FvH4_6g40390

Rrp15p

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0009316
Physical Location & Seq
Reverse (-)
31935759 .. 31939450
3692 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g40390.t2

Sequence Viewer

Length: 927 bp
ATGGCGGAAGAGACCCAATTAGCAGAAGCAGTAAGAGGACCAAACAAGAGGCGAATAGGGAAGTCAAAGGGCTCCAAAGCCAGAAAGAAATCGAAGAAGATGCCGCACGCTTCGGACGGAAGCAGAGCCATGAAGCCCAAGAAGATTGACCCCAAAATGAAGAAGCTTTATCGAAAACGAGCCAGAGAGTACGATTCAGATGAGGAAGAAGAAGAGGAGAAAGAGGAGAGTGGTGGGTCTGAAGAAGAAGAAGGAGGAGAAGGAGAAGAGAAGGAAGCAAAGGAGAGGCGTGAAGCGGAGAATGGATTCTCGGATGAGGAGGAAGACGATGAAGTTCTGCCCGGAATCATGAAACTTTCGGAGGGGTGTAATGCGTTTAGGTTGGCTTTCAAAAGCATTATCAAGAAGAGTGTTGCCGACGATGTGTTGGGACCAATAATATCAGGGAACAAGAAGCTTATTGCAGAAAAGCTTGCTGAAGCGGAAGCTGAGCGCAAGGTCAAGGGAGAGGCTAAGGACAAACAATTGGTAATAGAAAAGGGGCATGTTGTGAATCCTGTCAACTTTGACCCGCATGAAAAGTTTCTAATTAGTCTTGCTACTAGAGGAGTGGTCACATTGTTCAATGCTGTTAGCAAGGCACAACATGCTCAGAAAGGGCTGGATCCTTCCAGGTTTAAAGATGCAAAAGTGATAAGAAAGCGGAGGAAAGAAGCCTTCTTTTCAGAGTTGGGGAAAACTAGTGCTTCTGCAAAGGCTCAGACATCTAAAGGCTCAGTGGACAATGAAGGGCCTGCCTGGGCTCCATTGCGAGATAATTTCATGCTAACAAATTCCAAGTTGAAGGACTGGGATAAAATGCCGGAGCAAGTTGGGAAAGATGACATTGGAAGGATGTCAGAAGATAGTAGTTCGGAGGATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rrp15p

Protein Analysis

309

Amino Acids

34.34

Weight (kDa)

6.96

Isoelectric Point (pI)

46.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rrp15p PF07890 126 - 224 1.2e-14 Rrp15p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 5, 104, 296, 482, 572, 703
AclWI GGATC 2 cut(s) 659, 672
AcsI RAATTY 1 cut(s) 832
AcuI CTGAAG 2 cut(s) 261, 498
AfaI GTAC 1 cut(s) 191
AgsI TTSAA 3 cut(s) 391, 625, 844
AhlI ACTAGT 1 cut(s) 740
AjnI CCWGG 2 cut(s) 671, 797
AluBI AGCT 4 cut(s) 166, 457, 472, 488
AluI AGCT 4 cut(s) 166, 457, 472, 488
Alw26I GTCTC 1 cut(s) 5
AlwI GGATC 2 cut(s) 659, 672
AoxI GGCC 1 cut(s) 791
ApoI RAATTY 1 cut(s) 832
Asp700I GAANNNNTTC 2 cut(s) 305, 582
AspLEI GCGC 1 cut(s) 495
AspS9I GGNCC 3 cut(s) 38, 431, 791
AsuC2I CCSGG 1 cut(s) 342
AvaII GGWCC 2 cut(s) 38, 431
BamHI GGATCC 1 cut(s) 664
BanII GRGCYC 2 cut(s) 74, 805
BbsI GAAGAC 1 cut(s) 330
BcgI CGANNNNNNTGC 2 cut(s) 82, 116
BciT130I CCWGG 2 cut(s) 673, 799
BcnI CCSGG 1 cut(s) 342
BcoDI GTCTC 1 cut(s) 5
BcuI ACTAGT 1 cut(s) 740
BfaI CTAG 2 cut(s) 603, 741
BisI GCNGC 1 cut(s) 104
BlpI GCTNAGC 1 cut(s) 489
BlsI GCNGC 1 cut(s) 105
Bme1390I CCNGG 3 cut(s) 342, 673, 799
Bme18I GGWCC 2 cut(s) 38, 431
BmgT120I GGNCC 3 cut(s) 38, 431, 791
BmiI GGNNCC 4 cut(s) 73, 432, 666, 804
BmrFI CCNGG 3 cut(s) 342, 673, 799
BmrI ACTGGG 1 cut(s) 859
BmsI GCATC 2 cut(s) 90, 673
BmuI ACTGGG 1 cut(s) 859
BpiI GAAGAC 1 cut(s) 330
Bpu10I CCTNAGC 1 cut(s) 513
Bpu1102I GCTNAGC 1 cut(s) 489
BpuMI CCSGG 1 cut(s) 342
BsaI GGTCTC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 798
Bse1I ACTGG 1 cut(s) 854
Bse3DI GCAATG 1 cut(s) 806
BseBI CCWGG 2 cut(s) 673, 799
BseDI CCNNGG 1 cut(s) 798
BseGI GGATG 3 cut(s) 319, 900, 925
BseMI GCAATG 1 cut(s) 806
BseMII CTCAG 4 cut(s) 480, 665, 773, 789
BseNI ACTGG 1 cut(s) 854
BseRI GAGGAG 5 cut(s) 230, 239, 270, 332, 621
BshFI GGCC 1 cut(s) 793
BsiSI CCGG 2 cut(s) 342, 863
BslFI GGGAC 1 cut(s) 444
BsmAI GTCTC 1 cut(s) 5
BsmFI GGGAC 1 cut(s) 444
BsnI GGCC 1 cut(s) 793
Bso31I GGTCTC 1 cut(s) 5
Bsp1286I GDGCHC 2 cut(s) 74, 805
Bsp143I GATC 1 cut(s) 664
Bsp1720I GCTNAGC 1 cut(s) 489
BspACI CCGC 6 cut(s) 5, 104, 296, 482, 572, 703
BspANI GGCC 1 cut(s) 793
BspCNI CTCAG 4 cut(s) 481, 664, 772, 788
BspHI TCATGA 1 cut(s) 348
BspLI GGNNCC 4 cut(s) 73, 432, 666, 804
BspPI GGATC 2 cut(s) 659, 672
BspTNI GGTCTC 1 cut(s) 5
BsrDI GCAATG 1 cut(s) 806
BsrI ACTGG 1 cut(s) 854
BssECI CCNNGG 1 cut(s) 798
BssMI GATC 1 cut(s) 664
Bst2UI CCWGG 2 cut(s) 673, 799
Bst6I CTCTTC 4 cut(s) 3, 207, 261, 401
BstAPI GCANNNNNTGC 1 cut(s) 647
BstC8I GCNNGC 3 cut(s) 108, 474, 795
BstDEI CTNAG 5 cut(s) 489, 513, 651, 759, 775
BstF5I GGATG 3 cut(s) 319, 900, 925
BstHHI GCGC 1 cut(s) 495
BstKTI GATC 1 cut(s) 667
BstMAI GTCTC 1 cut(s) 5
BstMBI GATC 1 cut(s) 664
BstMWI GCNNNNNNNGC 1 cut(s) 647
BstNI CCWGG 2 cut(s) 673, 799
BstNSI RCATGY 2 cut(s) 548, 650
BstSCI CCNGG 3 cut(s) 340, 671, 797
BstV2I GAAGAC 1 cut(s) 330
BstX2I RGATCY 1 cut(s) 664
BstYI RGATCY 1 cut(s) 664
BsuRI GGCC 1 cut(s) 793
BtsCI GGATG 3 cut(s) 319, 900, 925
BtsIMutI CAGTG 1 cut(s) 783
Cac8I GCNNGC 3 cut(s) 108, 474, 795
CciI TCATGA 1 cut(s) 348
CfoI GCGC 1 cut(s) 495
Cfr13I GGNCC 3 cut(s) 38, 431, 791
Csp6I GTAC 1 cut(s) 190
CviAII CATG 6 cut(s) 130, 349, 545, 575, 647, 823
CviQI GTAC 1 cut(s) 190
DdeI CTNAG 5 cut(s) 489, 513, 651, 759, 775
DpnI GATC 1 cut(s) 666
DpnII GATC 1 cut(s) 664
DraI TTTAAA 1 cut(s) 679
Eam1104I CTCTTC 4 cut(s) 3, 207, 261, 401
EarI CTCTTC 4 cut(s) 3, 207, 261, 401
EciI GGCGGA 1 cut(s) 20
Eco24I GRGCYC 2 cut(s) 74, 805
Eco31I GGTCTC 1 cut(s) 5
Eco47I GGWCC 2 cut(s) 38, 431
Eco57I CTGAAG 2 cut(s) 261, 498
EcoO109I RGGNCCY 1 cut(s) 791
EcoRII CCWGG 2 cut(s) 671, 797
EcoT38I GRGCYC 2 cut(s) 74, 805
FaeI CATG 6 cut(s) 133, 352, 548, 578, 650, 826
FaiI YATR 6 cut(s) 131, 350, 546, 576, 648, 824
FaqI GGGAC 1 cut(s) 444
FatI CATG 6 cut(s) 129, 348, 544, 574, 646, 822
FauI CCCGC 1 cut(s) 579
Fnu4HI GCNGC 1 cut(s) 104
FokI GGATG 2 cut(s) 326, 907
FriOI GRGCYC 2 cut(s) 74, 805
Fsp4HI GCNGC 1 cut(s) 104
FspBI CTAG 2 cut(s) 603, 741
GlaI GCGC 1 cut(s) 494
GluI GCNGC 1 cut(s) 104
HaeIII GGCC 1 cut(s) 793
HapII CCGG 2 cut(s) 342, 863
HhaI GCGC 1 cut(s) 495
Hin1II CATG 6 cut(s) 133, 352, 548, 578, 650, 826
Hin6I GCGC 1 cut(s) 493
HinP1I GCGC 1 cut(s) 493
HincII GTYRAC 1 cut(s) 562
HindII GTYRAC 1 cut(s) 562
HindIII AAGCTT 3 cut(s) 164, 455, 470
HinfI GANTC 4 cut(s) 194, 306, 345, 553
HpaII CCGG 2 cut(s) 342, 863
Hpy166II GTNNAC 2 cut(s) 562, 781
Hpy188III TCNNGA 2 cut(s) 349, 403
Hpy8I GTNNAC 2 cut(s) 562, 781
Hpy99I CGWCG 1 cut(s) 422
HpyAV CCTTC 8 cut(s) 245, 254, 265, 678, 727, 782, 838, 885
HpyCH4V TGCA 3 cut(s) 464, 686, 752
HpyF10VI GCNNNNNNNGC 1 cut(s) 647
HpyF3I CTNAG 5 cut(s) 489, 513, 651, 759, 775
Hsp92II CATG 6 cut(s) 133, 352, 548, 578, 650, 826
HspAI GCGC 1 cut(s) 493
Kzo9I GATC 1 cut(s) 664
LmnI GCTCC 3 cut(s) 77, 808, 865
LweI GCATC 2 cut(s) 90, 673
MaeI CTAG 2 cut(s) 603, 741
MaeIII GTNAC 1 cut(s) 613
MalI GATC 1 cut(s) 666
MboI GATC 1 cut(s) 664
MfeI CAATTG 1 cut(s) 524
MflI RGATCY 1 cut(s) 664
MhlI GDGCHC 2 cut(s) 74, 805
MluCI AATT 5 cut(s) 17, 524, 588, 817, 832
MroXI GAANNNNTTC 2 cut(s) 305, 582
MseI TTAA 1 cut(s) 678
MspI CCGG 2 cut(s) 342, 863
MspR9I CCNGG 3 cut(s) 342, 673, 799
MunI CAATTG 1 cut(s) 524
MvaI CCWGG 2 cut(s) 673, 799
MwoI GCNNNNNNNGC 1 cut(s) 647
NciI CCSGG 1 cut(s) 342
NdeII GATC 1 cut(s) 664
NlaIII CATG 6 cut(s) 133, 352, 548, 578, 650, 826
NlaIV GGNNCC 4 cut(s) 73, 432, 666, 804
NmuCI GTSAC 1 cut(s) 613
NspI RCATGY 2 cut(s) 548, 650
PagI TCATGA 1 cut(s) 348
PdmI GAANNNNTTC 2 cut(s) 305, 582
PfeI GAWTC 4 cut(s) 194, 306, 345, 553
PkrI GCNGC 1 cut(s) 105
Psp6I CCWGG 2 cut(s) 671, 797
PspGI CCWGG 2 cut(s) 671, 797
PspN4I GGNNCC 4 cut(s) 73, 432, 666, 804
PspPI GGNCC 3 cut(s) 38, 431, 791
PsuI RGATCY 1 cut(s) 664
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
SaqAI TTAA 1 cut(s) 678
SatI GCNGC 1 cut(s) 104
Sau3AI GATC 1 cut(s) 664
Sau96I GGNCC 3 cut(s) 38, 431, 791
ScrFI CCNGG 3 cut(s) 342, 673, 799
SduI GDGCHC 2 cut(s) 74, 805
SetI ASST 7 cut(s) 168, 383, 459, 474, 490, 501, 677
SfaNI GCATC 2 cut(s) 90, 673
SinI GGWCC 2 cut(s) 38, 431
SpeI ACTAGT 1 cut(s) 740
Sse9I AATT 5 cut(s) 17, 524, 588, 817, 832
SsiI CCGC 6 cut(s) 5, 104, 296, 482, 572, 703
SspMI CTAG 2 cut(s) 603, 741
StyD4I CCNGG 3 cut(s) 340, 671, 797
TaqI TCGA 2 cut(s) 92, 172
TasI AATT 5 cut(s) 17, 524, 588, 817, 832
TauI GCSGC 1 cut(s) 106
TfiI GAWTC 4 cut(s) 194, 306, 345, 553
Tru1I TTAA 1 cut(s) 678
Tru9I TTAA 1 cut(s) 678
TscAI CASTG 1 cut(s) 783
TseFI GTSAC 1 cut(s) 613
Tsp45I GTSAC 1 cut(s) 613
TspDTI ATGAA 7 cut(s) 146, 173, 345, 365, 591, 801, 811
TspGWI ACGGA 1 cut(s) 132
TspRI CASTG 1 cut(s) 783
VpaK11BI GGWCC 2 cut(s) 38, 431
XapI RAATTY 1 cut(s) 832
XceI RCATGY 2 cut(s) 548, 650
XmnI GAANNNNTTC 2 cut(s) 305, 582
XspI CTAG 2 cut(s) 603, 741
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.