543
BtsCI GGATG 2 cut(s) 538, 885
BtsI GCAGTG 1 cut(s) 1245
BtsIMutI CAGTG 3 cut(s) 654, 1151, 1245
Cac8I GCNNGC 1 cut(s) 1151
CfoI GCGC 3 cut(s) 73, 564, 799
Cfr10I RCCGGY 1 cut(s) 14
Cfr13I GGNCC 1 cut(s) 237
CseI GACGC 3 cut(s) 151, 200, 968
Csp6I GTAC 6 cut(s) 348, 458, 587, 659, 782, 946
CviAII CATG 2 cut(s) 848, 937
CviQI GTAC 6 cut(s) 348, 458, 587, 659, 782, 946
DdeI CTNAG 4 cut(s) 90, 904, 993, 1154
DpnI GATC 3 cut(s) 222, 853, 900
DpnII GATC 3 cut(s) 220, 851, 898
DraI TTTAAA 1 cut(s) 283
DraIII CACNNNGTG 1 cut(s) 293
Eam1104I CTCTTC 2 cut(s) 314, 320
EarI CTCTTC 2 cut(s) 314, 320
EciI GGCGGA 1 cut(s) 213
Eco130I CCWWGG 1 cut(s) 847
Eco24I GRGCYC 1 cut(s) 550
Eco31I GGTCTC 2 cut(s) 183, 1112
Eco47I GGWCC 1 cut(s) 237
Eco47III AGCGCT 1 cut(s) 798
Eco88I CYCGRG 2 cut(s) 233, 380
EcoRI GAATTC 1 cut(s) 299
EcoRII CCWGG 1 cut(s) 497
EcoT14I CCWWGG 1 cut(s) 847
EcoT22I ATGCAT 1 cut(s) 438
EcoT38I GRGCYC 1 cut(s) 550
ErhI CCWWGG 1 cut(s) 847
FaeI CATG 2 cut(s) 851, 940
FaqI GGGAC 2 cut(s) 1053, 1123
FatI CATG 2 cut(s) 847, 936
FblI GTMKAC 1 cut(s) 189
FokI GGATG 2 cut(s) 545, 892
FriOI GRGCYC 1 cut(s) 550
FspBI CTAG 4 cut(s) 206, 807, 843, 1170
GlaI GCGC 3 cut(s) 72, 563, 798
GsaI CCCAGC 1 cut(s) 41
HaeII RGCGCY 1 cut(s) 800
HapII CCGG 3 cut(s) 15, 22, 68
HgaI GACGC 3 cut(s) 151, 200, 968
HhaI GCGC 3 cut(s) 73, 564, 799
Hin1I GRCGYC 1 cut(s) 143
Hin1II CATG 2 cut(s) 851, 940
Hin6I GCGC 3 cut(s) 71, 562, 797
HinP1I GCGC 3 cut(s) 71, 562, 797
HincII GTYRAC 3 cut(s) 12, 190, 406
HindII GTYRAC 3 cut(s) 12, 190, 406
HinfI GANTC 2 cut(s) 522, 1136
HpaII CCGG 3 cut(s) 15, 22, 68
HphI GGTGA 1 cut(s) 249
Hpy166II GTNNAC 3 cut(s) 12, 190, 406
Hpy188I TCNGA 1 cut(s) 91
Hpy188III TCNNGA 3 cut(s) 304, 392, 906
Hpy8I GTNNAC 3 cut(s) 12, 190, 406
Hpy99I CGWCG 2 cut(s) 191, 194
HpyAV CCTTC 3 cut(s) 168, 903, 1108
HpyCH4III ACNGT 3 cut(s) 658, 887, 1146
HpyCH4V TGCA 6 cut(s) 168, 436, 746, 918, 986, 1101
HpyF10VI GCNNNNNNNGC 9 cut(s) 47, 151, 191, 215, 376, 794, 900, 1098, 1155
HpyF3I CTNAG 4 cut(s) 90, 904, 993, 1154
Hsp92I GRCGYC 1 cut(s) 143
Hsp92II CATG 2 cut(s) 851, 940
HspAI GCGC 3 cut(s) 71, 562, 797
Kzo9I GATC 3 cut(s) 220, 851, 898
LmnI GCTCC 2 cut(s) 159, 774
Lsp1109I GCAGC 8 cut(s) 53, 56, 59, 115, 206, 576, 786, 1207
LweI GCATC 2 cut(s) 205, 423
MaeI CTAG 4 cut(s) 206, 807, 843, 1170
MaeIII GTNAC 1 cut(s) 255
MalI GATC 3 cut(s) 222, 853, 900
MbiI CCGCTC 1 cut(s) 242
MboI GATC 3 cut(s) 220, 851, 898
MboII GAAGA 7 cut(s) 65, 100, 331, 337, 503, 704, 1166
MflI RGATCY 1 cut(s) 851
MhlI GDGCHC 3 cut(s) 550, 790, 1155
MluCI AATT 7 cut(s) 299, 307, 773, 834, 838, 1016, 1207
MlyI GAGTC 1 cut(s) 1145
MmeI TCCRAC 2 cut(s) 143, 495
MnlI CCTC 6 cut(s) 315, 529, 532, 584, 675, 856
Mph1103I ATGCAT 1 cut(s) 438
MseI TTAA 5 cut(s) 282, 579, 837, 1011, 1205
MslI CAYNNNNRTG 1 cut(s) 690
MspI CCGG 3 cut(s) 15, 22, 68
MspR9I CCNGG 2 cut(s) 68, 499
MvaI CCWGG 1 cut(s) 499
MvnI CGCG 1 cut(s) 562
MwoI GCNNNNNNNGC 9 cut(s) 47, 151, 191, 215, 376, 794, 900, 1098, 1155
NciI CCSGG 1 cut(s) 68
NcoI CCATGG 1 cut(s) 847
NdeII GATC 3 cut(s) 220, 851, 898
NlaIII CATG 2 cut(s) 851, 940
NlaIV GGNNCC 2 cut(s) 238, 770
NmuCI GTSAC 1 cut(s) 255
NsiI ATGCAT 1 cut(s) 438
PaeR7I CTCGAG 1 cut(s) 380
PfeI GAWTC 1 cut(s) 522
PleI GAGTC 1 cut(s) 1144
PpsI GAGTC 1 cut(s) 1144
PshAI GACNNNNGTC 1 cut(s) 1170
PshBI ATTAAT 1 cut(s) 837
Psp6I CCWGG 1 cut(s) 497
PspFI CCCAGC 1 cut(s) 37
PspGI CCWGG 1 cut(s) 497
PspN4I GGNNCC 2 cut(s) 238, 770
PspPI GGNCC 1 cut(s) 237
PspXI VCTCGAGB 1 cut(s) 380
PsuI RGATCY 1 cut(s) 851
RsaI GTAC 6 cut(s) 349, 459, 588, 660, 783, 947
RsaNI GTAC 6 cut(s) 348, 458, 587, 659, 782, 946
RseI CAYNNNNRTG 1 cut(s) 690
SalI GTCGAC 1 cut(s) 188
SaqAI TTAA 5 cut(s) 282, 579, 837, 1011, 1205
Sau3AI GATC 3 cut(s) 220, 851, 898
Sau96I GGNCC 1 cut(s) 237
ScaI AGTACT 1 cut(s) 947
SchI GAGTC 1 cut(s) 1145
ScrFI CCNGG 2 cut(s) 68, 499
SduI GDGCHC 3 cut(s) 550, 790, 1155
SetI ASST 9 cut(s) 9, 156, 167, 179, 295, 543, 667, 874, 1222
SfaNI GCATC 2 cut(s) 205, 423
Sfr274I CTCGAG 1 cut(s) 380
SgrDI CGTCGACG 1 cut(s) 188
SinI GGWCC 1 cut(s) 237
SlaI CTCGAG 1 cut(s) 380
SmiMI CAYNNNNRTG 1 cut(s) 690
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
SpeI ACTAGT 2 cut(s) 806, 1169
Sse9I AATT 7 cut(s) 299, 307, 773, 834, 838, 1016, 1207
SsiI CCGC 6 cut(s) 125, 146, 224, 240, 260, 802
SspMI CTAG 4 cut(s) 206, 807, 843, 1170
StyD4I CCNGG 2 cut(s) 66, 497
StyI CCWWGG 1 cut(s) 847
TaaI ACNGT 3 cut(s) 658, 887, 1146
TaqI TCGA 2 cut(s) 189, 381
TasI AATT 7 cut(s) 299, 307, 773, 834, 838, 1016, 1207
TatI WGTACW 4 cut(s) 347, 586, 658, 945
TauI GCSGC 2 cut(s) 128, 148
TfiI GAWTC 1 cut(s) 522
Tru1I TTAA 5 cut(s) 282, 579, 837, 1011, 1205
Tru9I TTAA 5 cut(s) 282, 579, 837, 1011, 1205
TscAI CASTG 3 cut(s) 654, 1151, 1245
TseFI GTSAC 1 cut(s) 255
TseI GCWGC 8 cut(s) 41, 44, 47, 128, 194, 564, 799, 1220
Tsp45I GTSAC 1 cut(s) 255
TspDTI ATGAA 4 cut(s) 896, 953, 1029, 1230
TspGWI ACGGA 3 cut(s) 146, 186, 1053
TspRI CASTG 3 cut(s) 654, 1151, 1245
VpaK11BI GGWCC 1 cut(s) 237
VspI ATTAAT 1 cut(s) 837
XapI RAATTY 2 cut(s) 299, 1207
XcmI CCANNNNNNNNNTGG 1 cut(s) 1078
XhoI CTCGAG 1 cut(s) 380
XmiI GTMKAC 1 cut(s) 189
XspI CTAG 4 cut(s) 206, 807, 843, 1170
ZrmI AGTACT 1 cut(s) 947
Zsp2I ATGCAT 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.