Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0009316

Physical Location & Seq

Genomic Coordinates Forward (+)

8522022 .. 8524665

Gene Structure 2644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g10990.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGCCGAAGAAACCCATCTGCCAGAAGCAGCAACAGAGCCAAGGAAGCGGAAAATAGGGAAGAAGAAAGGCTCCAAGGCAAAGAAGAAGGCGAAGATGTTACATTCGTCAGAGGAAATCAGAGCCATGAAGCCGAAGAAGTTTAACAATAAAATGAAGAAACTGTTTCTGAAACGAGCTAAGGACTACAATTCGGAGTCGGAGGAGGAGTCCAAACAGGAAGATGTGAAACCGAAACCGTTGGGAAACAATGAGGAGGAGCCGAGTGGCGGTGCCGCGTCGTCTTCAGGAGAAGAGTCGGAGGAAGGTGGTGGTGGTGGTGGTGGTCGCAATAGGGGTGATGGAGTTTCAGATGACGAGGAGCACGGCGAGATTCTGCCCGGAATCATGAAGTTTTCGGAGGGTTGCAATGCGTTTAGGTTGGCATTCAAGAGTATAATCAAGAAGTCAGTTTCTCTGAATGCAGTGGGACCAGTGATGTCGGCGCACAAGAAGCTTGTTGCAGAAAAGCTTGCCGAGGAGCAGACGGAGCGCAAGGCCAAGGGCGAGGCTAAGAAGGAAAAGCATACGGTGATAGAAAAGGGGCATGTGATGCCGGCCAATTATTTGGACACGCATGAAAAGTTTCTAATCGGTGTTGCTACTAAAGGGGTGGTGAAGTTGTTCAATGCTGTCAACAAGGCACAAAATGCTCAGAAAGGACTGAATCCATCCAAGTTTAAAGATGCCAAAGTGATAAAAAAGCGGAGGAAAGAAGCATTCTTTTCAGAGTTGGGCAAAACGTCTTCGAAGGCTCATGCGTCTAAAGGCGCAGTGGATGGTGAAGGGCCAGCCTGGGCTCCCTTAAGAGATAATTACATGCTCACAAATCCCAAATTGAAAGACTGGGATAAGATGCCGGACACCGTTGTGGACGATGACATTGGAAGGGTCGCTGGAGATAGTTCCGATGACGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rrp15p

Protein Analysis

320

Amino Acids

34.87

Weight (kDa)

9.32

Isoelectric Point (pI)

48.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48240 AT5G48240 AT5G48240
fragaria_vesca	FvH4_6g40390 FvH4_6g40390
malus_domestica	MD09G1131700.v1.1 MD17G1119200.v1.1
prunus_persica	Prupe.3G194600_v2.0.a1 Prupe.3G194600_v2.0.a1 Prupe.3G194600_v2.0.a1
pyrus_communis	pycom09g05370 pycom17g10990
rosa_chinensis	RchiOBHm_Chr2g0155591
rosa_laevigata	RLG00000020848
rosa_multiflora	Rmu_sc0003971.1_g000004
rosa_roxburghii	Rroxscaffold_2G00093630
rosa_rugosa	Rorug02G0448400
rosa_samantha	Rh2AG514600 Rh2BG525400 Rh2CG499500 Rh2DG534300
rosa_wichuraiana	Rw2G042280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	272
AccII	CGCG	1 cut(s)	278
AciI	CCGC	4 cut(s)	49, 270, 276, 745
AcoI	YGGCCR	2 cut(s)	3, 597
AcuI	CTGAAG	1 cut(s)	270
AfiI	CCNNNNNNNGG	1 cut(s)	269
AflII	CTTAAG	1 cut(s)	844
AgsI	TTSAA	3 cut(s)	430, 667, 880
AjnI	CCWGG	1 cut(s)	833
AleI	CACNNNNGTG	1 cut(s)	908
AluBI	AGCT	3 cut(s)	179, 496, 511
AluI	AGCT	3 cut(s)	179, 496, 511
Alw21I	GWGCWC	1 cut(s)	366
AoxI	GGCC	4 cut(s)	3, 537, 597, 827
ApeKI	GCWGC	1 cut(s)	29
Asp700I	GAANNNNTTC	2 cut(s)	624, 662
AspLEI	GCGC	3 cut(s)	487, 534, 812
AspS9I	GGNCC	2 cut(s)	470, 827
AsuC2I	CCSGG	1 cut(s)	381
AsuHPI	GGTGA	4 cut(s)	350, 583, 667, 833
AsuII	TTCGAA	1 cut(s)	788
AvaII	GGWCC	1 cut(s)	470
BanI	GGYRCC	1 cut(s)	272
BanII	GRGCYC	1 cut(s)	841
BbsI	GAAGAC	2 cut(s)	276, 777
Bbv12I	GWGCWC	1 cut(s)	366
BbvI	GCAGC	1 cut(s)	41
BccI	CCATC	4 cut(s)	24, 335, 718, 812
BceAI	ACGGC	1 cut(s)	382
BciT130I	CCWGG	1 cut(s)	835
BcnI	CCSGG	1 cut(s)	381
BfrI	CTTAAG	1 cut(s)	844
BisI	GCNGC	2 cut(s)	30, 276
BlsI	GCNGC	2 cut(s)	31, 277
Bme1390I	CCNGG	2 cut(s)	381, 835
Bme18I	GGWCC	1 cut(s)	470
BmgT120I	GGNCC	2 cut(s)	470, 827
BmiI	GGNNCC	5 cut(s)	73, 261, 274, 471, 840
BmrFI	CCNGG	2 cut(s)	381, 835
BmrI	ACTGGG	1 cut(s)	895
BmsI	GCATC	3 cut(s)	582, 715, 885
BmuI	ACTGGG	1 cut(s)	895
BpiI	GAAGAC	2 cut(s)	276, 777
BpmI	CTGGAG	1 cut(s)	957
Bpu10I	CCTNAGC	1 cut(s)	180
Bpu14I	TTCGAA	1 cut(s)	788
BpuMI	CCSGG	1 cut(s)	381
BsaJI	CCNNGG	5 cut(s)	41, 75, 516, 540, 834
BsaXI	ACNNNNNCTCC	2 cut(s)	194, 224
Bsc4I	CCNNNNNNNGG	1 cut(s)	269
Bse118I	RCCGGY	1 cut(s)	595
Bse1I	ACTGG	2 cut(s)	473, 890
Bse3DI	GCAATG	1 cut(s)	415
BseBI	CCWGG	1 cut(s)	835
BseDI	CCNNGG	5 cut(s)	41, 75, 516, 540, 834
BseGI	GGATG	2 cut(s)	710, 823
BseLI	CCNNNNNNNGG	1 cut(s)	269
BseMI	GCAATG	1 cut(s)	415
BseMII	CTCAG	1 cut(s)	707
BseNI	ACTGG	2 cut(s)	473, 890
BseRI	GAGGAG	6 cut(s)	218, 221, 269, 272, 374, 533
BseXI	GCAGC	1 cut(s)	41
Bsh1236I	CGCG	1 cut(s)	278
BshFI	GGCC	4 cut(s)	5, 539, 599, 829
BshNI	GGYRCC	1 cut(s)	272
BsiHKAI	GWGCWC	1 cut(s)	366
BsiSI	CCGG	3 cut(s)	381, 596, 899
BslFI	GGGAC	1 cut(s)	483
BslI	CCNNNNNNNGG	1 cut(s)	269
BsmFI	GGGAC	1 cut(s)	483
BsmI	GAATGC	3 cut(s)	425, 466, 758
BsnI	GGCC	4 cut(s)	5, 539, 599, 829
Bsp119I	TTCGAA	1 cut(s)	788
Bsp1286I	GDGCHC	2 cut(s)	366, 841
BspACI	CCGC	4 cut(s)	49, 270, 276, 745
BspANI	GGCC	4 cut(s)	5, 539, 599, 829
BspCNI	CTCAG	1 cut(s)	706
BspFNI	CGCG	1 cut(s)	278
BspHI	TCATGA	1 cut(s)	387
BspLI	GGNNCC	5 cut(s)	73, 261, 274, 471, 840
BspT104I	TTCGAA	1 cut(s)	788
BspT107I	GGYRCC	1 cut(s)	272
BspTI	CTTAAG	1 cut(s)	844
BsrDI	GCAATG	1 cut(s)	415
BsrFI	RCCGGY	1 cut(s)	595
BsrI	ACTGG	2 cut(s)	473, 890
BssAI	RCCGGY	1 cut(s)	595
BssECI	CCNNGG	5 cut(s)	41, 75, 516, 540, 834
BssT1I	CCWWGG	3 cut(s)	41, 75, 540
Bst2UI	CCWGG	1 cut(s)	835
Bst4CI	ACNGT	4 cut(s)	165, 240, 571, 907
Bst6I	CTCTTC	1 cut(s)	288
BstAFI	CTTAAG	1 cut(s)	844
BstAPI	GCANNNNNTGC	2 cut(s)	592, 689
BstBI	TTCGAA	1 cut(s)	788
BstC8I	GCNNGC	3 cut(s)	513, 597, 831
BstDEI	CTNAG	3 cut(s)	180, 552, 693
BstF5I	GGATG	2 cut(s)	710, 823
BstFNI	CGCG	1 cut(s)	278
BstHHI	GCGC	3 cut(s)	487, 534, 812
BstMWI	GCNNNNNNNGC	5 cut(s)	46, 493, 529, 592, 689
BstNI	CCWGG	1 cut(s)	835
BstNSI	RCATGY	2 cut(s)	590, 862
BstSCI	CCNGG	2 cut(s)	379, 833
BstUI	CGCG	1 cut(s)	278
BstV1I	GCAGC	1 cut(s)	41
BstV2I	GAAGAC	2 cut(s)	276, 777
BstXI	CCANNNNNNTGG	1 cut(s)	607
BsuRI	GGCC	4 cut(s)	5, 539, 599, 829
BtsCI	GGATG	2 cut(s)	710, 823
BtsI	GCAGTG	2 cut(s)	471, 819
BtsIMutI	CAGTG	3 cut(s)	471, 480, 819
Cac8I	GCNNGC	3 cut(s)	513, 597, 831
CciI	TCATGA	1 cut(s)	387
CfoI	GCGC	3 cut(s)	487, 534, 812
Cfr10I	RCCGGY	1 cut(s)	595
Cfr13I	GGNCC	2 cut(s)	470, 827
CseI	GACGC	2 cut(s)	267, 789
CviAII	CATG	6 cut(s)	127, 388, 587, 617, 797, 859
DdeI	CTNAG	3 cut(s)	180, 552, 693
DraI	TTTAAA	1 cut(s)	721
EaeI	YGGCCR	2 cut(s)	3, 597
Eam1104I	CTCTTC	1 cut(s)	288
EarI	CTCTTC	1 cut(s)	288
Eco130I	CCWWGG	3 cut(s)	41, 75, 540
Eco24I	GRGCYC	1 cut(s)	841
Eco47I	GGWCC	1 cut(s)	470
Eco57I	CTGAAG	1 cut(s)	270
EcoRII	CCWGG	1 cut(s)	833
EcoT14I	CCWWGG	3 cut(s)	41, 75, 540
EcoT38I	GRGCYC	1 cut(s)	841
ErhI	CCWWGG	3 cut(s)	41, 75, 540
FaeI	CATG	6 cut(s)	130, 391, 590, 620, 800, 862
FaiI	YATR	8 cut(s)	128, 389, 437, 567, 588, 618, 798, 860
FaqI	GGGAC	1 cut(s)	483
FatI	CATG	6 cut(s)	126, 387, 586, 616, 796, 858
Fnu4HI	GCNGC	2 cut(s)	30, 276
FokI	GGATG	2 cut(s)	697, 830
FriOI	GRGCYC	1 cut(s)	841
Fsp4HI	GCNGC	2 cut(s)	30, 276
GlaI	GCGC	3 cut(s)	486, 533, 811
GluI	GCNGC	2 cut(s)	30, 276
GsuI	CTGGAG	1 cut(s)	957
HaeIII	GGCC	4 cut(s)	5, 539, 599, 829
HapII	CCGG	3 cut(s)	381, 596, 899
HgaI	GACGC	2 cut(s)	267, 789
HhaI	GCGC	3 cut(s)	487, 534, 812
Hin1II	CATG	6 cut(s)	130, 391, 590, 620, 800, 862
Hin6I	GCGC	3 cut(s)	485, 532, 810
HinP1I	GCGC	3 cut(s)	485, 532, 810
HincII	GTYRAC	1 cut(s)	676
HindII	GTYRAC	1 cut(s)	676
HindIII	AAGCTT	2 cut(s)	494, 509
HinfI	GANTC	6 cut(s)	197, 209, 296, 373, 384, 706
HpaII	CCGG	3 cut(s)	381, 596, 899
HphI	GGTGA	4 cut(s)	350, 583, 667, 833
Hpy166II	GTNNAC	2 cut(s)	676, 913
Hpy188III	TCNNGA	4 cut(s)	288, 388, 430, 442
Hpy8I	GTNNAC	2 cut(s)	676, 913
Hpy99I	CGWCG	1 cut(s)	283
HpyAV	CCTTC	6 cut(s)	82, 299, 550, 784, 818, 921
HpyCH4III	ACNGT	4 cut(s)	165, 240, 571, 907
HpyCH4IV	ACGT	1 cut(s)	782
HpyCH4V	TGCA	3 cut(s)	408, 464, 503
HpyF10VI	GCNNNNNNNGC	5 cut(s)	46, 493, 529, 592, 689
HpyF3I	CTNAG	3 cut(s)	180, 552, 693
HpySE526I	ACGT	1 cut(s)	782
Hsp92II	CATG	6 cut(s)	130, 391, 590, 620, 800, 862
HspAI	GCGC	3 cut(s)	485, 532, 810
KroI	GCCGGC	1 cut(s)	595
KroNI	GCCGGC	1 cut(s)	597
LmnI	GCTCC	6 cut(s)	77, 259, 361, 520, 529, 844
Lsp1109I	GCAGC	1 cut(s)	41
LweI	GCATC	3 cut(s)	582, 715, 885
MaeII	ACGT	1 cut(s)	782
MaeIII	GTNAC	1 cut(s)	99
MhlI	GDGCHC	2 cut(s)	366, 841
MluCI	AATT	4 cut(s)	190, 601, 853, 875
MlyI	GAGTC	3 cut(s)	206, 218, 305
MmeI	TCCRAC	2 cut(s)	180, 279
MroNI	GCCGGC	1 cut(s)	595
MroXI	GAANNNNTTC	2 cut(s)	624, 662
MseI	TTAA	3 cut(s)	144, 720, 845
MslI	CAYNNNNRTG	1 cut(s)	908
MspCI	CTTAAG	1 cut(s)	844
MspI	CCGG	3 cut(s)	381, 596, 899
MspR9I	CCNGG	2 cut(s)	381, 835
Mva1269I	GAATGC	3 cut(s)	425, 466, 758
MvaI	CCWGG	1 cut(s)	835
MvnI	CGCG	1 cut(s)	278
MwoI	GCNNNNNNNGC	5 cut(s)	46, 493, 529, 592, 689
NaeI	GCCGGC	1 cut(s)	597
NciI	CCSGG	1 cut(s)	381
NgoMIV	GCCGGC	1 cut(s)	595
NlaIII	CATG	6 cut(s)	130, 391, 590, 620, 800, 862
NlaIV	GGNNCC	5 cut(s)	73, 261, 274, 471, 840
NmeAIII	GCCGAG	2 cut(s)	288, 541
NspI	RCATGY	2 cut(s)	590, 862
NspV	TTCGAA	1 cut(s)	788
OliI	CACNNNNGTG	1 cut(s)	908
PagI	TCATGA	1 cut(s)	387
PctI	GAATGC	3 cut(s)	425, 466, 758
PdiI	GCCGGC	1 cut(s)	597
PdmI	GAANNNNTTC	2 cut(s)	624, 662
PfeI	GAWTC	3 cut(s)	373, 384, 706
PkrI	GCNGC	2 cut(s)	31, 277
PleI	GAGTC	3 cut(s)	205, 217, 304
PpsI	GAGTC	3 cut(s)	205, 217, 304
Psp6I	CCWGG	1 cut(s)	833
PspGI	CCWGG	1 cut(s)	833
PspN4I	GGNNCC	5 cut(s)	73, 261, 274, 471, 840
PspPI	GGNCC	2 cut(s)	470, 827
RseI	CAYNNNNRTG	1 cut(s)	908
SaqAI	TTAA	3 cut(s)	144, 720, 845
SatI	GCNGC	2 cut(s)	30, 276
Sau96I	GGNCC	2 cut(s)	470, 827
SchI	GAGTC	3 cut(s)	206, 218, 305
ScrFI	CCNGG	2 cut(s)	381, 835
SduI	GDGCHC	2 cut(s)	366, 841
SetI	ASST	6 cut(s)	181, 310, 422, 498, 513, 785
SfaNI	GCATC	3 cut(s)	582, 715, 885
SfuI	TTCGAA	1 cut(s)	788
SinI	GGWCC	1 cut(s)	470
SmiMI	CAYNNNNRTG	1 cut(s)	908
SmlI	CTYRAG	1 cut(s)	844
SmoI	CTYRAG	1 cut(s)	844
Sse9I	AATT	4 cut(s)	190, 601, 853, 875
SsiI	CCGC	4 cut(s)	49, 270, 276, 745
StyD4I	CCNGG	2 cut(s)	379, 833
StyI	CCWWGG	3 cut(s)	41, 75, 540
TaaI	ACNGT	4 cut(s)	165, 240, 571, 907
TaiI	ACGT	1 cut(s)	785
TaqI	TCGA	1 cut(s)	788
TasI	AATT	4 cut(s)	190, 601, 853, 875
TauI	GCSGC	1 cut(s)	278
TfiI	GAWTC	3 cut(s)	373, 384, 706
Tru1I	TTAA	3 cut(s)	144, 720, 845
Tru9I	TTAA	3 cut(s)	144, 720, 845
TscAI	CASTG	3 cut(s)	471, 480, 819
TseI	GCWGC	1 cut(s)	29
TspDTI	ATGAA	4 cut(s)	143, 170, 404, 633
TspGWI	ACGGA	1 cut(s)	542
TspRI	CASTG	3 cut(s)	471, 480, 819
Vha464I	CTTAAG	1 cut(s)	844
VpaK11BI	GGWCC	1 cut(s)	470
XceI	RCATGY	2 cut(s)	590, 862
XmnI	GAANNNNTTC	2 cut(s)	624, 662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.