Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009316

Physical Location & Seq

Genomic Coordinates Forward (+)

19559201 .. 19561374

Gene Structure 2174 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G48240.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGTCTACCGGAGAAGAAGGTCACATGGCGATGGCAGATAGAGGCTCTAGAAAGAGAAGAGTCGGCGTTAAGAAAGGTACTAAAGCGGCGAGGAACAAAAAGCAAAAATCAAAACCTTCTACTTCCGATAGGTTTAAGGTTACAATGAAGAATCAAAAGCTATTTCAGAAGAGAGCACGAGATTACAATTCCGATGACGATGAAGAAGAAGATGATGAATCGAAGAAACAACCAGAAGTAACAATTCGTGAGAAGATCTTCTCTGATGCTAACATGGGACCAAATTACGAAGAGATTGGAGAAGAAGATAATGATGAGAATTCAGATGGTGAAGATCATGGAGAGATTGAATCTGGAATCACTAAGTTTGCTACTGATGGATGTAATGCTTTCAAAATCGCTTTTAAAGCTATTATGAAGAAGACTAAAGGAGATGATACATTGGGCCCAGTTTTATCAGCACATAAGCATCTTATTGGAGAGAAGCTAGCTGAAGATGAAGCTGAAAAGAAAGCTAAAGGTCAAGCTAGAAAGGCTAAACATTTGATTGCTGAGAAGGGACATGTTAAACCTGGAAGTTATTTGGATTCTCATGAAAAGATTCTTATTGGTGTTGCTACTAAAGGAGTGGTCAAGCTTTTCAATGCTGTCAACAAGGCTCAACATGCTCAGAAGGGTTTGAATCCTTCAAGGTCTAAAGACGCTAAAGTGCTGAAGAAGCGAAGAAAAGAAGCATTCTTGTCTGAGTTAGGGAAAACAAAAACAGACACCAAGGCTCACAAATCTGAAGACGAAGCTCCTGTTTGGGCTCCTCTACGAGATAATTACATGTTAGCAAACCCAAAACTGAAGGACTGGGACAAGAAACAGGAAACAAGCGAGGGAGATGATTTTGCCGGTTTGTCAGGAGATGAAAGTTATGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rrp15p

Protein Analysis

309

Amino Acids

34.48

Weight (kDa)

8.73

Isoelectric Point (pI)

36.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rrp15p	PF07890	131 - 250	2.5e-22	Rrp15p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48240 AT5G48240 AT5G48240
fragaria_vesca	FvH4_6g40390 FvH4_6g40390
malus_domestica	MD09G1131700.v1.1 MD17G1119200.v1.1
prunus_persica	Prupe.3G194600_v2.0.a1 Prupe.3G194600_v2.0.a1 Prupe.3G194600_v2.0.a1
pyrus_communis	pycom09g05370 pycom17g10990
rosa_chinensis	RchiOBHm_Chr2g0155591
rosa_laevigata	RLG00000020848
rosa_multiflora	Rmu_sc0003971.1_g000004
rosa_roxburghii	Rroxscaffold_2G00093630
rosa_rugosa	Rorug02G0448400
rosa_samantha	Rh2AG514600 Rh2BG525400 Rh2CG499500 Rh2DG534300
rosa_wichuraiana	Rw2G042280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	1 cut(s)	86
AcsI	RAATTY	1 cut(s)	319
AcuI	CTGAAG	4 cut(s)	513, 734, 807, 869
AfaI	GTAC	1 cut(s)	79
AflIII	ACRYGT	2 cut(s)	562, 828
AgsI	TTSAA	5 cut(s)	350, 394, 643, 682, 690
AjnI	CCWGG	1 cut(s)	571
AluBI	AGCT	9 cut(s)	160, 410, 487, 491, 503, 515, 527, 637, 797
AluI	AGCT	9 cut(s)	160, 410, 487, 491, 503, 515, 527, 637, 797
Alw21I	GWGCWC	1 cut(s)	178
AoxI	GGCC	1 cut(s)	445
ApaI	GGGCCC	1 cut(s)	449
ApoI	RAATTY	1 cut(s)	319
Asp700I	GAANNNNTTC	2 cut(s)	257, 600
AspS9I	GGNCC	3 cut(s)	278, 445, 446
AsuHPI	GGTGA	1 cut(s)	341
AsuNHI	GCTAGC	1 cut(s)	487
AvaII	GGWCC	1 cut(s)	278
BaeGI	GKGCMC	1 cut(s)	449
BanII	GRGCYC	2 cut(s)	449, 811
BauI	CACGAG	1 cut(s)	177
BbsI	GAAGAC	2 cut(s)	428, 795
Bbv12I	GWGCWC	1 cut(s)	178
BccI	CCATC	3 cut(s)	25, 320, 371
BciT130I	CCWGG	1 cut(s)	573
BfaI	CTAG	3 cut(s)	48, 488, 528
BglII	AGATCT	1 cut(s)	255
BisI	GCNGC	1 cut(s)	87
BlsI	GCNGC	1 cut(s)	88
Bme1390I	CCNGG	1 cut(s)	573
Bme18I	GGWCC	1 cut(s)	278
BmgT120I	GGNCC	3 cut(s)	278, 445, 446
BmiI	GGNNCC	3 cut(s)	279, 447, 810
BmrFI	CCNGG	1 cut(s)	573
BmrI	ACTGGG	2 cut(s)	443, 865
BmsI	GCATC	2 cut(s)	256, 478
BmtI	GCTAGC	1 cut(s)	491
BmuI	ACTGGG	2 cut(s)	443, 865
BpiI	GAAGAC	2 cut(s)	428, 795
BsaJI	CCNNGG	1 cut(s)	771
BsaWI	WCCGGW	1 cut(s)	8
Bse118I	RCCGGY	1 cut(s)	896
Bse1I	ACTGG	2 cut(s)	449, 860
BseBI	CCWGG	1 cut(s)	573
BseDI	CCNNGG	1 cut(s)	771
BseGI	GGATG	1 cut(s)	386
BseMII	CTCAG	3 cut(s)	543, 683, 735
BseNI	ACTGG	2 cut(s)	449, 860
BseRI	GAGGAG	1 cut(s)	801
BseSI	GKGCMC	1 cut(s)	449
BshFI	GGCC	1 cut(s)	447
BsiHKAI	GWGCWC	1 cut(s)	178
BsiSI	CCGG	2 cut(s)	9, 897
BslFI	GGGAC	3 cut(s)	291, 573, 872
BsmFI	GGGAC	3 cut(s)	291, 573, 872
BsmI	GAATGC	1 cut(s)	734
BsnI	GGCC	1 cut(s)	447
Bsp120I	GGGCCC	1 cut(s)	445
Bsp1286I	GDGCHC	3 cut(s)	178, 449, 811
Bsp143I	GATC	2 cut(s)	255, 334
BspACI	CCGC	1 cut(s)	86
BspANI	GGCC	1 cut(s)	447
BspCNI	CTCAG	3 cut(s)	544, 682, 736
BspHI	TCATGA	1 cut(s)	592
BspLI	GGNNCC	3 cut(s)	279, 447, 810
BspOI	GCTAGC	1 cut(s)	491
BsrFI	RCCGGY	1 cut(s)	896
BsrI	ACTGG	2 cut(s)	449, 860
BssAI	RCCGGY	1 cut(s)	896
BssECI	CCNNGG	1 cut(s)	771
BssMI	GATC	2 cut(s)	255, 334
BssSI	CACGAG	1 cut(s)	177
BssT1I	CCWWGG	1 cut(s)	771
Bst2BI	CACGAG	1 cut(s)	177
Bst2UI	CCWGG	1 cut(s)	573
Bst6I	CTCTTC	3 cut(s)	52, 164, 285
BstC8I	GCNNGC	1 cut(s)	489
BstDEI	CTNAG	4 cut(s)	363, 552, 669, 744
BstF5I	GGATG	1 cut(s)	386
BstKTI	GATC	2 cut(s)	258, 337
BstMBI	GATC	2 cut(s)	255, 334
BstMWI	GCNNNNNNNGC	4 cut(s)	407, 533, 665, 718
BstNI	CCWGG	1 cut(s)	573
BstNSI	RCATGY	3 cut(s)	566, 668, 832
BstSCI	CCNGG	1 cut(s)	571
BstSLI	GKGCMC	1 cut(s)	449
BstV2I	GAAGAC	2 cut(s)	428, 795
BstX2I	RGATCY	1 cut(s)	255
BstYI	RGATCY	1 cut(s)	255
BsuRI	GGCC	1 cut(s)	447
BtgZI	GCGATG	1 cut(s)	44
BtsCI	GGATG	1 cut(s)	386
Cac8I	GCNNGC	1 cut(s)	489
CciI	TCATGA	1 cut(s)	592
Cfr10I	RCCGGY	1 cut(s)	896
Cfr13I	GGNCC	3 cut(s)	278, 445, 446
CseI	GACGC	1 cut(s)	710
Csp6I	GTAC	1 cut(s)	78
CviAII	CATG	7 cut(s)	25, 274, 338, 563, 593, 665, 829
CviQI	GTAC	1 cut(s)	78
DdeI	CTNAG	4 cut(s)	363, 552, 669, 744
DpnI	GATC	2 cut(s)	257, 336
DpnII	GATC	2 cut(s)	255, 334
DraI	TTTAAA	1 cut(s)	406
Eam1104I	CTCTTC	3 cut(s)	52, 164, 285
EarI	CTCTTC	3 cut(s)	52, 164, 285
Eco130I	CCWWGG	1 cut(s)	771
Eco24I	GRGCYC	2 cut(s)	449, 811
Eco47I	GGWCC	1 cut(s)	278
Eco57I	CTGAAG	4 cut(s)	513, 734, 807, 869
EcoRI	GAATTC	1 cut(s)	319
EcoRII	CCWGG	1 cut(s)	571
EcoT14I	CCWWGG	1 cut(s)	771
EcoT38I	GRGCYC	2 cut(s)	449, 811
ErhI	CCWWGG	1 cut(s)	771
FaeI	CATG	7 cut(s)	28, 277, 341, 566, 596, 668, 832
FaqI	GGGAC	3 cut(s)	291, 573, 872
FatI	CATG	7 cut(s)	24, 273, 337, 562, 592, 664, 828
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	1 cut(s)	87
FokI	GGATG	1 cut(s)	393
FriOI	GRGCYC	2 cut(s)	449, 811
Fsp4HI	GCNGC	1 cut(s)	87
FspBI	CTAG	3 cut(s)	48, 488, 528
GluI	GCNGC	1 cut(s)	87
HaeIII	GGCC	1 cut(s)	447
HapII	CCGG	2 cut(s)	9, 897
HgaI	GACGC	1 cut(s)	710
Hin1II	CATG	7 cut(s)	28, 277, 341, 566, 596, 668, 832
HincII	GTYRAC	1 cut(s)	652
HindII	GTYRAC	1 cut(s)	652
HindIII	AAGCTT	1 cut(s)	635
HinfI	GANTC	8 cut(s)	60, 151, 218, 350, 357, 587, 601, 682
HpaII	CCGG	2 cut(s)	9, 897
HphI	GGTGA	1 cut(s)	341
Hpy166II	GTNNAC	2 cut(s)	6, 652
Hpy188I	TCNGA	8 cut(s)	127, 168, 193, 265, 325, 672, 745, 787
Hpy188III	TCNNGA	5 cut(s)	48, 248, 354, 593, 906
Hpy8I	GTNNAC	2 cut(s)	6, 652
HpyAV	CCTTC	6 cut(s)	11, 126, 550, 667, 696, 844
HpyF10VI	GCNNNNNNNGC	4 cut(s)	407, 533, 665, 718
HpyF3I	CTNAG	4 cut(s)	363, 552, 669, 744
Hsp92II	CATG	7 cut(s)	28, 277, 341, 566, 596, 668, 832
Kzo9I	GATC	2 cut(s)	255, 334
LmnI	GCTCC	2 cut(s)	802, 814
LweI	GCATC	2 cut(s)	256, 478
MaeI	CTAG	3 cut(s)	48, 488, 528
MaeIII	GTNAC	3 cut(s)	20, 139, 238
MalI	GATC	2 cut(s)	257, 336
MboI	GATC	2 cut(s)	255, 334
MflI	RGATCY	1 cut(s)	255
MhlI	GDGCHC	3 cut(s)	178, 449, 811
MluCI	AATT	5 cut(s)	187, 243, 283, 319, 823
MlyI	GAGTC	1 cut(s)	69
MnlI	CCTC	4 cut(s)	35, 84, 822, 874
MroXI	GAANNNNTTC	2 cut(s)	257, 600
MseI	TTAA	4 cut(s)	69, 135, 405, 567
MslI	CAYNNNNRTG	1 cut(s)	29
MspI	CCGG	2 cut(s)	9, 897
MspR9I	CCNGG	1 cut(s)	573
Mva1269I	GAATGC	1 cut(s)	734
MvaI	CCWGG	1 cut(s)	573
MwoI	GCNNNNNNNGC	4 cut(s)	407, 533, 665, 718
NdeII	GATC	2 cut(s)	255, 334
NheI	GCTAGC	1 cut(s)	487
NlaIII	CATG	7 cut(s)	28, 277, 341, 566, 596, 668, 832
NlaIV	GGNNCC	3 cut(s)	279, 447, 810
NmuCI	GTSAC	1 cut(s)	20
NspI	RCATGY	3 cut(s)	566, 668, 832
PagI	TCATGA	1 cut(s)	592
PciI	ACATGT	2 cut(s)	562, 828
PctI	GAATGC	1 cut(s)	734
PdmI	GAANNNNTTC	2 cut(s)	257, 600
PfeI	GAWTC	7 cut(s)	151, 218, 350, 357, 587, 601, 682
PkrI	GCNGC	1 cut(s)	88
PleI	GAGTC	1 cut(s)	68
PpsI	GAGTC	1 cut(s)	68
PscI	ACATGT	2 cut(s)	562, 828
Psp6I	CCWGG	1 cut(s)	571
PspGI	CCWGG	1 cut(s)	571
PspN4I	GGNNCC	3 cut(s)	279, 447, 810
PspOMI	GGGCCC	1 cut(s)	445
PspPI	GGNCC	3 cut(s)	278, 445, 446
PsuI	RGATCY	1 cut(s)	255
RsaI	GTAC	1 cut(s)	79
RsaNI	GTAC	1 cut(s)	78
RseI	CAYNNNNRTG	1 cut(s)	29
SaqAI	TTAA	4 cut(s)	69, 135, 405, 567
SatI	GCNGC	1 cut(s)	87
Sau3AI	GATC	2 cut(s)	255, 334
Sau96I	GGNCC	3 cut(s)	278, 445, 446
SchI	GAGTC	1 cut(s)	69
ScrFI	CCNGG	1 cut(s)	573
SduI	GDGCHC	3 cut(s)	178, 449, 811
SfaNI	GCATC	2 cut(s)	256, 478
SinI	GGWCC	1 cut(s)	278
SmiMI	CAYNNNNRTG	1 cut(s)	29
Sse9I	AATT	5 cut(s)	187, 243, 283, 319, 823
SsiI	CCGC	1 cut(s)	86
SspMI	CTAG	3 cut(s)	48, 488, 528
StyD4I	CCNGG	1 cut(s)	571
StyI	CCWWGG	1 cut(s)	771
TaqI	TCGA	1 cut(s)	221
TasI	AATT	5 cut(s)	187, 243, 283, 319, 823
TauI	GCSGC	1 cut(s)	89
TfiI	GAWTC	7 cut(s)	151, 218, 350, 357, 587, 601, 682
Tru1I	TTAA	4 cut(s)	69, 135, 405, 567
Tru9I	TTAA	4 cut(s)	69, 135, 405, 567
TseFI	GTSAC	1 cut(s)	20
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	7 cut(s)	161, 216, 231, 431, 513, 609, 927
VpaK11BI	GGWCC	1 cut(s)	278
XapI	RAATTY	1 cut(s)	319
XbaI	TCTAGA	1 cut(s)	47
XceI	RCATGY	3 cut(s)	566, 668, 832
XmiI	GTMKAC	1 cut(s)	5
XmnI	GAANNNNTTC	2 cut(s)	257, 600
XspI	CTAG	3 cut(s)	48, 488, 528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.