RchiOBHm_Chr2g0155591

Rrp15p

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0009316
Physical Location & Seq
Reverse (-)
72458807 .. 72461446
2640 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52446

Sequence Viewer

Length: 915 bp
ATGGCCGGAGAAACCCAATTGGCAGAAGCAGCAAAAGGTCCAAACAAGAGGCGAATAGGGAAGACGAAGGGGTCTAAGGCCAGAAAGAAAGCAAAGAAGATGCCGCACGCGTCGGACGGAAGCAGAGCCATGAAGCCCAAGAAGATTGACCCGAAAATGAAGAAGCTTTATCGAAAACGGGCCAGAGAGTACGATTCAGAGGAGGAGAAGGAGGAGGAGAGTGGTGGGTCTGAAGAGGAAGGAGAAGAAAAAGAGGCGGAAGCTAAGGAGAGGCGTAAAGCAGAGGAAGGGTTCTCGGATGATGAGGAAGACGATGAAGTTCAGCCCGGAATTACGAAACTTTCAGAGGGGTGCAATGCGTTTAGGTTGGCTTTCAGGAGCATAGTCAAGAAGAGTGTTGCTGACGATGTAATGGGACCAGTGTTATCAGGGAACAAGAAGCTTATTGCAGAAAAGCTGGCTGAAGAGGATGCTGAGCGCAAGGTCAAGGGAGAGGCTAAGGAAAAACAATTGGTAATAGAAAAGGGGCATGTTGTTAAACCTGTCAACTATGACCCGCATGAAAAGTTTCTAATTAGTCTTGCTACTAGAGGAGTGGTCACATTGTTCAATGCTGTCAGCAAGGCACAGAATGCTCAGAAAGGACTGGATCCTTCCAGGTTTAAAGATGCAAAAGTGATAAGAAAGCGGAGGAAAGAAGCCTTCTTTTCAGAGTTGGGCAAAACTGGTGCTTCTGCAAAGGCTCAGACGTCTAAAGGCTCAGTGGAGAATGAAGGGCCTGCCTGGGCTCCATTGCGAGATAATTTCATGCTAACAAATTCCAAGTTGAAGGACTGGGATAAAATGACGGAGCAAGTTGGGAAAGATGACATTGGAAGGATGTCTGAAGATAATAGTAGTTCGGACGATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rrp15p

Protein Analysis

304

Amino Acids

33.82

Weight (kDa)

9.0

Isoelectric Point (pI)

45.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rrp15p PF07890 121 - 239 1.3e-17 Rrp15p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 70
AatII GACGTC 1 cut(s) 752
AccII CGCG 1 cut(s) 110
AciI CCGC 4 cut(s) 104, 257, 557, 688
AclWI GGATC 2 cut(s) 644, 657
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 817
AcuI CTGAAG 3 cut(s) 252, 483, 906
AcyI GRCGYC 1 cut(s) 749
AfaI GTAC 1 cut(s) 191
AflIII ACRYGT 1 cut(s) 108
AgsI TTSAA 2 cut(s) 610, 829
AjnI CCWGG 2 cut(s) 656, 782
AluBI AGCT 4 cut(s) 166, 263, 442, 457
AluI AGCT 4 cut(s) 166, 263, 442, 457
AlwI GGATC 2 cut(s) 644, 657
AoxI GGCC 4 cut(s) 3, 78, 180, 776
ApeKI GCWGC 1 cut(s) 29
ApoI RAATTY 1 cut(s) 817
Asp700I GAANNNNTTC 1 cut(s) 567
AspLEI GCGC 1 cut(s) 480
AspS9I GGNCC 4 cut(s) 38, 180, 416, 776
AsuC2I CCSGG 1 cut(s) 327
AvaII GGWCC 2 cut(s) 38, 416
BamHI GGATCC 1 cut(s) 649
BanII GRGCYC 1 cut(s) 790
BbsI GAAGAC 2 cut(s) 68, 315
BbvI GCAGC 1 cut(s) 41
BciT130I CCWGG 2 cut(s) 658, 784
BcnI CCSGG 1 cut(s) 327
BfaI CTAG 1 cut(s) 588
BisI GCNGC 2 cut(s) 30, 104
BlpI GCTNAGC 1 cut(s) 474
BlsI GCNGC 2 cut(s) 31, 105
Bme1390I CCNGG 3 cut(s) 327, 658, 784
Bme18I GGWCC 2 cut(s) 38, 416
BmgT120I GGNCC 4 cut(s) 38, 180, 416, 776
BmiI GGNNCC 3 cut(s) 417, 651, 789
BmrFI CCNGG 3 cut(s) 327, 658, 784
BmrI ACTGGG 1 cut(s) 844
BmsI GCATC 3 cut(s) 90, 460, 658
BmuI ACTGGG 1 cut(s) 844
BpiI GAAGAC 2 cut(s) 68, 315
Bpu10I CCTNAGC 2 cut(s) 264, 498
Bpu1102I GCTNAGC 1 cut(s) 474
BpuMI CCSGG 1 cut(s) 327
BsaHI GRCGYC 1 cut(s) 749
BsaJI CCNNGG 1 cut(s) 783
Bse1I ACTGG 4 cut(s) 419, 651, 730, 839
Bse3DI GCAATG 2 cut(s) 361, 791
BseBI CCWGG 2 cut(s) 658, 784
BseDI CCNNGG 1 cut(s) 783
BseGI GGATG 3 cut(s) 304, 475, 885
BseMI GCAATG 2 cut(s) 361, 791
BseMII CTCAG 4 cut(s) 465, 650, 758, 774
BseNI ACTGG 4 cut(s) 419, 651, 730, 839
BseRI GAGGAG 5 cut(s) 215, 218, 227, 230, 606
BseXI GCAGC 1 cut(s) 41
Bsh1236I CGCG 1 cut(s) 110
BshFI GGCC 4 cut(s) 5, 80, 182, 778
BsiSI CCGG 2 cut(s) 6, 327
BslFI GGGAC 1 cut(s) 429
BsmFI GGGAC 1 cut(s) 429
BsmI GAATGC 1 cut(s) 637
BsnI GGCC 4 cut(s) 5, 80, 182, 778
Bsp1286I GDGCHC 1 cut(s) 790
Bsp143I GATC 1 cut(s) 649
Bsp1720I GCTNAGC 1 cut(s) 474
BspACI CCGC 4 cut(s) 104, 257, 557, 688
BspANI GGCC 4 cut(s) 5, 80, 182, 778
BspCNI CTCAG 4 cut(s) 466, 649, 757, 773
BspFNI CGCG 1 cut(s) 110
BspLI GGNNCC 3 cut(s) 417, 651, 789
BspPI GGATC 2 cut(s) 644, 657
BsrDI GCAATG 2 cut(s) 361, 791
BsrI ACTGG 4 cut(s) 419, 651, 730, 839
BssECI CCNNGG 1 cut(s) 783
BssMI GATC 1 cut(s) 649
BssNI GRCGYC 1 cut(s) 749
Bst2UI CCWGG 2 cut(s) 658, 784
Bst6I CTCTTC 3 cut(s) 228, 386, 459
BstACI GRCGYC 1 cut(s) 749
BstAPI GCANNNNNTGC 1 cut(s) 632
BstC8I GCNNGC 3 cut(s) 108, 459, 780
BstDEI CTNAG 7 cut(s) 75, 264, 474, 498, 636, 744, 760
BstF5I GGATG 3 cut(s) 304, 475, 885
BstFNI CGCG 1 cut(s) 110
BstHHI GCGC 1 cut(s) 480
BstKTI GATC 1 cut(s) 652
BstMBI GATC 1 cut(s) 649
BstMWI GCNNNNNNNGC 2 cut(s) 29, 632
BstNI CCWGG 2 cut(s) 658, 784
BstNSI RCATGY 1 cut(s) 533
BstSCI CCNGG 3 cut(s) 325, 656, 782
BstUI CGCG 1 cut(s) 110
BstV1I GCAGC 1 cut(s) 41
BstV2I GAAGAC 2 cut(s) 68, 315
BstX2I RGATCY 1 cut(s) 649
BstYI RGATCY 1 cut(s) 649
BsuRI GGCC 4 cut(s) 5, 80, 182, 778
BtsCI GGATG 3 cut(s) 304, 475, 885
BtsIMutI CAGTG 2 cut(s) 426, 768
Cac8I GCNNGC 3 cut(s) 108, 459, 780
CfoI GCGC 1 cut(s) 480
Cfr13I GGNCC 4 cut(s) 38, 180, 416, 776
CseI GACGC 1 cut(s) 99
Csp6I GTAC 1 cut(s) 190
CviAII CATG 4 cut(s) 130, 530, 560, 808
CviQI GTAC 1 cut(s) 190
DdeI CTNAG 7 cut(s) 75, 264, 474, 498, 636, 744, 760
DpnI GATC 1 cut(s) 651
DpnII GATC 1 cut(s) 649
DraI TTTAAA 1 cut(s) 664
DrdI GACNNNNNNGTC 1 cut(s) 70
DseDI GACNNNNNNGTC 1 cut(s) 70
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 228, 386, 459
EarI CTCTTC 3 cut(s) 228, 386, 459
EciI GGCGGA 1 cut(s) 272
Eco24I GRGCYC 1 cut(s) 790
Eco47I GGWCC 2 cut(s) 38, 416
Eco57I CTGAAG 3 cut(s) 252, 483, 906
EcoO109I RGGNCCY 1 cut(s) 776
EcoRII CCWGG 2 cut(s) 656, 782
EcoT38I GRGCYC 1 cut(s) 790
FaeI CATG 4 cut(s) 133, 533, 563, 811
FaiI YATR 6 cut(s) 131, 383, 531, 552, 561, 809
FaqI GGGAC 1 cut(s) 429
FatI CATG 4 cut(s) 129, 529, 559, 807
FauI CCCGC 1 cut(s) 564
Fnu4HI GCNGC 2 cut(s) 30, 104
FokI GGATG 3 cut(s) 311, 482, 892
FriOI GRGCYC 1 cut(s) 790
Fsp4HI GCNGC 2 cut(s) 30, 104
FspBI CTAG 1 cut(s) 588
GlaI GCGC 1 cut(s) 479
GluI GCNGC 2 cut(s) 30, 104
HaeIII GGCC 4 cut(s) 5, 80, 182, 778
HapII CCGG 2 cut(s) 6, 327
HgaI GACGC 1 cut(s) 99
HhaI GCGC 1 cut(s) 480
Hin1I GRCGYC 1 cut(s) 749
Hin1II CATG 4 cut(s) 133, 533, 563, 811
Hin6I GCGC 1 cut(s) 478
HinP1I GCGC 1 cut(s) 478
HincII GTYRAC 1 cut(s) 547
HindII GTYRAC 1 cut(s) 547
HindIII AAGCTT 2 cut(s) 164, 440
HinfI GANTC 1 cut(s) 194
HpaII CCGG 2 cut(s) 6, 327
Hpy166II GTNNAC 1 cut(s) 547
Hpy188III TCNNGA 2 cut(s) 376, 388
Hpy8I GTNNAC 1 cut(s) 547
Hpy99I CGWCG 1 cut(s) 115
HpyAV CCTTC 9 cut(s) 61, 202, 233, 281, 663, 712, 767, 823, 870
HpyCH4IV ACGT 1 cut(s) 749
HpyCH4V TGCA 4 cut(s) 354, 449, 671, 737
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 632
HpyF3I CTNAG 7 cut(s) 75, 264, 474, 498, 636, 744, 760
HpySE526I ACGT 1 cut(s) 749
Hsp92I GRCGYC 1 cut(s) 749
Hsp92II CATG 4 cut(s) 133, 533, 563, 811
HspAI GCGC 1 cut(s) 478
Kzo9I GATC 1 cut(s) 649
LmnI GCTCC 3 cut(s) 378, 793, 850
Lsp1109I GCAGC 1 cut(s) 41
LweI GCATC 3 cut(s) 90, 460, 658
MaeI CTAG 1 cut(s) 588
MaeII ACGT 1 cut(s) 749
MaeIII GTNAC 1 cut(s) 598
MalI GATC 1 cut(s) 651
MboI GATC 1 cut(s) 649
MfeI CAATTG 2 cut(s) 17, 509
MflI RGATCY 1 cut(s) 649
MhlI GDGCHC 1 cut(s) 790
MluCI AATT 6 cut(s) 17, 330, 509, 573, 802, 817
MluI ACGCGT 1 cut(s) 108
MmeI TCCRAC 1 cut(s) 93
MroXI GAANNNNTTC 1 cut(s) 567
MseI TTAA 2 cut(s) 537, 663
MspI CCGG 2 cut(s) 6, 327
MspR9I CCNGG 3 cut(s) 327, 658, 784
MunI CAATTG 2 cut(s) 17, 509
Mva1269I GAATGC 1 cut(s) 637
MvaI CCWGG 2 cut(s) 658, 784
MvnI CGCG 1 cut(s) 110
MwoI GCNNNNNNNGC 2 cut(s) 29, 632
NciI CCSGG 1 cut(s) 327
NdeII GATC 1 cut(s) 649
NlaIII CATG 4 cut(s) 133, 533, 563, 811
NlaIV GGNNCC 3 cut(s) 417, 651, 789
NmuCI GTSAC 1 cut(s) 598
NspI RCATGY 1 cut(s) 533
PctI GAATGC 1 cut(s) 637
PdmI GAANNNNTTC 1 cut(s) 567
PfeI GAWTC 1 cut(s) 194
PkrI GCNGC 2 cut(s) 31, 105
Psp6I CCWGG 2 cut(s) 656, 782
PspGI CCWGG 2 cut(s) 656, 782
PspN4I GGNNCC 3 cut(s) 417, 651, 789
PspPI GGNCC 4 cut(s) 38, 180, 416, 776
PsuI RGATCY 1 cut(s) 649
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
SaqAI TTAA 2 cut(s) 537, 663
SatI GCNGC 2 cut(s) 30, 104
Sau3AI GATC 1 cut(s) 649
Sau96I GGNCC 4 cut(s) 38, 180, 416, 776
ScrFI CCNGG 3 cut(s) 327, 658, 784
SduI GDGCHC 1 cut(s) 790
SfaNI GCATC 3 cut(s) 90, 460, 658
SinI GGWCC 2 cut(s) 38, 416
Sse9I AATT 6 cut(s) 17, 330, 509, 573, 802, 817
SsiI CCGC 4 cut(s) 104, 257, 557, 688
SspMI CTAG 1 cut(s) 588
StyD4I CCNGG 3 cut(s) 325, 656, 782
TaiI ACGT 1 cut(s) 752
TaqI TCGA 1 cut(s) 172
TasI AATT 6 cut(s) 17, 330, 509, 573, 802, 817
TauI GCSGC 1 cut(s) 106
TfiI GAWTC 1 cut(s) 194
Tru1I TTAA 2 cut(s) 537, 663
Tru9I TTAA 2 cut(s) 537, 663
TscAI CASTG 2 cut(s) 426, 768
TseFI GTSAC 1 cut(s) 598
TseI GCWGC 1 cut(s) 29
Tsp45I GTSAC 1 cut(s) 598
TspDTI ATGAA 6 cut(s) 146, 173, 330, 576, 786, 796
TspGWI ACGGA 2 cut(s) 132, 863
TspRI CASTG 2 cut(s) 426, 768
VpaK11BI GGWCC 2 cut(s) 38, 416
XapI RAATTY 1 cut(s) 817
XceI RCATGY 1 cut(s) 533
XmnI GAANNNNTTC 1 cut(s) 567
XspI CTAG 1 cut(s) 588
ZraI GACGTC 1 cut(s) 750
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.