Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0009316

Physical Location & Seq

Genomic Coordinates Forward (+)

3995346 .. 3997816

Gene Structure 2471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g05370.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGCCGAAGAAAACCATCTTCCAGAAGAAGCAGCAGAGCCGAGGAAGCGGAAAATAGGGAAGAAGAAGGGCTCCAAGGCAAAGAAGAGGGCGAAGATGTTACATTCGTCGGAGGAAATCAGAGCCATGAAGCCGAAGAAGATTAACAAGAAAATGAAGAAACTGTTTCTTAAACGAGCCCGGGAGTACGATTCGGAGGAGGAGGAGGAGTCCAAACAGGAACATGTGAAACCGAAACCGCATCCGCAACCGTTGGGAAACAATGAGGAGGAGCCGAGTGGCGGTGGTGGGTCGTCTTCAGGGGAAGAGGCGGAGGAGGGTGTTGGTGGCCGCAATAGGGATGATGGCTTTTCGGATGACGAGGAGCACGGCGAGATTCTGCCCGGAATCATGAAGTTTTCGGAGGGTTGCAAGGCGTTTAGGTTGGCATTCAGGAGTATAATCAAGAAGTCTGTTTCTCAGGATGCAGTGGGACCCGTGATGTCGGCGCACAAGAAGCTTGTTGCAGAAAAGCTTGCCGAGGAGCAGACCGAGCGCAAGGCAAAGGGCGAGGCTAAGAAGGAAAAGCACACGGTGATAGAAAAGGGGCATGTGATGCCGGCCAACTATTTAGACACACACGAAAAGTTTCTAATCGGTGTTGCTACTAAAGGAGTGGTGAAGTTGTTCAATGCTGTCAACAAGGCACAAAATGCTCAGAAAGGATTGAATCCTTCCAAGTTTAAAGATGCCAAAGTGATAAAAAAGCGGAGGAAAGAAGCATTCTTTTCCGAGTTGGGCAAAACATCTTTGAAGGCTCACACGTCTAAAGGCGCAGTGGATGGTGAAGGGCCTGCCTGGGCACCATTAAGAGATAATTACATGCTCACAAATCCCAAATTGAAAGACTGGGATAAGATGCCGACCGTTGCGGAAGATGACATTGGAAGGGTGGCTGGAGATAGTTCCGATGATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rrp15p

Protein Analysis

320

Amino Acids

35.41

Weight (kDa)

9.27

Isoelectric Point (pI)

53.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48240 AT5G48240 AT5G48240
fragaria_vesca	FvH4_6g40390 FvH4_6g40390
malus_domestica	MD09G1131700.v1.1 MD17G1119200.v1.1
prunus_persica	Prupe.3G194600_v2.0.a1 Prupe.3G194600_v2.0.a1 Prupe.3G194600_v2.0.a1
pyrus_communis	pycom09g05370 pycom17g10990
rosa_chinensis	RchiOBHm_Chr2g0155591
rosa_laevigata	RLG00000020848
rosa_multiflora	Rmu_sc0003971.1_g000004
rosa_roxburghii	Rroxscaffold_2G00093630
rosa_rugosa	Rorug02G0448400
rosa_samantha	Rh2AG514600 Rh2BG525400 Rh2CG499500 Rh2DG534300
rosa_wichuraiana	Rw2G042280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	841
AciI	CCGC	8 cut(s)	49, 239, 245, 282, 311, 331, 748, 911
AcoI	YGGCCR	3 cut(s)	3, 328, 600
AcuI	CTGAAG	1 cut(s)	282
AdeI	CACNNNGTG	1 cut(s)	574
AfaI	GTAC	1 cut(s)	188
AfiI	CCNNNNNNNGG	2 cut(s)	281, 337
AflIII	ACRYGT	2 cut(s)	223, 801
AgsI	TTSAA	4 cut(s)	670, 709, 793, 883
AjiI	CACGTC	1 cut(s)	804
AjnI	CCWGG	1 cut(s)	836
AjuI	GAANNNNNNNTTGG	2 cut(s)	906, 938
AluBI	AGCT	2 cut(s)	499, 514
AluI	AGCT	2 cut(s)	499, 514
Alw21I	GWGCWC	1 cut(s)	369
Ama87I	CYCGRG	1 cut(s)	180
AoxI	GGCC	4 cut(s)	3, 328, 600, 830
ApeKI	GCWGC	1 cut(s)	32
Asp700I	GAANNNNTTC	2 cut(s)	627, 665
AspLEI	GCGC	3 cut(s)	490, 537, 815
AspS9I	GGNCC	2 cut(s)	473, 830
AsuC2I	CCSGG	3 cut(s)	181, 182, 384
AsuHPI	GGTGA	3 cut(s)	586, 670, 836
AvaI	CYCGRG	1 cut(s)	180
AvaII	GGWCC	1 cut(s)	473
BaeGI	GKGCMC	1 cut(s)	844
BanI	GGYRCC	1 cut(s)	841
BanII	GRGCYC	2 cut(s)	74, 181
BbsI	GAAGAC	1 cut(s)	288
Bbv12I	GWGCWC	1 cut(s)	369
BbvI	GCAGC	1 cut(s)	44
BccI	CCATC	3 cut(s)	24, 338, 815
BceAI	ACGGC	1 cut(s)	385
BciT130I	CCWGG	1 cut(s)	838
BcnI	CCSGG	3 cut(s)	181, 182, 384
BisI	GCNGC	2 cut(s)	33, 331
BlsI	GCNGC	2 cut(s)	34, 332
Bme1390I	CCNGG	4 cut(s)	181, 182, 384, 838
Bme18I	GGWCC	1 cut(s)	473
BmeT110I	CYCGRG	1 cut(s)	180
BmgBI	CACGTC	1 cut(s)	804
BmgT120I	GGNCC	2 cut(s)	473, 830
BmiI	GGNNCC	5 cut(s)	73, 273, 474, 475, 843
BmrFI	CCNGG	4 cut(s)	181, 182, 384, 838
BmrI	ACTGGG	1 cut(s)	898
BmsI	GCATC	5 cut(s)	250, 454, 585, 718, 888
BmuI	ACTGGG	1 cut(s)	898
BpiI	GAAGAC	1 cut(s)	288
BpmI	CTGGAG	1 cut(s)	957
BpuMI	CCSGG	3 cut(s)	181, 182, 384
BsaJI	CCNNGG	5 cut(s)	41, 75, 180, 519, 837
BsaXI	ACNNNNNCTCC	2 cut(s)	194, 224
Bsc4I	CCNNNNNNNGG	2 cut(s)	281, 337
Bse118I	RCCGGY	1 cut(s)	598
Bse1I	ACTGG	1 cut(s)	893
BseBI	CCWGG	1 cut(s)	838
BseDI	CCNNGG	5 cut(s)	41, 75, 180, 519, 837
BseGI	GGATG	5 cut(s)	241, 346, 361, 469, 826
BseLI	CCNNNNNNNGG	2 cut(s)	281, 337
BseMII	CTCAG	2 cut(s)	473, 710
BseNI	ACTGG	1 cut(s)	893
BseRI	GAGGAG	9 cut(s)	212, 215, 218, 221, 281, 284, 329, 377, 536
BseSI	GKGCMC	1 cut(s)	844
BseXI	GCAGC	1 cut(s)	44
Bsh1285I	CGRYCG	1 cut(s)	906
BshFI	GGCC	4 cut(s)	5, 330, 602, 832
BshNI	GGYRCC	1 cut(s)	841
BsiEI	CGRYCG	1 cut(s)	906
BsiHKAI	GWGCWC	1 cut(s)	369
BsiHKCI	CYCGRG	1 cut(s)	180
BsiSI	CCGG	3 cut(s)	181, 384, 599
BslFI	GGGAC	1 cut(s)	486
BslI	CCNNNNNNNGG	2 cut(s)	281, 337
BsmFI	GGGAC	1 cut(s)	486
BsmI	GAATGC	2 cut(s)	428, 761
BsnI	GGCC	4 cut(s)	5, 330, 602, 832
BsoBI	CYCGRG	1 cut(s)	180
Bsp1286I	GDGCHC	4 cut(s)	74, 181, 369, 844
BspACI	CCGC	8 cut(s)	49, 239, 245, 282, 311, 331, 748, 911
BspANI	GGCC	4 cut(s)	5, 330, 602, 832
BspCNI	CTCAG	2 cut(s)	472, 709
BspHI	TCATGA	1 cut(s)	390
BspLI	GGNNCC	5 cut(s)	73, 273, 474, 475, 843
BspT107I	GGYRCC	1 cut(s)	841
BsrFI	RCCGGY	1 cut(s)	598
BsrI	ACTGG	1 cut(s)	893
BssAI	RCCGGY	1 cut(s)	598
BssECI	CCNNGG	5 cut(s)	41, 75, 180, 519, 837
BssT1I	CCWWGG	1 cut(s)	75
Bst2UI	CCWGG	1 cut(s)	838
Bst4CI	ACNGT	4 cut(s)	165, 252, 574, 907
Bst6I	CTCTTC	2 cut(s)	80, 300
BstAPI	GCANNNNNTGC	2 cut(s)	595, 692
BstC8I	GCNNGC	3 cut(s)	516, 600, 834
BstDEI	CTNAG	3 cut(s)	459, 555, 696
BstF5I	GGATG	5 cut(s)	241, 346, 361, 469, 826
BstHHI	GCGC	3 cut(s)	490, 537, 815
BstMCI	CGRYCG	1 cut(s)	906
BstMWI	GCNNNNNNNGC	5 cut(s)	46, 496, 532, 595, 692
BstNI	CCWGG	1 cut(s)	838
BstNSI	RCATGY	3 cut(s)	227, 593, 865
BstSCI	CCNGG	4 cut(s)	179, 180, 382, 836
BstSLI	GKGCMC	1 cut(s)	844
BstV1I	GCAGC	1 cut(s)	44
BstV2I	GAAGAC	1 cut(s)	288
BsuRI	GGCC	4 cut(s)	5, 330, 602, 832
BtrI	CACGTC	1 cut(s)	804
BtsCI	GGATG	5 cut(s)	241, 346, 361, 469, 826
BtsI	GCAGTG	2 cut(s)	474, 822
BtsIMutI	CAGTG	2 cut(s)	474, 822
Cac8I	GCNNGC	3 cut(s)	516, 600, 834
CciI	TCATGA	1 cut(s)	390
CfoI	GCGC	3 cut(s)	490, 537, 815
Cfr10I	RCCGGY	1 cut(s)	598
Cfr13I	GGNCC	2 cut(s)	473, 830
Cfr9I	CCCGGG	1 cut(s)	180
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	5 cut(s)	127, 224, 391, 590, 862
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	3 cut(s)	459, 555, 696
DraI	TTTAAA	1 cut(s)	724
DraIII	CACNNNGTG	1 cut(s)	574
EaeI	YGGCCR	3 cut(s)	3, 328, 600
Eam1104I	CTCTTC	2 cut(s)	80, 300
EarI	CTCTTC	2 cut(s)	80, 300
EciI	GGCGGA	1 cut(s)	326
Eco130I	CCWWGG	1 cut(s)	75
Eco24I	GRGCYC	2 cut(s)	74, 181
Eco47I	GGWCC	1 cut(s)	473
Eco57I	CTGAAG	1 cut(s)	282
Eco88I	CYCGRG	1 cut(s)	180
EcoO109I	RGGNCCY	2 cut(s)	473, 830
EcoRII	CCWGG	1 cut(s)	836
EcoT14I	CCWWGG	1 cut(s)	75
EcoT38I	GRGCYC	2 cut(s)	74, 181
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	5 cut(s)	130, 227, 394, 593, 865
FaiI	YATR	6 cut(s)	128, 225, 392, 440, 591, 863
FaqI	GGGAC	1 cut(s)	486
FatI	CATG	5 cut(s)	126, 223, 390, 589, 861
Fnu4HI	GCNGC	2 cut(s)	33, 331
FokI	GGATG	5 cut(s)	228, 353, 368, 476, 833
FriOI	GRGCYC	2 cut(s)	74, 181
Fsp4HI	GCNGC	2 cut(s)	33, 331
GlaI	GCGC	3 cut(s)	489, 536, 814
GluI	GCNGC	2 cut(s)	33, 331
GsuI	CTGGAG	1 cut(s)	957
HaeIII	GGCC	4 cut(s)	5, 330, 602, 832
HapII	CCGG	3 cut(s)	181, 384, 599
HhaI	GCGC	3 cut(s)	490, 537, 815
Hin1II	CATG	5 cut(s)	130, 227, 394, 593, 865
Hin6I	GCGC	3 cut(s)	488, 535, 813
HinP1I	GCGC	3 cut(s)	488, 535, 813
HincII	GTYRAC	1 cut(s)	679
HindII	GTYRAC	1 cut(s)	679
HindIII	AAGCTT	2 cut(s)	497, 512
HinfI	GANTC	5 cut(s)	191, 209, 376, 387, 709
HpaII	CCGG	3 cut(s)	181, 384, 599
HphI	GGTGA	3 cut(s)	586, 670, 836
Hpy166II	GTNNAC	1 cut(s)	679
Hpy188I	TCNGA	8 cut(s)	112, 122, 196, 355, 403, 699, 772, 949
Hpy188III	TCNNGA	5 cut(s)	23, 391, 433, 445, 461
Hpy8I	GTNNAC	1 cut(s)	679
Hpy99I	CGWCG	1 cut(s)	112
HpyAV	CCTTC	6 cut(s)	61, 553, 723, 787, 821, 921
HpyCH4III	ACNGT	4 cut(s)	165, 252, 574, 907
HpyCH4IV	ACGT	1 cut(s)	803
HpyCH4V	TGCA	3 cut(s)	411, 467, 506
HpyF10VI	GCNNNNNNNGC	5 cut(s)	46, 496, 532, 595, 692
HpyF3I	CTNAG	3 cut(s)	459, 555, 696
HpySE526I	ACGT	1 cut(s)	803
Hsp92II	CATG	5 cut(s)	130, 227, 394, 593, 865
HspAI	GCGC	3 cut(s)	488, 535, 813
KflI	GGGWCCC	1 cut(s)	473
KroI	GCCGGC	1 cut(s)	598
KroNI	GCCGGC	1 cut(s)	600
LmnI	GCTCC	4 cut(s)	77, 271, 364, 523
Lsp1109I	GCAGC	1 cut(s)	44
LweI	GCATC	5 cut(s)	250, 454, 585, 718, 888
MaeII	ACGT	1 cut(s)	803
MaeIII	GTNAC	1 cut(s)	99
MhlI	GDGCHC	4 cut(s)	74, 181, 369, 844
MluCI	AATT	2 cut(s)	856, 878
MlyI	GAGTC	1 cut(s)	218
MmeI	TCCRAC	1 cut(s)	90
MroNI	GCCGGC	1 cut(s)	598
MroXI	GAANNNNTTC	2 cut(s)	627, 665
MseI	TTAA	4 cut(s)	144, 171, 723, 848
MspI	CCGG	3 cut(s)	181, 384, 599
MspR9I	CCNGG	4 cut(s)	181, 182, 384, 838
Mva1269I	GAATGC	2 cut(s)	428, 761
MvaI	CCWGG	1 cut(s)	838
MwoI	GCNNNNNNNGC	5 cut(s)	46, 496, 532, 595, 692
NaeI	GCCGGC	1 cut(s)	600
NciI	CCSGG	3 cut(s)	181, 182, 384
NgoMIV	GCCGGC	1 cut(s)	598
NlaIII	CATG	5 cut(s)	130, 227, 394, 593, 865
NlaIV	GGNNCC	5 cut(s)	73, 273, 474, 475, 843
NmeAIII	GCCGAG	3 cut(s)	66, 300, 544
NspI	RCATGY	3 cut(s)	227, 593, 865
PagI	TCATGA	1 cut(s)	390
PciI	ACATGT	1 cut(s)	223
PctI	GAATGC	2 cut(s)	428, 761
PdiI	GCCGGC	1 cut(s)	600
PdmI	GAANNNNTTC	2 cut(s)	627, 665
PfeI	GAWTC	4 cut(s)	191, 376, 387, 709
PkrI	GCNGC	2 cut(s)	34, 332
PleI	GAGTC	1 cut(s)	217
PpsI	GAGTC	1 cut(s)	217
PpuMI	RGGWCCY	1 cut(s)	473
PscI	ACATGT	1 cut(s)	223
Psp5II	RGGWCCY	1 cut(s)	473
Psp6I	CCWGG	1 cut(s)	836
PspGI	CCWGG	1 cut(s)	836
PspN4I	GGNNCC	5 cut(s)	73, 273, 474, 475, 843
PspPI	GGNCC	2 cut(s)	473, 830
PspPPI	RGGWCCY	1 cut(s)	473
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
SaqAI	TTAA	4 cut(s)	144, 171, 723, 848
SatI	GCNGC	2 cut(s)	33, 331
Sau96I	GGNCC	2 cut(s)	473, 830
SchI	GAGTC	1 cut(s)	218
ScrFI	CCNGG	4 cut(s)	181, 182, 384, 838
SduI	GDGCHC	4 cut(s)	74, 181, 369, 844
SetI	ASST	4 cut(s)	425, 501, 516, 806
SfaNI	GCATC	5 cut(s)	250, 454, 585, 718, 888
SinI	GGWCC	1 cut(s)	473
SmaI	CCCGGG	1 cut(s)	182
Sse9I	AATT	2 cut(s)	856, 878
SsiI	CCGC	8 cut(s)	49, 239, 245, 282, 311, 331, 748, 911
StyD4I	CCNGG	4 cut(s)	179, 180, 382, 836
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	4 cut(s)	165, 252, 574, 907
TaiI	ACGT	1 cut(s)	806
TaqII	GACCGA	1 cut(s)	545
TasI	AATT	2 cut(s)	856, 878
TauI	GCSGC	1 cut(s)	333
TfiI	GAWTC	4 cut(s)	191, 376, 387, 709
Tru1I	TTAA	4 cut(s)	144, 171, 723, 848
Tru9I	TTAA	4 cut(s)	144, 171, 723, 848
TscAI	CASTG	2 cut(s)	474, 822
TseI	GCWGC	1 cut(s)	32
TspDTI	ATGAA	3 cut(s)	143, 170, 407
TspMI	CCCGGG	1 cut(s)	180
TspRI	CASTG	2 cut(s)	474, 822
VpaK11BI	GGWCC	1 cut(s)	473
XceI	RCATGY	3 cut(s)	227, 593, 865
XmaI	CCCGGG	1 cut(s)	180
XmnI	GAANNNNTTC	2 cut(s)	627, 665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.