Rroxscaffold_2G00093630

Rrp15p

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0009316
Physical Location & Seq
Forward (+)
14957671 .. 14960296
2626 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00093630.1

Sequence Viewer

Length: 915 bp
ATGGCCGGAGAAACCCAATTGGCAGAAGCAGCAAAAGGTCCAAACAAGAGGCGAATAGGGAAGACGAAGGGGTCTAAGGCCAGAAAGAAAGCAAAGAAGATGCCGCACGCATCGGACGGCAGCAGAGCCATGAAGCCCAAGAAGATTGACCCCAAAATGAAGAAGCTTTATCGAAAACGGGCCAGAGAGTACGATTCAGAGGAGGAGGAGGAGGAGGAGGAGAGTGGTGGGTCTGAGGAAGAAGGAGAAGATAAAGAGGCGGAAGCTAAGGAGAGGCGTAAAGCAGAGGAAGGGTTCTCGGATGATGAGGAAGACGATGAAGTTCAGCCCGGAATTACCAAACTTTCAGAGGGGTGCAATGCGTTTAGGTTGGCTTTCAGGAGCATAATCAAGAAGAGTGTTGCCGACGATGTAATGGGACCAGTGTTATCGGGGAACAAGAAGCTTATTGCAGAAAAGCTGGCTGAAGAGGATGCTGAGCGCAAGGTCAAGGGAGAGGCTAAGGAAAAACAATTGGTAATAGAAAAGGGTCATGTTGTTAAACCTGTCAACTATGACCCGCATGAAAAGTTTCTAATTAGTCTTGCTACTAGAGGAGTGGTCACATTGTTCAATGCTGTCAGCAAGGCACAGAATGCTCAGAAAGGACTGGATCCTTCCAGGTTTAAAGATGCAAAAGTGATAAGAAAGCGGAGGAAAGAAGCCTTCTTTTCAGAGTTGGGCAAAACTAGTGTTTCAGCAAAGGCTCAGACATCTAAAGGCTCAGTGGAGAATGAAGGGCCTGCCTGGGCTCCTTTGCGAGATAATTTCATGCTAACAAATTCCAAGTTGAAGGACTGGGATAAAATGACGGAGCAAGTTGGGAAAGATGACATTGGAAGGATGCCTGAAGATAGTAGTTCAGACGACGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rrp15p

Protein Analysis

304

Amino Acids

33.9

Weight (kDa)

8.58

Isoelectric Point (pI)

49.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rrp15p PF07890 122 - 240 9.9e-18 Rrp15p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 70
AciI CCGC 4 cut(s) 104, 260, 560, 691
AclWI GGATC 2 cut(s) 647, 660
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 820
AcuI CTGAAG 2 cut(s) 486, 909
AfaI GTAC 1 cut(s) 191
AgsI TTSAA 2 cut(s) 613, 832
AhlI ACTAGT 1 cut(s) 728
AjnI CCWGG 2 cut(s) 659, 785
AluBI AGCT 4 cut(s) 166, 266, 445, 460
AluI AGCT 4 cut(s) 166, 266, 445, 460
AlwI GGATC 2 cut(s) 647, 660
AoxI GGCC 4 cut(s) 3, 78, 180, 779
ApeKI GCWGC 2 cut(s) 29, 120
ApoI RAATTY 1 cut(s) 820
Asp700I GAANNNNTTC 1 cut(s) 570
AspLEI GCGC 1 cut(s) 483
AspS9I GGNCC 4 cut(s) 38, 180, 419, 779
AsuC2I CCSGG 1 cut(s) 330
AvaII GGWCC 2 cut(s) 38, 419
BamHI GGATCC 1 cut(s) 652
BanII GRGCYC 1 cut(s) 793
BbsI GAAGAC 2 cut(s) 68, 318
BbvI GCAGC 2 cut(s) 41, 132
BceAI ACGGC 1 cut(s) 133
BciT130I CCWGG 2 cut(s) 661, 787
BcnI CCSGG 1 cut(s) 330
BcuI ACTAGT 1 cut(s) 728
BfaI CTAG 2 cut(s) 591, 729
BisI GCNGC 3 cut(s) 30, 104, 121
BlpI GCTNAGC 1 cut(s) 477
BlsI GCNGC 3 cut(s) 31, 105, 122
Bme1390I CCNGG 3 cut(s) 330, 661, 787
Bme18I GGWCC 2 cut(s) 38, 419
BmgT120I GGNCC 4 cut(s) 38, 180, 419, 779
BmiI GGNNCC 3 cut(s) 420, 654, 792
BmrFI CCNGG 3 cut(s) 330, 661, 787
BmrI ACTGGG 1 cut(s) 847
BmsI GCATC 5 cut(s) 90, 119, 463, 661, 873
BmuI ACTGGG 1 cut(s) 847
BpiI GAAGAC 2 cut(s) 68, 318
Bpu10I CCTNAGC 2 cut(s) 267, 501
Bpu1102I GCTNAGC 1 cut(s) 477
BpuMI CCSGG 1 cut(s) 330
BsaJI CCNNGG 1 cut(s) 786
Bse1I ACTGG 3 cut(s) 422, 654, 842
Bse3DI GCAATG 1 cut(s) 364
BseBI CCWGG 2 cut(s) 661, 787
BseDI CCNNGG 1 cut(s) 786
BseGI GGATG 3 cut(s) 307, 478, 888
BseMI GCAATG 1 cut(s) 364
BseMII CTCAG 5 cut(s) 225, 468, 653, 761, 777
BseNI ACTGG 3 cut(s) 422, 654, 842
BseRI GAGGAG 8 cut(s) 215, 218, 221, 224, 227, 230, 233, 609
BseXI GCAGC 2 cut(s) 41, 132
BshFI GGCC 4 cut(s) 5, 80, 182, 781
BsiSI CCGG 2 cut(s) 6, 330
BslFI GGGAC 1 cut(s) 432
BsmFI GGGAC 1 cut(s) 432
BsmI GAATGC 1 cut(s) 640
BsnI GGCC 4 cut(s) 5, 80, 182, 781
Bsp1286I GDGCHC 1 cut(s) 793
Bsp143I GATC 1 cut(s) 652
Bsp1720I GCTNAGC 1 cut(s) 477
BspACI CCGC 4 cut(s) 104, 260, 560, 691
BspANI GGCC 4 cut(s) 5, 80, 182, 781
BspCNI CTCAG 5 cut(s) 226, 469, 652, 760, 776
BspLI GGNNCC 3 cut(s) 420, 654, 792
BspPI GGATC 2 cut(s) 647, 660
BsrDI GCAATG 1 cut(s) 364
BsrI ACTGG 3 cut(s) 422, 654, 842
BssECI CCNNGG 1 cut(s) 786
BssMI GATC 1 cut(s) 652
Bst2UI CCWGG 2 cut(s) 661, 787
Bst6I CTCTTC 2 cut(s) 389, 462
BstAPI GCANNNNNTGC 1 cut(s) 635
BstC8I GCNNGC 3 cut(s) 108, 462, 783
BstDEI CTNAG 8 cut(s) 75, 234, 267, 477, 501, 639, 747, 763
BstF5I GGATG 3 cut(s) 307, 478, 888
BstHHI GCGC 1 cut(s) 483
BstKTI GATC 1 cut(s) 655
BstMBI GATC 1 cut(s) 652
BstMWI GCNNNNNNNGC 2 cut(s) 29, 635
BstNI CCWGG 2 cut(s) 661, 787
BstSCI CCNGG 3 cut(s) 328, 659, 785
BstV1I GCAGC 2 cut(s) 41, 132
BstV2I GAAGAC 2 cut(s) 68, 318
BstX2I RGATCY 1 cut(s) 652
BstYI RGATCY 1 cut(s) 652
BsuRI GGCC 4 cut(s) 5, 80, 182, 781
BtsCI GGATG 3 cut(s) 307, 478, 888
BtsIMutI CAGTG 2 cut(s) 429, 771
Cac8I GCNNGC 3 cut(s) 108, 462, 783
CfoI GCGC 1 cut(s) 483
Cfr13I GGNCC 4 cut(s) 38, 180, 419, 779
Csp6I GTAC 1 cut(s) 190
CviAII CATG 4 cut(s) 130, 533, 563, 811
CviQI GTAC 1 cut(s) 190
DdeI CTNAG 8 cut(s) 75, 234, 267, 477, 501, 639, 747, 763
DpnI GATC 1 cut(s) 654
DpnII GATC 1 cut(s) 652
DraI TTTAAA 1 cut(s) 667
DrdI GACNNNNNNGTC 1 cut(s) 70
DseDI GACNNNNNNGTC 1 cut(s) 70
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 389, 462
EarI CTCTTC 2 cut(s) 389, 462
EciI GGCGGA 1 cut(s) 275
Eco24I GRGCYC 1 cut(s) 793
Eco47I GGWCC 2 cut(s) 38, 419
Eco57I CTGAAG 2 cut(s) 486, 909
EcoO109I RGGNCCY 1 cut(s) 779
EcoRII CCWGG 2 cut(s) 659, 785
EcoT38I GRGCYC 1 cut(s) 793
FaeI CATG 4 cut(s) 133, 536, 566, 814
FaiI YATR 6 cut(s) 131, 386, 534, 555, 564, 812
FaqI GGGAC 1 cut(s) 432
FatI CATG 4 cut(s) 129, 532, 562, 810
FauI CCCGC 1 cut(s) 567
Fnu4HI GCNGC 3 cut(s) 30, 104, 121
FokI GGATG 3 cut(s) 314, 485, 895
FriOI GRGCYC 1 cut(s) 793
Fsp4HI GCNGC 3 cut(s) 30, 104, 121
FspBI CTAG 2 cut(s) 591, 729
GlaI GCGC 1 cut(s) 482
GluI GCNGC 3 cut(s) 30, 104, 121
HaeIII GGCC 4 cut(s) 5, 80, 182, 781
HapII CCGG 2 cut(s) 6, 330
HhaI GCGC 1 cut(s) 483
Hin1II CATG 4 cut(s) 133, 536, 566, 814
Hin6I GCGC 1 cut(s) 481
HinP1I GCGC 1 cut(s) 481
HincII GTYRAC 1 cut(s) 550
HindII GTYRAC 1 cut(s) 550
HindIII AAGCTT 2 cut(s) 164, 443
HinfI GANTC 1 cut(s) 194
HpaII CCGG 2 cut(s) 6, 330
Hpy166II GTNNAC 1 cut(s) 550
Hpy188I TCNGA 9 cut(s) 115, 199, 235, 301, 349, 642, 715, 750, 904
Hpy188III TCNNGA 2 cut(s) 379, 391
Hpy8I GTNNAC 1 cut(s) 550
Hpy99I CGWCG 2 cut(s) 410, 911
HpyAV CCTTC 8 cut(s) 61, 236, 284, 666, 715, 770, 826, 873
HpyCH4V TGCA 3 cut(s) 357, 452, 674
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 635
HpyF3I CTNAG 8 cut(s) 75, 234, 267, 477, 501, 639, 747, 763
Hsp92II CATG 4 cut(s) 133, 536, 566, 814
HspAI GCGC 1 cut(s) 481
Kzo9I GATC 1 cut(s) 652
LmnI GCTCC 3 cut(s) 381, 796, 853
Lsp1109I GCAGC 2 cut(s) 41, 132
LweI GCATC 5 cut(s) 90, 119, 463, 661, 873
MaeI CTAG 2 cut(s) 591, 729
MaeIII GTNAC 1 cut(s) 601
MalI GATC 1 cut(s) 654
MboI GATC 1 cut(s) 652
MfeI CAATTG 2 cut(s) 17, 512
MflI RGATCY 1 cut(s) 652
MhlI GDGCHC 1 cut(s) 793
MluCI AATT 6 cut(s) 17, 333, 512, 576, 805, 820
MroXI GAANNNNTTC 1 cut(s) 570
MseI TTAA 2 cut(s) 540, 666
MspI CCGG 2 cut(s) 6, 330
MspR9I CCNGG 3 cut(s) 330, 661, 787
MunI CAATTG 2 cut(s) 17, 512
Mva1269I GAATGC 1 cut(s) 640
MvaI CCWGG 2 cut(s) 661, 787
MwoI GCNNNNNNNGC 2 cut(s) 29, 635
NciI CCSGG 1 cut(s) 330
NdeII GATC 1 cut(s) 652
NlaIII CATG 4 cut(s) 133, 536, 566, 814
NlaIV GGNNCC 3 cut(s) 420, 654, 792
NmuCI GTSAC 1 cut(s) 601
PctI GAATGC 1 cut(s) 640
PdmI GAANNNNTTC 1 cut(s) 570
PfeI GAWTC 1 cut(s) 194
PkrI GCNGC 3 cut(s) 31, 105, 122
Psp6I CCWGG 2 cut(s) 659, 785
PspGI CCWGG 2 cut(s) 659, 785
PspN4I GGNNCC 3 cut(s) 420, 654, 792
PspPI GGNCC 4 cut(s) 38, 180, 419, 779
PsuI RGATCY 1 cut(s) 652
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
SaqAI TTAA 2 cut(s) 540, 666
SatI GCNGC 3 cut(s) 30, 104, 121
Sau3AI GATC 1 cut(s) 652
Sau96I GGNCC 4 cut(s) 38, 180, 419, 779
ScrFI CCNGG 3 cut(s) 330, 661, 787
SduI GDGCHC 1 cut(s) 793
SetI ASST 9 cut(s) 40, 168, 268, 371, 447, 462, 489, 547, 665
SfaNI GCATC 5 cut(s) 90, 119, 463, 661, 873
SinI GGWCC 2 cut(s) 38, 419
SpeI ACTAGT 1 cut(s) 728
Sse9I AATT 6 cut(s) 17, 333, 512, 576, 805, 820
SsiI CCGC 4 cut(s) 104, 260, 560, 691
SspMI CTAG 2 cut(s) 591, 729
StyD4I CCNGG 3 cut(s) 328, 659, 785
TaqI TCGA 1 cut(s) 172
TasI AATT 6 cut(s) 17, 333, 512, 576, 805, 820
TauI GCSGC 1 cut(s) 106
TfiI GAWTC 1 cut(s) 194
Tru1I TTAA 2 cut(s) 540, 666
Tru9I TTAA 2 cut(s) 540, 666
TscAI CASTG 2 cut(s) 429, 771
TseFI GTSAC 1 cut(s) 601
TseI GCWGC 2 cut(s) 29, 120
Tsp45I GTSAC 1 cut(s) 601
TspDTI ATGAA 6 cut(s) 146, 173, 333, 579, 789, 799
TspGWI ACGGA 1 cut(s) 866
TspRI CASTG 2 cut(s) 429, 771
VpaK11BI GGWCC 2 cut(s) 38, 419
XapI RAATTY 1 cut(s) 820
XmnI GAANNNNTTC 1 cut(s) 570
XspI CTAG 2 cut(s) 591, 729
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.