Rw5G000430
MYB Family

Trihelix transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0013499
Physical Location & Seq
Reverse (-)
347939 .. 350084
2146 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G000430.1

Sequence Viewer

Length: 1266 bp
ATGGAGGTGTTGACCGGCGACCGGAATATACCAGACCCAGCAGCGGCAGCAGAAGAACAAGTCTTCCCGGCGCACATATCCCCATTCTCTGAGACACACCAAGTTGTCTTCGCCAATCCAACGGCGGCTGCTATGACTATGACGCCGCAGAAGCTCCGTATCAGGTGCAACGGAAGGTCTCCTGCCGTCGACGCAGCACCAACTCTACCAGATGATGCTGATCCGCCCCAACTCGGCTCCGCTGACAACGGCTTGTCACCACATAATGCTGATGAGCATTTTAAAGCACAAGGGGTAGAATTCGTGAATTGGAAGCAGAAGAGGAAGAGAACATCGTCTTGTAGTAGTAGTACAAGAAAAAAGAGCAAAAGGCTTGAAATGCTCGAGCATTTTCTGGAAAGTCTGGTAAACAAAATGATGGAGAAGCAAGAGCAGATGCATAAGCAGTTGATAGAGATGGTACAAGACAGGGAAAAAGAGAGAATAGCCAAAGAAGAAGCCTGGAAACAGCACGAGTTGGAGAGAATCACAAGGGATGAGGAGGTAAGAGCCCAACAGACATCGCGCAGCCTTGCCCTCATTAACTTTGTACAGAGTTTGTTGGGCAGTGATGTTCAAGTTCCCCAACCAGCACCACTCGTAGCACAACCAGTGGCAACAGTACAACCTCCTACTTCCAATCAATATCATGATCAACGTGTGAAAGAAAATAAAAATCTTCACAAAGACACAGCGATTGCCAAGTGTATTGCAACACCAACTGATAGAAGATGGCTCCAATTTGAAATACGGGCACTCATAGCGCTGCGGACTAGTTTGGAACATAAGTTTCGCACCCCAATTAATTCTAGCCATGGATCTCTATGGGAGGAGATAGCTCTTGGGATGAACCGTATGGGCTTTGATCGCTCGGGAAGGAAGTGTAAAGAAAAATGGGAAAACATGAACAAGTACTTCAAAAGGGCAATCACAAATGACAGGAAGCGTCCTACAAATGCTAAGACTTGTCAGTATTTTAATGAATTGGAGTTGCTCTACAAAAACGGACTTCTAAATCTGGGGAATGGCTTTAGTCCCACAAGCAGTATGGGGAATGGCTTTAGTTGCACAAGCAACCAGAAGGAGACCAGGAGTGAAAACGAGTCCCAACAGTGCGTGCTCAGCAACGTTGACACTAGTCTTCTAACTTGTGCCACAATACCATCTGTGTTAAATTCAAATGAAGCTGCCGAAAGAACGAGAGCAGTGGTTTCTCCTGCTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

421

Amino Acids

47.48

Weight (kDa)

8.8

Isoelectric Point (pI)

54.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 256 - 344 4.1e-20 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47660
fragaria_vesca FvH4_3g00330
malus_domestica MD05G1361500.v1.1 MD10G1338800.v1.1
prunus_persica Prupe.4G003900_v2.0.a1
pyrus_communis pycom05g32800 pycom10g28850
rosa_chinensis RchiOBHm_Chr5g0000511
rosa_laevigata RLG00000030873
rosa_multiflora Rmu_co7961544.1_g000001
rosa_roxburghii Rroxscaffold_1G00075670
rosa_rugosa Rorug04G0384300
rosa_samantha Rh5AG004200 Rh5BG005700 Rh5CG004600 Rh5DG004500 Rh5DG004600
rosa_wichuraiana Rw5G000430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 189
AccII CGCG 1 cut(s) 565
AciI CCGC 6 cut(s) 44, 125, 146, 224, 240, 808
AclI AACGTT 1 cut(s) 1167
AclWI GGATC 2 cut(s) 215, 865
AcsI RAATTY 2 cut(s) 299, 1213
AcyI GRCGYC 1 cut(s) 143
AfaI GTAC 5 cut(s) 352, 462, 591, 663, 953
AfeI AGCGCT 1 cut(s) 804
AfiI CCNNNNNNNGG 3 cut(s) 21, 43, 233
AflIII ACRYGT 1 cut(s) 697
AgsI TTSAA 5 cut(s) 377, 617, 785, 958, 1218
AhlI ACTAGT 2 cut(s) 812, 1175
AjnI CCWGG 2 cut(s) 500, 1127
AloI GAACNNNNNNTCC 2 cut(s) 48, 80
AluBI AGCT 3 cut(s) 154, 878, 1226
AluI AGCT 3 cut(s) 154, 878, 1226
Alw21I GWGCWC 1 cut(s) 1161
Alw26I GTCTC 3 cut(s) 86, 183, 1118
AlwI GGATC 2 cut(s) 215, 865
Ama87I CYCGRG 2 cut(s) 383, 910
Aor51HI AGCGCT 1 cut(s) 804
ApeKI GCWGC 7 cut(s) 41, 47, 128, 194, 567, 805, 1226
ApoI RAATTY 2 cut(s) 299, 1213
AseI ATTAAT 1 cut(s) 843
AspLEI GCGC 3 cut(s) 73, 567, 805
AsuC2I CCSGG 1 cut(s) 68
AsuHPI GGTGA 1 cut(s) 249
AvaI CYCGRG 2 cut(s) 383, 910
BaeGI GKGCMC 1 cut(s) 796
BanII GRGCYC 1 cut(s) 553
BauI CACGAG 1 cut(s) 512
BbsI GAAGAC 3 cut(s) 55, 100, 1172
Bbv12I GWGCWC 1 cut(s) 1161
BbvI GCAGC 7 cut(s) 53, 59, 115, 206, 579, 792, 1213
BccI CCATC 4 cut(s) 412, 451, 765, 1210
BceAI ACGGC 3 cut(s) 138, 170, 265
BciT130I CCWGG 2 cut(s) 502, 1129
BclI TGATCA 1 cut(s) 691
BcnI CCSGG 1 cut(s) 68
BcoDI GTCTC 3 cut(s) 86, 183, 1118
BcuI ACTAGT 2 cut(s) 812, 1175
BfaI CTAG 3 cut(s) 813, 849, 1176
BfoI RGCGCY 1 cut(s) 806
BlpI GCTNAGC 1 cut(s) 1160
BmcAI AGTACT 1 cut(s) 953
Bme1390I CCNGG 3 cut(s) 68, 502, 1129
BmeT110I CYCGRG 2 cut(s) 383, 910
BmiI GGNNCC 2 cut(s) 238, 776
BmrFI CCNGG 3 cut(s) 68, 502, 1129
BmsI GCATC 2 cut(s) 205, 426
BoxI GACNNNNGTC 1 cut(s) 1176
BpiI GAAGAC 3 cut(s) 55, 100, 1172
Bpu1102I GCTNAGC 1 cut(s) 1160
BpuMI CCSGG 1 cut(s) 68
BsaBI GATNNNNATC 1 cut(s) 219
BsaHI GRCGYC 1 cut(s) 143
BsaI GGTCTC 2 cut(s) 183, 1118
BsaJI CCNNGG 1 cut(s) 853
BsaWI WCCGGW 1 cut(s) 21
Bsc4I CCNNNNNNNGG 3 cut(s) 21, 43, 233
Bse118I RCCGGY 1 cut(s) 14
Bse1I ACTGG 1 cut(s) 650
Bse8I GATNNNNATC 1 cut(s) 219
BseBI CCWGG 2 cut(s) 502, 1129
BseDI CCNNGG 1 cut(s) 853
BseGI GGATG 2 cut(s) 541, 891
BseJI GATNNNNATC 1 cut(s) 219
BseLI CCNNNNNNNGG 3 cut(s) 21, 43, 233
BseMII CTCAG 2 cut(s) 81, 1174
BseNI ACTGG 1 cut(s) 650
BseRI GAGGAG 2 cut(s) 554, 884
BseSI GKGCMC 1 cut(s) 796
BseXI GCAGC 7 cut(s) 53, 59, 115, 206, 579, 792, 1213
BseYI CCCAGC 1 cut(s) 37
Bsh1236I CGCG 1 cut(s) 565
Bsh1285I CGRYCG 1 cut(s) 22
BsiEI CGRYCG 1 cut(s) 22
BsiHKAI GWGCWC 1 cut(s) 1161
BsiHKCI CYCGRG 2 cut(s) 383, 910
BsiSI CCGG 3 cut(s) 15, 22, 68
BslFI GGGAC 2 cut(s) 1059, 1129
BslI CCNNNNNNNGG 3 cut(s) 21, 43, 233
BsmAI GTCTC 3 cut(s) 86, 183, 1118
BsmFI GGGAC 2 cut(s) 1059, 1129
Bso31I GGTCTC 2 cut(s) 183, 1118
BsoBI CYCGRG 2 cut(s) 383, 910
Bsp1286I GDGCHC 3 cut(s) 553, 796, 1161
Bsp1407I TGTACA 1 cut(s) 589
Bsp143I GATC 4 cut(s) 220, 691, 857, 904
Bsp1720I GCTNAGC 1 cut(s) 1160
Bsp19I CCATGG 1 cut(s) 853
BspACI CCGC 6 cut(s) 44, 125, 146, 224, 240, 808
BspCNI CTCAG 2 cut(s) 82, 1173
BspFNI CGCG 1 cut(s) 565
BspHI TCATGA 1 cut(s) 688
BspLI GGNNCC 2 cut(s) 238, 776
BspPI GGATC 2 cut(s) 215, 865
BspTNI GGTCTC 2 cut(s) 183, 1118
BsrFI RCCGGY 1 cut(s) 14
BsrGI TGTACA 1 cut(s) 589
BsrI ACTGG 1 cut(s) 650
BssAI RCCGGY 1 cut(s) 14
BssECI CCNNGG 1 cut(s) 853
BssMI GATC 4 cut(s) 220, 691, 857, 904
BssNI GRCGYC 1 cut(s) 143
BssSI CACGAG 1 cut(s) 512
BssT1I CCWWGG 1 cut(s) 853
Bst2BI CACGAG 1 cut(s) 512
Bst2UI CCWGG 2 cut(s) 502, 1129
Bst4CI ACNGT 3 cut(s) 661, 893, 1152
Bst6I CTCTTC 2 cut(s) 314, 320
BstACI GRCGYC 1 cut(s) 143
BstAUI TGTACA 1 cut(s) 589
BstC8I GCNNGC 1 cut(s) 1157
BstDEI CTNAG 3 cut(s) 90, 999, 1160
BstDSI CCRYGG 1 cut(s) 853
BstF5I GGATG 2 cut(s) 541, 891
BstFNI CGCG 1 cut(s) 565
BstH2I RGCGCY 1 cut(s) 806
BstHHI GCGC 3 cut(s) 73, 567, 805
BstKTI GATC 4 cut(s) 223, 694, 860, 907
BstMAI GTCTC 3 cut(s) 86, 183, 1118
BstMBI GATC 4 cut(s) 220, 691, 857, 904
BstMCI CGRYCG 1 cut(s) 22
BstMWI GCNNNNNNNGC 8 cut(s) 47, 151, 191, 379, 800, 906, 1104, 1161
BstNI CCWGG 2 cut(s) 502, 1129
BstPAI GACNNNNGTC 1 cut(s) 1176
BstSCI CCNGG 3 cut(s) 66, 500, 1127
BstSLI GKGCMC 1 cut(s) 796
BstUI CGCG 1 cut(s) 565
BstV1I GCAGC 7 cut(s) 53, 59, 115, 206, 579, 792, 1213
BstV2I GAAGAC 3 cut(s) 55, 100, 1172
BstX2I RGATCY 1 cut(s) 857
BstYI RGATCY 1 cut(s) 857
BtgI CCRYGG 1 cut(s) 853
BtgZI GCGATG 1 cut(s) 546
BtsCI GGATG 2 cut(s) 541, 891
BtsI GCAGTG 2 cut(s) 613, 1251
BtsIMutI CAGTG 4 cut(s) 613, 657, 1157, 1251
Cac8I GCNNGC 1 cut(s) 1157
CciI TCATGA 1 cut(s) 688
CfoI GCGC 3 cut(s) 73, 567, 805
Cfr10I RCCGGY 1 cut(s) 14
CseI GACGC 3 cut(s) 151, 200, 974
Csp6I GTAC 5 cut(s) 351, 461, 590, 662, 952
CviAII CATG 3 cut(s) 689, 854, 943
CviQI GTAC 5 cut(s) 351, 461, 590, 662, 952
DdeI CTNAG 3 cut(s) 90, 999, 1160
DpnI GATC 4 cut(s) 222, 693, 859, 906
DpnII GATC 4 cut(s) 220, 691, 857, 904
DraI TTTAAA 1 cut(s) 283
Eam1104I CTCTTC 2 cut(s) 314, 320
EarI CTCTTC 2 cut(s) 314, 320
EciI GGCGGA 1 cut(s) 213
Eco130I CCWWGG 1 cut(s) 853
Eco24I GRGCYC 1 cut(s) 553
Eco31I GGTCTC 2 cut(s) 183, 1118
Eco47III AGCGCT 1 cut(s) 804
Eco88I CYCGRG 2 cut(s) 383, 910
EcoRI GAATTC 1 cut(s) 299
EcoRII CCWGG 2 cut(s) 500, 1127
EcoT14I CCWWGG 1 cut(s) 853
EcoT22I ATGCAT 1 cut(s) 441
EcoT38I GRGCYC 1 cut(s) 553
ErhI CCWWGG 1 cut(s) 853
FaeI CATG 3 cut(s) 692, 857, 946
FaqI GGGAC 2 cut(s) 1059, 1129
FatI CATG 3 cut(s) 688, 853, 942
FbaI TGATCA 1 cut(s) 691
FblI GTMKAC 1 cut(s) 189
FokI GGATG 2 cut(s) 548, 898
FriOI GRGCYC 1 cut(s) 553
FspBI CTAG 3 cut(s) 813, 849, 1176
GlaI GCGC 3 cut(s) 72, 566, 804
GsaI CCCAGC 1 cut(s) 41
HaeII RGCGCY 1 cut(s) 806
HapII CCGG 3 cut(s) 15, 22, 68
HgaI GACGC 3 cut(s) 151, 200, 974
HhaI GCGC 3 cut(s) 73, 567, 805
Hin1I GRCGYC 1 cut(s) 143
Hin1II CATG 3 cut(s) 692, 857, 946
Hin6I GCGC 3 cut(s) 71, 565, 803
HinP1I GCGC 3 cut(s) 71, 565, 803
HincII GTYRAC 3 cut(s) 12, 190, 1171
HindII GTYRAC 3 cut(s) 12, 190, 1171
HinfI GANTC 2 cut(s) 525, 1142
HpaII CCGG 3 cut(s) 15, 22, 68
HphI GGTGA 1 cut(s) 249
Hpy166II GTNNAC 4 cut(s) 12, 190, 409, 1171
Hpy188I TCNGA 1 cut(s) 91
Hpy188III TCNNGA 4 cut(s) 304, 395, 689, 912
Hpy8I GTNNAC 4 cut(s) 12, 190, 409, 1171
Hpy99I CGWCG 2 cut(s) 191, 194
HpyAV CCTTC 3 cut(s) 168, 909, 1114
HpyCH4III ACNGT 3 cut(s) 661, 893, 1152
HpyCH4IV ACGT 2 cut(s) 697, 1167
HpyCH4V TGCA 4 cut(s) 168, 439, 752, 1107
HpyF10VI GCNNNNNNNGC 8 cut(s) 47, 151, 191, 379, 800, 906, 1104, 1161
HpyF3I CTNAG 3 cut(s) 90, 999, 1160
HpySE526I ACGT 2 cut(s) 697, 1167
Hsp92I GRCGYC 1 cut(s) 143
Hsp92II CATG 3 cut(s) 692, 857, 946
HspAI GCGC 3 cut(s) 71, 565, 803
Ksp22I TGATCA 1 cut(s) 691
Kzo9I GATC 4 cut(s) 220, 691, 857, 904
LmnI GCTCC 3 cut(s) 159, 242, 780
Lsp1109I GCAGC 7 cut(s) 53, 59, 115, 206, 579, 792, 1213
LweI GCATC 2 cut(s) 205, 426
MaeI CTAG 3 cut(s) 813, 849, 1176
MaeII ACGT 2 cut(s) 697, 1167
MaeIII GTNAC 1 cut(s) 255
MalI GATC 4 cut(s) 222, 693, 859, 906
MboI GATC 4 cut(s) 220, 691, 857, 904
MboII GAAGA 9 cut(s) 55, 65, 100, 331, 337, 506, 710, 780, 1172
MflI RGATCY 1 cut(s) 857
MhlI GDGCHC 3 cut(s) 553, 796, 1161
MluCI AATT 7 cut(s) 299, 307, 779, 840, 844, 1022, 1213
MlyI GAGTC 1 cut(s) 1151
MmeI TCCRAC 2 cut(s) 143, 498
MnlI CCTC 6 cut(s) 315, 532, 535, 587, 678, 862
Mph1103I ATGCAT 1 cut(s) 441
MseI TTAA 6 cut(s) 282, 582, 843, 1017, 1211, 1264
MspA1I CMGCKG 2 cut(s) 44, 242
MspI CCGG 3 cut(s) 15, 22, 68
MspR9I CCNGG 3 cut(s) 68, 502, 1129
MvaI CCWGG 2 cut(s) 502, 1129
MvnI CGCG 1 cut(s) 565
MwoI GCNNNNNNNGC 8 cut(s) 47, 151, 191, 379, 800, 906, 1104, 1161
NciI CCSGG 1 cut(s) 68
NcoI CCATGG 1 cut(s) 853
NdeII GATC 4 cut(s) 220, 691, 857, 904
NlaIII CATG 3 cut(s) 692, 857, 946
NlaIV GGNNCC 2 cut(s) 238, 776
NmeAIII GCCGAG 1 cut(s) 213
NmuCI GTSAC 1 cut(s) 255
NsiI ATGCAT 1 cut(s) 441
PaeR7I CTCGAG 1 cut(s) 383
PagI TCATGA 1 cut(s) 688
PfeI GAWTC 1 cut(s) 525
PleI GAGTC 1 cut(s) 1150
PpsI GAGTC 1 cut(s) 1150
PshAI GACNNNNGTC 1 cut(s) 1176
PshBI ATTAAT 1 cut(s) 843
Psp1406I AACGTT 1 cut(s) 1167
Psp6I CCWGG 2 cut(s) 500, 1127
PspFI CCCAGC 1 cut(s) 37
PspGI CCWGG 2 cut(s) 500, 1127
PspN4I GGNNCC 2 cut(s) 238, 776
PspXI VCTCGAGB 1 cut(s) 383
PsuI RGATCY 1 cut(s) 857
RsaI GTAC 5 cut(s) 352, 462, 591, 663, 953
RsaNI GTAC 5 cut(s) 351, 461, 590, 662, 952
SalI GTCGAC 1 cut(s) 188
SaqAI TTAA 6 cut(s) 282, 582, 843, 1017, 1211, 1264
Sau3AI GATC 4 cut(s) 220, 691, 857, 904
ScaI AGTACT 1 cut(s) 953
SchI GAGTC 1 cut(s) 1151
ScrFI CCNGG 3 cut(s) 68, 502, 1129
SduI GDGCHC 3 cut(s) 553, 796, 1161
SfaNI GCATC 2 cut(s) 205, 426
Sfr274I CTCGAG 1 cut(s) 383
SgrDI CGTCGACG 1 cut(s) 188
SlaI CTCGAG 1 cut(s) 383
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
SpeI ACTAGT 2 cut(s) 812, 1175
Sse9I AATT 7 cut(s) 299, 307, 779, 840, 844, 1022, 1213
SsiI CCGC 6 cut(s) 44, 125, 146, 224, 240, 808
SspMI CTAG 3 cut(s) 813, 849, 1176
StyD4I CCNGG 3 cut(s) 66, 500, 1127
StyI CCWWGG 1 cut(s) 853
TaaI ACNGT 3 cut(s) 661, 893, 1152
TaiI ACGT 2 cut(s) 700, 1170
TaqI TCGA 2 cut(s) 189, 384
TasI AATT 7 cut(s) 299, 307, 779, 840, 844, 1022, 1213
TatI WGTACW 4 cut(s) 350, 589, 661, 951
TauI GCSGC 3 cut(s) 47, 128, 148
TfiI GAWTC 1 cut(s) 525
Tru1I TTAA 6 cut(s) 282, 582, 843, 1017, 1211, 1264
Tru9I TTAA 6 cut(s) 282, 582, 843, 1017, 1211, 1264
TscAI CASTG 4 cut(s) 613, 657, 1157, 1251
TseFI GTSAC 1 cut(s) 255
TseI GCWGC 7 cut(s) 41, 47, 128, 194, 567, 805, 1226
Tsp45I GTSAC 1 cut(s) 255
TspDTI ATGAA 4 cut(s) 902, 959, 1035, 1236
TspGWI ACGGA 3 cut(s) 146, 186, 1059
TspRI CASTG 4 cut(s) 613, 657, 1157, 1251
VspI ATTAAT 1 cut(s) 843
XapI RAATTY 2 cut(s) 299, 1213
XcmI CCANNNNNNNNNTGG 1 cut(s) 1084
XhoI CTCGAG 1 cut(s) 383
XmiI GTMKAC 1 cut(s) 189
XspI CTAG 3 cut(s) 813, 849, 1176
ZrmI AGTACT 1 cut(s) 953
Zsp2I ATGCAT 1 cut(s) 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.