Rh2AG514600

Rrp15p

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0009316
Physical Location & Seq
Reverse (-)
74206439 .. 74209141
2703 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG514600.1

Sequence Viewer

Length: 696 bp
ATGGCCGGAGAAACCCAATTGGCGGAAGCAGCAAAAGGTCCAAACAAGAGGCGAATAGGGAAGACGAAGGGGTCTAAGGCCAGAAAGAAAGCAAAGAAGATGCCGCACGCGTCAGACGGCAGCAGAGCCATGAAGCCCAAGAAGATTGACCCGAAAATGAAGAAGCTTTATCGAAAACGGGCCAGAGAGTACGATTCAGAGGAGGAGAGTGGTGGGTCTGAAGAGGAAGGAGAAGAAAAAGAGGCGGAAGCTAAGGAGAGGCGTAAAGCAGAGGAAGGGTTCTCGGATGATGAGGAAGACGATGAAGTTCAGCCCGGAATTACGAAACTTTCAGAGGGGTGCAATGCGTTTAGGTTGGCTTTCAGGAGCATAATCAAGAAGAGTGTAGCTGACGATGTAATGGGACCAGTGTTATCGGGGAACAAGAAGCTTATTGCAGAAAAGCTGGCTGAAGAGGATGCTGAGCGCAAGGTCAAGGGAGAGGCTAAGGAAAAACAATTGGTAATAGAAAAGGGGCATGTTGTTAAACCTGTCAACTATGACCCGCATGAAAAGTTTCTAATTAGTCTTGCTACTAGAGGAGTGGTCACATTGTTCAATGCTGTCAGCAAGGCACAGAATGCTCAGAAAGGACTGGATCCTTCCAGGTTTAAAGATGCAAAAGGTATGCTTCTAAGCACCAAAACTAGAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rrp15p

Protein Analysis

231

Amino Acids

25.63

Weight (kDa)

9.48

Isoelectric Point (pI)

44.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rrp15p PF07890 117 - 215 8.5e-16 Rrp15p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 70
AccII CGCG 1 cut(s) 110
AciI CCGC 4 cut(s) 23, 104, 245, 545
AclWI GGATC 2 cut(s) 632, 645
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 690
AcuI CTGAAG 2 cut(s) 240, 471
AfaI GTAC 1 cut(s) 191
AfiI CCNNNNNNNGG 1 cut(s) 22
AflIII ACRYGT 1 cut(s) 108
AgsI TTSAA 1 cut(s) 598
AjnI CCWGG 1 cut(s) 644
AluBI AGCT 5 cut(s) 166, 251, 389, 430, 445
AluI AGCT 5 cut(s) 166, 251, 389, 430, 445
AlwI GGATC 2 cut(s) 632, 645
AoxI GGCC 3 cut(s) 3, 78, 180
ApeKI GCWGC 2 cut(s) 29, 120
ApoI RAATTY 1 cut(s) 690
Asp700I GAANNNNTTC 1 cut(s) 555
AspLEI GCGC 1 cut(s) 468
AspS9I GGNCC 3 cut(s) 38, 180, 404
AsuC2I CCSGG 1 cut(s) 315
AvaII GGWCC 2 cut(s) 38, 404
BamHI GGATCC 1 cut(s) 637
BbsI GAAGAC 2 cut(s) 68, 303
BbvI GCAGC 2 cut(s) 41, 132
BceAI ACGGC 1 cut(s) 133
BciT130I CCWGG 1 cut(s) 646
BcnI CCSGG 1 cut(s) 315
BfaI CTAG 2 cut(s) 576, 687
BisI GCNGC 3 cut(s) 30, 104, 121
BlpI GCTNAGC 1 cut(s) 462
BlsI GCNGC 3 cut(s) 31, 105, 122
Bme1390I CCNGG 2 cut(s) 315, 646
Bme18I GGWCC 2 cut(s) 38, 404
BmgT120I GGNCC 3 cut(s) 38, 180, 404
BmiI GGNNCC 2 cut(s) 405, 639
BmrFI CCNGG 2 cut(s) 315, 646
BmsI GCATC 3 cut(s) 90, 448, 646
BpiI GAAGAC 2 cut(s) 68, 303
Bpu10I CCTNAGC 2 cut(s) 252, 486
Bpu1102I GCTNAGC 1 cut(s) 462
BpuMI CCSGG 1 cut(s) 315
Bsc4I CCNNNNNNNGG 1 cut(s) 22
Bse1I ACTGG 2 cut(s) 407, 639
Bse3DI GCAATG 1 cut(s) 349
BseBI CCWGG 1 cut(s) 646
BseGI GGATG 2 cut(s) 292, 463
BseLI CCNNNNNNNGG 1 cut(s) 22
BseMI GCAATG 1 cut(s) 349
BseMII CTCAG 2 cut(s) 453, 638
BseNI ACTGG 2 cut(s) 407, 639
BseRI GAGGAG 3 cut(s) 215, 218, 594
BseXI GCAGC 2 cut(s) 41, 132
Bsh1236I CGCG 1 cut(s) 110
BshFI GGCC 3 cut(s) 5, 80, 182
BsiSI CCGG 2 cut(s) 6, 315
BslFI GGGAC 1 cut(s) 417
BslI CCNNNNNNNGG 1 cut(s) 22
BsmFI GGGAC 1 cut(s) 417
BsmI GAATGC 1 cut(s) 625
BsnI GGCC 3 cut(s) 5, 80, 182
Bsp143I GATC 1 cut(s) 637
Bsp1720I GCTNAGC 1 cut(s) 462
BspACI CCGC 4 cut(s) 23, 104, 245, 545
BspANI GGCC 3 cut(s) 5, 80, 182
BspCNI CTCAG 2 cut(s) 454, 637
BspFNI CGCG 1 cut(s) 110
BspLI GGNNCC 2 cut(s) 405, 639
BspPI GGATC 2 cut(s) 632, 645
BsrDI GCAATG 1 cut(s) 349
BsrI ACTGG 2 cut(s) 407, 639
BssMI GATC 1 cut(s) 637
Bst2UI CCWGG 1 cut(s) 646
Bst6I CTCTTC 3 cut(s) 216, 374, 447
BstAPI GCANNNNNTGC 1 cut(s) 620
BstC8I GCNNGC 2 cut(s) 108, 447
BstDEI CTNAG 6 cut(s) 75, 252, 462, 486, 624, 674
BstF5I GGATG 2 cut(s) 292, 463
BstFNI CGCG 1 cut(s) 110
BstHHI GCGC 1 cut(s) 468
BstKTI GATC 1 cut(s) 640
BstMBI GATC 1 cut(s) 637
BstMWI GCNNNNNNNGC 2 cut(s) 29, 620
BstNI CCWGG 1 cut(s) 646
BstNSI RCATGY 1 cut(s) 521
BstSCI CCNGG 2 cut(s) 313, 644
BstUI CGCG 1 cut(s) 110
BstV1I GCAGC 2 cut(s) 41, 132
BstV2I GAAGAC 2 cut(s) 68, 303
BstX2I RGATCY 1 cut(s) 637
BstYI RGATCY 1 cut(s) 637
BsuRI GGCC 3 cut(s) 5, 80, 182
BtsCI GGATG 2 cut(s) 292, 463
BtsIMutI CAGTG 1 cut(s) 414
Cac8I GCNNGC 2 cut(s) 108, 447
CfoI GCGC 1 cut(s) 468
Cfr13I GGNCC 3 cut(s) 38, 180, 404
CseI GACGC 1 cut(s) 99
Csp6I GTAC 1 cut(s) 190
CviAII CATG 3 cut(s) 130, 518, 548
CviQI GTAC 1 cut(s) 190
DdeI CTNAG 6 cut(s) 75, 252, 462, 486, 624, 674
DpnI GATC 1 cut(s) 639
DpnII GATC 1 cut(s) 637
DraI TTTAAA 1 cut(s) 652
DrdI GACNNNNNNGTC 1 cut(s) 70
DseDI GACNNNNNNGTC 1 cut(s) 70
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 216, 374, 447
EarI CTCTTC 3 cut(s) 216, 374, 447
EciI GGCGGA 2 cut(s) 38, 260
Eco47I GGWCC 2 cut(s) 38, 404
Eco57I CTGAAG 2 cut(s) 240, 471
EcoRII CCWGG 1 cut(s) 644
FaeI CATG 3 cut(s) 133, 521, 551
FaiI YATR 6 cut(s) 131, 371, 519, 540, 549, 668
FalI AAGNNNNNCTT 2 cut(s) 654, 686
FaqI GGGAC 1 cut(s) 417
FatI CATG 3 cut(s) 129, 517, 547
FauI CCCGC 1 cut(s) 552
Fnu4HI GCNGC 3 cut(s) 30, 104, 121
FokI GGATG 2 cut(s) 299, 470
Fsp4HI GCNGC 3 cut(s) 30, 104, 121
FspBI CTAG 2 cut(s) 576, 687
GlaI GCGC 1 cut(s) 467
GluI GCNGC 3 cut(s) 30, 104, 121
HaeIII GGCC 3 cut(s) 5, 80, 182
HapII CCGG 2 cut(s) 6, 315
HgaI GACGC 1 cut(s) 99
HhaI GCGC 1 cut(s) 468
Hin1II CATG 3 cut(s) 133, 521, 551
Hin6I GCGC 1 cut(s) 466
HinP1I GCGC 1 cut(s) 466
HincII GTYRAC 1 cut(s) 535
HindII GTYRAC 1 cut(s) 535
HindIII AAGCTT 2 cut(s) 164, 428
HinfI GANTC 1 cut(s) 194
HpaII CCGG 2 cut(s) 6, 315
Hpy166II GTNNAC 1 cut(s) 535
Hpy188I TCNGA 6 cut(s) 115, 199, 220, 286, 334, 627
Hpy188III TCNNGA 2 cut(s) 364, 376
Hpy8I GTNNAC 1 cut(s) 535
HpyAV CCTTC 4 cut(s) 61, 221, 269, 651
HpyCH4V TGCA 3 cut(s) 342, 437, 659
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 620
HpyF3I CTNAG 6 cut(s) 75, 252, 462, 486, 624, 674
Hsp92II CATG 3 cut(s) 133, 521, 551
HspAI GCGC 1 cut(s) 466
Kzo9I GATC 1 cut(s) 637
LmnI GCTCC 1 cut(s) 366
Lsp1109I GCAGC 2 cut(s) 41, 132
LweI GCATC 3 cut(s) 90, 448, 646
MaeI CTAG 2 cut(s) 576, 687
MaeIII GTNAC 1 cut(s) 586
MalI GATC 1 cut(s) 639
MboI GATC 1 cut(s) 637
MboII GAAGA 9 cut(s) 73, 109, 154, 172, 233, 245, 308, 391, 464
MfeI CAATTG 2 cut(s) 17, 497
MflI RGATCY 1 cut(s) 637
MluCI AATT 5 cut(s) 17, 318, 497, 561, 690
MluI ACGCGT 1 cut(s) 108
MroXI GAANNNNTTC 1 cut(s) 555
MseI TTAA 2 cut(s) 525, 651
MspI CCGG 2 cut(s) 6, 315
MspR9I CCNGG 2 cut(s) 315, 646
MunI CAATTG 2 cut(s) 17, 497
Mva1269I GAATGC 1 cut(s) 625
MvaI CCWGG 1 cut(s) 646
MvnI CGCG 1 cut(s) 110
MwoI GCNNNNNNNGC 2 cut(s) 29, 620
NciI CCSGG 1 cut(s) 315
NdeII GATC 1 cut(s) 637
NlaIII CATG 3 cut(s) 133, 521, 551
NlaIV GGNNCC 2 cut(s) 405, 639
NmuCI GTSAC 1 cut(s) 586
NspI RCATGY 1 cut(s) 521
PctI GAATGC 1 cut(s) 625
PdmI GAANNNNTTC 1 cut(s) 555
PfeI GAWTC 1 cut(s) 194
PkrI GCNGC 3 cut(s) 31, 105, 122
Psp6I CCWGG 1 cut(s) 644
PspGI CCWGG 1 cut(s) 644
PspN4I GGNNCC 2 cut(s) 405, 639
PspPI GGNCC 3 cut(s) 38, 180, 404
PsuI RGATCY 1 cut(s) 637
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
SaqAI TTAA 2 cut(s) 525, 651
SatI GCNGC 3 cut(s) 30, 104, 121
Sau3AI GATC 1 cut(s) 637
Sau96I GGNCC 3 cut(s) 38, 180, 404
ScrFI CCNGG 2 cut(s) 315, 646
SfaNI GCATC 3 cut(s) 90, 448, 646
SinI GGWCC 2 cut(s) 38, 404
Sse9I AATT 5 cut(s) 17, 318, 497, 561, 690
SsiI CCGC 4 cut(s) 23, 104, 245, 545
SspMI CTAG 2 cut(s) 576, 687
StyD4I CCNGG 2 cut(s) 313, 644
TaqI TCGA 1 cut(s) 172
TasI AATT 5 cut(s) 17, 318, 497, 561, 690
TauI GCSGC 1 cut(s) 106
TfiI GAWTC 1 cut(s) 194
Tru1I TTAA 2 cut(s) 525, 651
Tru9I TTAA 2 cut(s) 525, 651
TscAI CASTG 1 cut(s) 414
TseFI GTSAC 1 cut(s) 586
TseI GCWGC 2 cut(s) 29, 120
Tsp45I GTSAC 1 cut(s) 586
TspDTI ATGAA 4 cut(s) 146, 173, 318, 564
TspRI CASTG 1 cut(s) 414
VpaK11BI GGWCC 2 cut(s) 38, 404
XapI RAATTY 1 cut(s) 690
XceI RCATGY 1 cut(s) 521
XmnI GAANNNNTTC 1 cut(s) 555
XspI CTAG 2 cut(s) 576, 687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.